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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019555 ID=TCONS_00019555|Name=TCONS_00019555|organism=Clytia hemisphaerica|type=transcript|length=1375bp
CATTCACAATAACTTTAGGAAAAACTATTAAAACTAGAAGATAAAATCAT
ATTTTCATACTTTTCTCTTATATTTATATTTCTTTAggtgaaaaataaaa
agtatgaACAATGTTTGACGCTTATCAAAGTGGTGAGGATGGCCACCGGA
GAATCAAGTACTGAAGACGaattgtcacgtgatttctcaACATTGAGTAC
ATCCTCCTCTGTTACAAGTTCCATAAGTAGAAAAAGTAATGCAAGTACGT
TAAAAGATGACCAAGATGGTGAAGATTTATCTCGTCAAGGAACAACAATG
TCGGATGAATCAACGTCATCCCGACCGACCTCTGGACTATCGNTATCTCG
TCAAGGAACGACAATGTCGGATGAATCAACGTCATCCCGACCGACCTCTG
GACTATCGTCGGTAGCTACTGCTTCCCGACAAAATACGGTTGGTTCGTTA
AGAAGTGAGAATAATTCACGACAATCTCAACGATCGCTTTCTAGAGGAAG
CACTATTCGAAATGATGATCCCGAAGTGAAGAATAATTCGGTTTCACGAG
AATCTTCTGTCTTGTCTTCTCGGAATGGATATGATGACGATTTTCATGAC
GACGAAGAATCCAGTCCAACTTCGGCATCAAGCCGACAACAGTCGTTTGT
CGGGAAATCACCAAGTAATGATAATAGTGATGATACTGAGAGCGAAAGTG
AAGATATGGGGAAAATGGAGAAAGAAAACagtgttttgattgaaaaagat
GGGAAATTTGAGTTAGTCGAAGAACGAAACTTAACTATCGATCAACGAGA
AGCTCTCGGTTTAACGAAACGAGAAAAACGAAAACCGAACACGTTGAACA
TTCCCGCGTCTAGTGGTCGTGTCCGTAAATCAAGTAACCCGGAGTACGCA
CATTTGAAATCGGAGTACGGTATGAGTGAACAACAGAAGGAGATGAAATT
TCGACGTGTTTCCGTCATGCAGATGAGACGACAGGAGGAGAAGGAACGAA
TGAAACAAGAAGACGAAGAGAAGAAGAGAGCAGCTGATAAGTCGTTCCAG
CAATGGCTAGCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTAC
TCCACATCAAcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCG
AAGAAGAAATGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGG
ATAGATGAGAAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAAT
CAGACTAGCTGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAAT
GTGACAAAGCTTTTAAAGAATggttgaaaaagaagaaagtggAAAGACAA
TCAACGCCCACTCAAACCACCCGNN Run BLAST on NCBI transcript from alignment at sc0000331:74203..76862+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019555 ID=TCONS_00019555|Name=TCONS_00019555|organism=Clytia hemisphaerica|type=transcript|length=2660bp|location=Sequence derived from alignment at sc0000331:74203..76862+ (Clytia hemisphaerica)
CATTCACAATAACTTTAGGAAAAACTATTAAAACTAGAAGATAAAATCAT
ATTTTCATACTTTTCTCTTATATTTATATTTCTTTAggtgaaaaataaaa
agtatgaACAATGTTTGACGCTTATCAAAGTGGTGAGGATGGCCACCGGA
GAATCAAGTACTGAAGACGaattgtcacgtgatttctcaACATTGAGTAC
ATCCTCCTCTGTTACAAGTTCCATAAGTAGAAAAAGTAATGCAAGTACGT
TAAAAGATGACCAAGATGGTGAAGATTTATCTCGTCAAGGAACAACAATG
TCGGATGAATCAACGTCATCCCGACCGACCTCTGGACTATCGNTATCTCG
TCAAGGAACGACAATGTCGGATGAATCAACGTCATCCCGACCGACCTCTG
GACTATCGTCGGTAGCTACTGCTTCCCGACAAAATACGGTTGGTTCGTTA
AGAAGTGAGAATAATTCACGACAATCTCAACGATCGCTTTCTAGAGGAAG
CACTATTCGAAATGATGATCCCGAAGTGAAGAATAATTCGGTTTCACGAG
AATCTTCTGTCTTGTCTTCTCGGAATGGATATGATGACGATTTTCATGAC
GACGAAGAATCCAGTCCAACTTCGGCATCAAGCCGACAACAGTCGTTTGT
CGGGAAATCACCAAGTAATGATAATAGTGATGATACTGAGAGCGAAAGTG
AAGATATGGGGAAAATGGAGAAAGAAAACagtgttttgattgaaaaagat
GGGAAATTTGAGTTAGTCGAAGAACGAAACTTAACTATCGATCAACGAGA
AGCTCTCGGTTTAACGAAACGAGAAAAACGAAAACCGAACACGTTGAACA
TTCCCGCGTCTAGTGGTCGTGTCCGTAAATCAAGTAACCCGGAGTACGCA
CATTTGAAATCGGAGTACGGTATGAGTGAACAACAGAAGGAGATGAAATT
TCGACGTGTTTCCGTCATGCAGATGAGACGACAGGAGGAGAAGGAACGAA
TGAAACAAGAAGACGAAGAGAAGAAGAGAGCAGCTGATAAGTCGTTCCAG
GTACACTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAACTGG
CTTTTGCGGGTTAACTATAATGACTGAAAAAATTCTCGTCTGgctaaaaa
aatttctcaattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTCGCA
CGTTCGAAAGTGAACTTTTGGTTTGATTACTATTTTTCTCATTGCTCACA
GGTTGTCGATCATATACAGCCCGTTCTTTTTGTTGGTTTATTCGTAAGAC
AGAGAGTAGTTTTTGGTGTTTGGTCTGCTCGAGCTAGCAATAAACTAATT
TTAAATTCTCCTTTTATTCTTCCAGCAATGGCTAGCACAAAAGAAAGAGA
CCAAAGCAGACAAGAAGCCTGCTACTCCACATCAAcgtaagaaaaagaag
acagtACCTAGTGTACAATTGAGCGAAGAAGAAATGCAGCGGCGGGAGCT
TCAAGACCGCGCGTTCAAACAATGGATAGATGAGAAGGAAGAGCAAACGA
AAGATGAGAAAAAGATGGAGGAAATCAGACTAGCTGAAGAAGCACAAAAT
TATGTTGTCAGAGATCGAAAACAATGTGACAAAGCTTTTAAAGAGTGAgg
attttgtttatgttgatcTCAGCCTTTTATTTTNGGCTGATAAATCGTTC
AAGGTACACTATCGTATTGTGTGATGTTTTGGTCAAGGTTTTATATAAAC
TGGCTTTTGCGGGTTAACTATAATGACTGAAAAAATTCTCGTCTAgctaa
aaaaatttctcaattgTTGGAAAATAATTAAGTTGAGGTTAGCATAGTTC
GCACGTTCGAAAGTGAACTTTTGGTTTCTTTGATTACTATTTTTCTCATT
GCTCACATGGGTCACAGGTTGTCGATCATATACAGCCCGTTCTTTTTGTT
GGTTTATTCGTTAGACAAAAAGTAGTTTTTGGTGTTTGGTCTGCTCGAGC
TAGCAATAAACTAATTTTAAATTCTCCTTTTATTTTTCCAGCAATGGCTA
GCACAAAAGAAAGAGACCAAAGCAGACAAGAAGCCTGCTACTCCACATCA
AcgtaagaaaaagaagacagtACCTAGTGTACAATTGAGCGAAGAAGAAA
TGCAGCGGCGGGAGCTTCAAGACCGCGCGTTCAAACAATGGATAGATGAG
AAGGAAGAGCAAACGAAAGATGAGAAAAAGATGGAGGAAATCAGACTAGC
TGAAGAAGCACAAAATTATGTTGTCAGAGATCGAAAACAATGTGACAAAG
CTTTTAAAGAGTGAggattttgtttatgttgatcTCAgccttttattttt
tgaaatctttcctGCAAATCTTTCTGGCTTAATCATATTTAAGATACCAG
CTTGTCCAACAGTAAAGAAAATAATAAGCGACTTTTATGATTTTCCGCCT
ATCATTATGTTGGAGACAGAAATTGACCTTGAAGCACTGCAGAGGTTCAC
GAGGGAATTTCCTTTCTCTATCAAGCAAGAAAAGTAAAACCTTATGTTGA
cagaataaataatttttttttgattaaatAGTAATTTACCTTTACTTGTC
TTAGATggttgaaaaagaagaaagtggAAAGACAATCAACGCCCACTCAA
ACCACCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019555-exon-sc0000331-1491911889:74203..75252 | TCONS_00019555-exon-sc0000331-1491911889:74203..75252 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1510915933:74203..75252 | TCONS_00019555-exon-sc0000331-1510915933:74203..75252 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1575043694:74203..75252 | TCONS_00019555-exon-sc0000331-1575043694:74203..75252 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1491911889:76244..76512 | TCONS_00019555-exon-sc0000331-1491911889:76244..76512 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1510915933:76244..76512 | TCONS_00019555-exon-sc0000331-1510915933:76244..76512 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1575043694:76244..76512 | TCONS_00019555-exon-sc0000331-1575043694:76244..76512 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1491911889:76807..76862 | TCONS_00019555-exon-sc0000331-1491911889:76807..76862 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1510915933:76807..76862 | TCONS_00019555-exon-sc0000331-1510915933:76807..76862 | Clytia hemisphaerica | exon |
| TCONS_00019555-exon-sc0000331-1575043694:76807..76862 | TCONS_00019555-exon-sc0000331-1575043694:76807..76862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000331 | supercontig | sc0000331:74203..76862 + |
Blast
The following BLAST results are available for this feature:
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