XLOC_010404 (gene) - C. hemisphaerica

Overview
NameXLOC_010404
Unique NameXLOC_010404
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000303:40491..50006+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_010404 ID=XLOC_010404|Name=XLOC_010404|organism=Clytia hemisphaerica|type=gene|length=9516bp|location=Sequence derived from alignment at sc0000303:40491..50006+ (Clytia hemisphaerica)
GTTGTTATTTCGGCGCCgtaattttgtttgaaaataacaacaacttTCTG
CAAGATCAGCAAACAAATTTCTCAGCGATGTGGTGTCAAGTCAAAAGATC
GCTGTATGTATCGCCACCATTCATCTCATCATTTCACTCAAATCACATCA
CGCCACACTTCCAATGAACACACTTTGATTATCAAAGAAGggtaaatgtt
tttcatttcattataaaGATTATATTGCCCCtaaatgtatttttattttt
tatgtttctttttttactgCAGATTGTATTGATTGAACtgggccaggccc
aattgatagcttggttcgtgtcctccgaccgactctaaattttctagaaa
aagtgtttcactttgagtcggaaagaaaaaaattacctccTTTTCACATG
ATAACTACTATCTCTGCGGTTCTTTTTTGACTGGCTGATTTCATTCTTCT
ATAAACAACATCCACTTCACGCACACAGAAAATGTCCCGGTGTAACCAtg
tacttaaaaacaaatattaagcACCTAAAAGCAGAGACTTGCAGCTGTAT
TCCTTTAAGCACACGCCGCATCGCCTTAATCTCCAACTAGAAGTTATCTT
GCGATCGATCGCGCGCGGCGCGTGCCTTTTTTGTGGATCCAGGCTTTAGG
CGAGGCTATTTCTTTACATTCGCGTATGGATTCCAGGATTGCACGATTGC
tagaggaatttcaaaaattgaggtttttggtgggaaaatgaaaaaaagat
tccaattttagctaccgaccgaccgaccgacccatttttcaaagcttcta
ggacacgaaccaaacaatcaattgggcctggccctGGCACTCTGTCTGTG
ACTGTGTGGTGTGGAAAAAAGcttgttttttctctctttttttctatCAG
TTACTGTAACTTTTTCAGAAATTCATGCTATGATTTACTCTTTTACTGAC
TGATTTATGAACTCATtagcgaaaatttttattcttGTTATTTTATGATG
ATGTTGGGATTTCGGAGTGTGGTAATTGAGCCAATTTTACTTATaggtag
caactccagaagatttttcaaattttaattttttttcaaaacctatccta
tcttgtagagctttgaaaaagaaagaaaatgaggggtcataggcctccaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAAA
ACGTttggcattttaccaatttgccgtctagcccgtgtccacagtgttat
ataccgctggaaagctaagatcacgggctttcatttagtaaaaaccggtt
ccaagggttcaaagttcacggaaaatgaaacatttggatttggtttgacg
tcaacgaaagttgcatgacttctggagtcgctattATAGGCGAGGgaaat
ttgatgttctgtttaccgtcgcgttgcaaaaaatatttgatgcgccaaaa
tttcattattcattattcattattcctacCTGGTGCTTCCCATCTCCAAT
GAAGTTGAATTCCACTGCCCGTAAAATCGAGCTGCTTTCTTCACTTTCGG
AATCAAAATGACATGAtgtccaggggatgtcaatcgaactcaatGGTAAT
GGAATTCGATTTGGAGTCGAATCGATCGAATTCAATCGAAGTAAATGGAA
GTGATTgttcgaatcaatcgaactcaatcgaagtgattgattgaacaatc
gaattcaatcaaaatgggaaaaagatgtaaatcttcgatcaacttcgatt
ggattcgatctattcgatcaatcacttcgattggtttcgattgttcgatc
aatcacttcgattgagttcgattgatatgaacaatcacttcgatttaCTT
CGATTGATTTGATCACACGTGGTGTTATTGTTTGGGCTATTTATTTAGTC
CACTAAGAAAAaaggatgtcaatcgaaaatttggaatataatcgaaacca
atcgaagtgattgaccgaatcaatcgaagccaatcgaaccaaatcaatct
taaaatgatgtaaatcttcgatcgacttcgattgtttcgatcaatcactt
cgattggctTCGATCGATTCggtcaatcacttcgattggtttcgattata
tttgattggtttgacaatcgaaattttcgattgacatcccctggacaTGT
GCGAAAATTCAATCGCGTTCGAGACGCGTCTAAAACGCGCTTGTAGCAAC
CCACTGCTTAAAAAAATGCCTGCCCCCATTCGCGGACATGATTGGAACCA
TGTTTTTTACTCGAGGCGCATATTTTGTTAGCgaagatgttatttttgat
tcactttgagtgttttggatagcttggcacaggaaaaaaaataagaagaa
aataatgagttgttaagaaataatgaacttttttgagcggcgGCTCTAGA
GCATGCGGGTGGtcgacggtaaacagaacatcaaattcccctcgccttat
catttttaatgcactgctgttatggtgtccattccagccaagccatattt
tatcattctacagaaatccccgcttgaaaaatcaaaacattgatacgtGG
TCGAGTTTACTAAACTTTGCCGAATTAAAACGCGGGAAAATATCATATGA
CGTATGACCATGTCTTCCGTTCACTCCGATCATGATTCTGATCACgtgat
gttttgacttttttaaaccaatgaaatcatCTGTTTATACCGCACTAAAG
GCCTTTCTAGATTACCGCGCAAAAAAAACTGGGGGTCAGCATGAACTTCA
AAGCCTGCTGCGGGAAagggaaatggttttgaagaaccaaatatatgcaa
aaaggttttaatatcatccaaatattacaaaaacaagtgacatttacatg
gttgatctttataaagtttgatcTGATGGTTTGTTGTAAAAAAGTTGACC
CTCGTGTTGGTATTATAGCCTatctttttggatttgtgagaagacaaatg
ttattgtaaagaaaagtcatttggaagtgtaatcataccctttccaggga
actggagcaacattttttaagtcagaattcaTTGCCAGTAATGCCACAGC
GTGGTTTGAAACCTCGCTGGTGGTTGTTGTAGGTCTggtggaaaatggat
ttatttctgaatataaacattactgcagctagaatattttctttattttg
aaaaacaaaaggttcaaggtttgtttactttttattttactgcattTCGC
TGTCTTATTCTGCTGTAGTAGGCAATTGAAGTctcttgattttttgtttt
tgtcagtgctcactcggcagccattttgaatttttttcttcaatgtctgt
actcggcaatttcgtGACCTCTACAGAATCAACGATTTTGCCTGAGGGGA
ACAGCAGTGAATGGTTATTTCGATTTTAAGCTAAAATGTTGTTCCATGAA
TGGGGTGCTTGCCCATACCGtagaatcgtctaatatcgacacaCCTCCTT
TAaagtcgacaccggatctgtaaaataatcaaaacaaaccttgaatgaaa
ttcttggtatcattcttatcaaacaagttcacccatccatcaaactagaa
gttcagtaaacattgcaattcttttaatacaaaaagcagccaaattatat
aaataattttACACAACATATGCATATGAAAcatgaaacgcatgcaaact
ttaaTAATCTTTCTCGtgcccatcattaaaattttacaactttattacaa
ttcaagtcacgtgataaaaataatttgcgcgcttagtctgcctggtttcc
ccttccttatttatcacaaacacacgctctaggcaCTAAGAGGCCGCACG
TCGTAatggccagtatggcggtcacattaaattcaaaaggaaaccgggtt
ctttttattatttacgGGTCACGGTAATAAACAATTCCTCACATGCAAAA
TGTTGTTATGATTTGGatatcttcgttgaaagcatgctaattagtttttt
agtgatgaCTATACATcgttaaatttttcttttcaaacataAGTAATAAC
ACATTTCTCATAtatcaacaatctgtgacgtgatagggagagtacaattt
agtgattgattggtaactttggtatgtatttgtttatgtttgatttttta
tttcgaaaaccaacctacagctatgtcgaaataacaagacgcatgtcgat
attggACGATTCTACGGtagttaccgtcaactgctctaacttggatcgtg
ttcaaaaataaaggcctgttttgtgacattttcaaagtggctgacaattt
tgttaataaaatgagtatttttggtgGCTAACAGTTTATTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTtaccatttttttcatcaa
aatatgttctttgtgtaaataccgatcatcatataaaatttcaacgtttt
atttgaaatatttcccaagttattcaagaaatactcaatttttgagttcc
ctaaatgtcacactatttttgaacatGATCCTTGGGACTatttgacaaaa
catgggatggcaattcgaccaccatttcaccggAACCTCCacccaaagtc
atttgatttgagtttataatgaacagcgtattaaaaaaaatacacgattt
ctctttcgcatcGACAGTGAAGCTGGAACCTCAAtatttgaggattacga
ttttaccagctttttagcgatttttgccttgcTAAACCAAATTTCGCAAC
CTCTTTAGCTTAAGGTAGATCGAAATTAGAATTTTTCAGGGTTCTGAAAA
AAATGCATTGCCGAAATTTGTTCATCTTCATAATATCGATTCACAACCAC
AAAATATATACATCTTTCGGTCAATGGGTTTTTTTCTGATGTTCTtcttt
caaagaatatcgatcactttcattttcctcTTTAAAGTgcacaagaaaaa
aatgattagctcgagttctcgcgcgggcgaatagaGATGAGAGGTGGTAA
TCATGGCTAAGGGCGCTACCTAGTTCCACcttattttgcgcccacgatca
gtcagggaaatccctcaattgcggtagtaattttttactgcagttgcggt
ataaacgtcacttttacatttttcatataccgcaattgcagtatattcaa
gaaacagaattcaagattcaaggagaaaacaggcaatttttgtacataat
tgatcatatctttttaacgcacagacaaaatattttttccatagatcaga
ttcttttaataaagaaaagctttcttctcgtacaattttttacagtcaat
gtttgtttatctttgtcgaccagcactatGTGTAGccgttataagccttt
gtagaCTAACCACAAATTAAAACTattgcaattgcagtataccgcaattg
agggattttcCTGACTGACGATAGAAtgtttttttcctcaaacccccggg
aatagtttttttgccgacttagctattttacaaatctcggaaaagaactc
ccataggaattccaaTACATAacctgattggttaatttcggaacgccttc
aagaaagtcataatggcagaaattttaaaaatttctgatgaggaaatgtg
tggaatttatcgatgttgatctgttgatggcttgttgattctttaaagaa
aaaagataataggtatagctttttctaatcctggaatatgaAGGTTCCAG
CTGCACTgaccaagtaggcttttaaatcgaataTCAAAAAATTCTGTAGT
ACAGTAAAACATGCGCGAGCTCACACGCGCTCTGCATCACAGATATCTAC
AAAACTCCTCATCGCACGGACTGTTAGATAATAGCCCCTTGAGAGAGCAA
GACATAAAAAGATGATGTGAATGGTTAATTACTTTTGTCAAATGCAGCTT
TTCTAGACATATctaccgtgaagttgggtaacttgcatcagtggagggaa
acttgcatagccatcaaatgactgaccaatcaaagctgcaaaatttcaaa
acaaatgaactacacagctccgttcgcagctctactctaccatttttgtt
ttgatttaactttgtattttaatgaccaggtaggtcattcatttgagggc
tatgcatgtttgcctccactgatgcaagttacccgatctcacggtatttt
TGTGATATATGAATGATAGAAGAAGTGtggttgataaacttggtggaagt
atcaaaacaaatttgctgTCAAAGtgtcaaagttttcaaaatcccTCATT
TAGATTGAACCAATagcagttaggaacatttggtgAGTTCCCTGTACGCg
gcaacaataaaaaaaaatcgtaaCAGCActgataaaaaaattacatttgt
gtcttttttttaccgtttttggCCTAGAATATATAGCAGTACAGCTAATT
GGCTGTAAAATTTTCAcaaactttcaacaatgataaaaccaaaCCTGTTT
TACAAAATTAACCAACTCATTTTTATCTTTCTCCTTCTTtatcttcaatg
aagcactcaaagttaactgaagttaagcacataagatattcttataatta
ttgatattcactaaaACACCGTTCATTGCGCGCTACTAACTTGCCTTCTG
TTGGAGCATCCTTTTGGATGAACGTAATAGAAgatgaaacttttccatgt
ttcaatttcgcaccaattcttcaaaatgaaaacatttatgATCGTAAATT
CTTCTTCTATTCGAGGACTTTTTGCGACATTTTGTTGTTCTTagtcttgc
atcaaattcccacTTTCTTCAGAGAATTAAGCAGACAGAATTGATCTAAC
AAATCACATGCAAAGTCAGTTgatgtcagaaatgtcatcgtGCTCAAGGG
GTGAAAaattttaggtgtcaaatttttttttattttgaagttatataaaa
gttaggaatttacagaaaatttcatgtcaaaagctctattatttcaggag
cttaACATTAGTTTCACCTgtgaacagaaacagcccccctcCCTAGTACG
AAAAGGGTTAAGATATAGACTCACCTTCCCTAAAGATTATAATTAAGCTT
CTAATAATTAAAGAAAATGAGAGAAGATAAGAGAAAACTTCAAATCAAca
agaatttacaacctttcgtccaaagcaaagagacttgttttttcttgccg
ccatcttgtttttgaATTCGAGAATTATTTTCCGTTCCAGTTCACATGGC
ATTTCTTCATCCAATCAGATGGCGCGATTTCACTTttgctttctctagtc
caataggACACAGAATTTGAGTCACGTAACATCTATATTGAAAAACCCGC
GCGAAATACAATAGAAATAAGATGTCCAAAGGAGGTCGTACTAATGGCTA
taggaactgaaagcaaacaattcagtccaatgtttttggtttttctgaaa
ggaaGGTATATAGGAAGGTTTACTGAAGGAGGCTGGGACtatttatttaa
aagatttggccaaaaaaggcacttttttgggtgatatttaagattttact
tagaaactttaattctgtTTTTCTATCGGCCAGTCAAAATAATTTTGCAT
tgtcaaatttggttctccattgttcTTACtatcaagtcaggatcgatggt
gacctcaccttaaaataaaaagaaatttaagtTCTAATTTGAGAGATATT
CTTTTTGCTGCACGAGCGCACTTTTTGTAGACTAGTTGGAACACCTCTTT
TTATTTGGGAGATTAATGGCAATTTTTCcttattgttattattaaaatga
agcacaaccgaaaagaaaagaaacccagaaagttgcgtatttccagtgag
tgaACAATTCtgtaaattgacaaaattgatgatgataaatTTTTTTCGCT
CAGCCAAATCTCTTGTATTAGGGGTTCTAGTCTTCAGCCCTAAGCCTATG
TGGGATTGAACAATTGGGTAAATGAGACAAAAGTAATTTCTGATGtcaaa
atttcttatacataacaTGTATTTGCATCTTTATCACAATTTAAAACTTA
GTTCtccagatttttttttttgatatttttttacatggtacctctggcga
tataacgttaagTAGTGTTTAAGTAGTGTTTTGTATATTGGTATTGTACA
CGTGTCTTTGCTTTGATAGAGaaaaaaatgcaattaaaatactaggaaaa
atcatttaattgtAAGAGGGTAAAGAGTAATACAATTACTGCAACCAATG
CTTAAACatgaaaaatcagcaaaaattagtcatttctttttccagtgtct
ataattaAATAGAATTAAAAATAGCaaaccaagtaaaaaaaacttataaG
ATAATTTTAagctgaaatttcaaatttgcgaTGGTGGTAATTAGTGATGT
GTATTAGGAATTCATTTTCACAATAAGCAAACAACCTTATTTCCTGCTTT
TATTTGTGGAAATCACTAAATCTTGTAGACAAATTTTCTGATATTAGTGG
TTTAGTTGCTAAAGATCTAAAGTTTTTTCGAAATCAGCTTTCAAAATTAT
AATCTCTTTTTTCCTACTGTGCAAAAATGAAAtcgtattttcttatttga
caTGCATTGCAATGAATTTATGTTTAATATCTTACTTAtggattttcctt
ttttgtttttaggtaattgattttgaaattggtatGTTGAGGCCATCCTT
AGGATTGAAAATTGAACAATCATCACATTCCGAGAATTCTAAAGGTAGGA
TCATATAACATTGGTAGAAAATTTGGTGGCAAAAAAGTAGGAAAAAATCG
CTGGTAACGAATTTTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00018601TCONS_00018601Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:40491..50006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.78	9.16	1.77	2.02	15.13	12.23	8.38	11.3	7.03	7.35	15.86	7.64	9.72	4.68	6.96	8.58	7.44	6.62	3.6	9	7.06	8.86	8.37	11.96	36.97	22.75	9.3	2.67	11	11.21