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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018601 ID=TCONS_00018601|Name=TCONS_00018601|organism=Clytia hemisphaerica|type=transcript|length=345bp
GTTGTTATTTCGGCGCCgtaattttgtttgaaaataacaacaacttTCTG
CAAGATCAGCAAACAAATTTCTCAGCGATGTGGTGTCAAGTCAAAAGATC
GCTGTATGTATCGCCACCATTCATCTCATCATTTCACTCAAATCACATCA
CGCCACACTTCCAATGAACACACTTTGATTATCAAAGAAGggtaattgat
tttgaaattggtatGTTGAGGCCATCCTTAGGATTGAAAATTGAACAATC
ATCACATTCCGAGAATTCTAAAGGTAGGATCATATAACATTGGTAGAAAA
TTTGGTGGCAAAAAAGTAGGAAAAAATCGCTGGTAACGAATTTTT Run BLAST on NCBI transcript from alignment at sc0000303:40491..50006+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018601 ID=TCONS_00018601|Name=TCONS_00018601|organism=Clytia hemisphaerica|type=transcript|length=9516bp|location=Sequence derived from alignment at sc0000303:40491..50006+ (Clytia hemisphaerica)
GTTGTTATTTCGGCGCCgtaattttgtttgaaaataacaacaacttTCTG
CAAGATCAGCAAACAAATTTCTCAGCGATGTGGTGTCAAGTCAAAAGATC
GCTGTATGTATCGCCACCATTCATCTCATCATTTCACTCAAATCACATCA
CGCCACACTTCCAATGAACACACTTTGATTATCAAAGAAGggtaaatgtt
tttcatttcattataaaGATTATATTGCCCCtaaatgtatttttattttt
tatgtttctttttttactgCAGATTGTATTGATTGAACtgggccaggccc
aattgatagcttggttcgtgtcctccgaccgactctaaattttctagaaa
aagtgtttcactttgagtcggaaagaaaaaaattacctccTTTTCACATG
ATAACTACTATCTCTGCGGTTCTTTTTTGACTGGCTGATTTCATTCTTCT
ATAAACAACATCCACTTCACGCACACAGAAAATGTCCCGGTGTAACCAtg
tacttaaaaacaaatattaagcACCTAAAAGCAGAGACTTGCAGCTGTAT
TCCTTTAAGCACACGCCGCATCGCCTTAATCTCCAACTAGAAGTTATCTT
GCGATCGATCGCGCGCGGCGCGTGCCTTTTTTGTGGATCCAGGCTTTAGG
CGAGGCTATTTCTTTACATTCGCGTATGGATTCCAGGATTGCACGATTGC
tagaggaatttcaaaaattgaggtttttggtgggaaaatgaaaaaaagat
tccaattttagctaccgaccgaccgaccgacccatttttcaaagcttcta
ggacacgaaccaaacaatcaattgggcctggccctGGCACTCTGTCTGTG
ACTGTGTGGTGTGGAAAAAAGcttgttttttctctctttttttctatCAG
TTACTGTAACTTTTTCAGAAATTCATGCTATGATTTACTCTTTTACTGAC
TGATTTATGAACTCATtagcgaaaatttttattcttGTTATTTTATGATG
ATGTTGGGATTTCGGAGTGTGGTAATTGAGCCAATTTTACTTATaggtag
caactccagaagatttttcaaattttaattttttttcaaaacctatccta
tcttgtagagctttgaaaaagaaagaaaatgaggggtcataggcctccaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCAAA
ACGTttggcattttaccaatttgccgtctagcccgtgtccacagtgttat
ataccgctggaaagctaagatcacgggctttcatttagtaaaaaccggtt
ccaagggttcaaagttcacggaaaatgaaacatttggatttggtttgacg
tcaacgaaagttgcatgacttctggagtcgctattATAGGCGAGGgaaat
ttgatgttctgtttaccgtcgcgttgcaaaaaatatttgatgcgccaaaa
tttcattattcattattcattattcctacCTGGTGCTTCCCATCTCCAAT
GAAGTTGAATTCCACTGCCCGTAAAATCGAGCTGCTTTCTTCACTTTCGG
AATCAAAATGACATGAtgtccaggggatgtcaatcgaactcaatGGTAAT
GGAATTCGATTTGGAGTCGAATCGATCGAATTCAATCGAAGTAAATGGAA
GTGATTgttcgaatcaatcgaactcaatcgaagtgattgattgaacaatc
gaattcaatcaaaatgggaaaaagatgtaaatcttcgatcaacttcgatt
ggattcgatctattcgatcaatcacttcgattggtttcgattgttcgatc
aatcacttcgattgagttcgattgatatgaacaatcacttcgatttaCTT
CGATTGATTTGATCACACGTGGTGTTATTGTTTGGGCTATTTATTTAGTC
CACTAAGAAAAaaggatgtcaatcgaaaatttggaatataatcgaaacca
atcgaagtgattgaccgaatcaatcgaagccaatcgaaccaaatcaatct
taaaatgatgtaaatcttcgatcgacttcgattgtttcgatcaatcactt
cgattggctTCGATCGATTCggtcaatcacttcgattggtttcgattata
tttgattggtttgacaatcgaaattttcgattgacatcccctggacaTGT
GCGAAAATTCAATCGCGTTCGAGACGCGTCTAAAACGCGCTTGTAGCAAC
CCACTGCTTAAAAAAATGCCTGCCCCCATTCGCGGACATGATTGGAACCA
TGTTTTTTACTCGAGGCGCATATTTTGTTAGCgaagatgttatttttgat
tcactttgagtgttttggatagcttggcacaggaaaaaaaataagaagaa
aataatgagttgttaagaaataatgaacttttttgagcggcgGCTCTAGA
GCATGCGGGTGGtcgacggtaaacagaacatcaaattcccctcgccttat
catttttaatgcactgctgttatggtgtccattccagccaagccatattt
tatcattctacagaaatccccgcttgaaaaatcaaaacattgatacgtGG
TCGAGTTTACTAAACTTTGCCGAATTAAAACGCGGGAAAATATCATATGA
CGTATGACCATGTCTTCCGTTCACTCCGATCATGATTCTGATCACgtgat
gttttgacttttttaaaccaatgaaatcatCTGTTTATACCGCACTAAAG
GCCTTTCTAGATTACCGCGCAAAAAAAACTGGGGGTCAGCATGAACTTCA
AAGCCTGCTGCGGGAAagggaaatggttttgaagaaccaaatatatgcaa
aaaggttttaatatcatccaaatattacaaaaacaagtgacatttacatg
gttgatctttataaagtttgatcTGATGGTTTGTTGTAAAAAAGTTGACC
CTCGTGTTGGTATTATAGCCTatctttttggatttgtgagaagacaaatg
ttattgtaaagaaaagtcatttggaagtgtaatcataccctttccaggga
actggagcaacattttttaagtcagaattcaTTGCCAGTAATGCCACAGC
GTGGTTTGAAACCTCGCTGGTGGTTGTTGTAGGTCTggtggaaaatggat
ttatttctgaatataaacattactgcagctagaatattttctttattttg
aaaaacaaaaggttcaaggtttgtttactttttattttactgcattTCGC
TGTCTTATTCTGCTGTAGTAGGCAATTGAAGTctcttgattttttgtttt
tgtcagtgctcactcggcagccattttgaatttttttcttcaatgtctgt
actcggcaatttcgtGACCTCTACAGAATCAACGATTTTGCCTGAGGGGA
ACAGCAGTGAATGGTTATTTCGATTTTAAGCTAAAATGTTGTTCCATGAA
TGGGGTGCTTGCCCATACCGtagaatcgtctaatatcgacacaCCTCCTT
TAaagtcgacaccggatctgtaaaataatcaaaacaaaccttgaatgaaa
ttcttggtatcattcttatcaaacaagttcacccatccatcaaactagaa
gttcagtaaacattgcaattcttttaatacaaaaagcagccaaattatat
aaataattttACACAACATATGCATATGAAAcatgaaacgcatgcaaact
ttaaTAATCTTTCTCGtgcccatcattaaaattttacaactttattacaa
ttcaagtcacgtgataaaaataatttgcgcgcttagtctgcctggtttcc
ccttccttatttatcacaaacacacgctctaggcaCTAAGAGGCCGCACG
TCGTAatggccagtatggcggtcacattaaattcaaaaggaaaccgggtt
ctttttattatttacgGGTCACGGTAATAAACAATTCCTCACATGCAAAA
TGTTGTTATGATTTGGatatcttcgttgaaagcatgctaattagtttttt
agtgatgaCTATACATcgttaaatttttcttttcaaacataAGTAATAAC
ACATTTCTCATAtatcaacaatctgtgacgtgatagggagagtacaattt
agtgattgattggtaactttggtatgtatttgtttatgtttgatttttta
tttcgaaaaccaacctacagctatgtcgaaataacaagacgcatgtcgat
attggACGATTCTACGGtagttaccgtcaactgctctaacttggatcgtg
ttcaaaaataaaggcctgttttgtgacattttcaaagtggctgacaattt
tgttaataaaatgagtatttttggtgGCTAACAGTTTATTTTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTtaccatttttttcatcaa
aatatgttctttgtgtaaataccgatcatcatataaaatttcaacgtttt
atttgaaatatttcccaagttattcaagaaatactcaatttttgagttcc
ctaaatgtcacactatttttgaacatGATCCTTGGGACTatttgacaaaa
catgggatggcaattcgaccaccatttcaccggAACCTCCacccaaagtc
atttgatttgagtttataatgaacagcgtattaaaaaaaatacacgattt
ctctttcgcatcGACAGTGAAGCTGGAACCTCAAtatttgaggattacga
ttttaccagctttttagcgatttttgccttgcTAAACCAAATTTCGCAAC
CTCTTTAGCTTAAGGTAGATCGAAATTAGAATTTTTCAGGGTTCTGAAAA
AAATGCATTGCCGAAATTTGTTCATCTTCATAATATCGATTCACAACCAC
AAAATATATACATCTTTCGGTCAATGGGTTTTTTTCTGATGTTCTtcttt
caaagaatatcgatcactttcattttcctcTTTAAAGTgcacaagaaaaa
aatgattagctcgagttctcgcgcgggcgaatagaGATGAGAGGTGGTAA
TCATGGCTAAGGGCGCTACCTAGTTCCACcttattttgcgcccacgatca
gtcagggaaatccctcaattgcggtagtaattttttactgcagttgcggt
ataaacgtcacttttacatttttcatataccgcaattgcagtatattcaa
gaaacagaattcaagattcaaggagaaaacaggcaatttttgtacataat
tgatcatatctttttaacgcacagacaaaatattttttccatagatcaga
ttcttttaataaagaaaagctttcttctcgtacaattttttacagtcaat
gtttgtttatctttgtcgaccagcactatGTGTAGccgttataagccttt
gtagaCTAACCACAAATTAAAACTattgcaattgcagtataccgcaattg
agggattttcCTGACTGACGATAGAAtgtttttttcctcaaacccccggg
aatagtttttttgccgacttagctattttacaaatctcggaaaagaactc
ccataggaattccaaTACATAacctgattggttaatttcggaacgccttc
aagaaagtcataatggcagaaattttaaaaatttctgatgaggaaatgtg
tggaatttatcgatgttgatctgttgatggcttgttgattctttaaagaa
aaaagataataggtatagctttttctaatcctggaatatgaAGGTTCCAG
CTGCACTgaccaagtaggcttttaaatcgaataTCAAAAAATTCTGTAGT
ACAGTAAAACATGCGCGAGCTCACACGCGCTCTGCATCACAGATATCTAC
AAAACTCCTCATCGCACGGACTGTTAGATAATAGCCCCTTGAGAGAGCAA
GACATAAAAAGATGATGTGAATGGTTAATTACTTTTGTCAAATGCAGCTT
TTCTAGACATATctaccgtgaagttgggtaacttgcatcagtggagggaa
acttgcatagccatcaaatgactgaccaatcaaagctgcaaaatttcaaa
acaaatgaactacacagctccgttcgcagctctactctaccatttttgtt
ttgatttaactttgtattttaatgaccaggtaggtcattcatttgagggc
tatgcatgtttgcctccactgatgcaagttacccgatctcacggtatttt
TGTGATATATGAATGATAGAAGAAGTGtggttgataaacttggtggaagt
atcaaaacaaatttgctgTCAAAGtgtcaaagttttcaaaatcccTCATT
TAGATTGAACCAATagcagttaggaacatttggtgAGTTCCCTGTACGCg
gcaacaataaaaaaaaatcgtaaCAGCActgataaaaaaattacatttgt
gtcttttttttaccgtttttggCCTAGAATATATAGCAGTACAGCTAATT
GGCTGTAAAATTTTCAcaaactttcaacaatgataaaaccaaaCCTGTTT
TACAAAATTAACCAACTCATTTTTATCTTTCTCCTTCTTtatcttcaatg
aagcactcaaagttaactgaagttaagcacataagatattcttataatta
ttgatattcactaaaACACCGTTCATTGCGCGCTACTAACTTGCCTTCTG
TTGGAGCATCCTTTTGGATGAACGTAATAGAAgatgaaacttttccatgt
ttcaatttcgcaccaattcttcaaaatgaaaacatttatgATCGTAAATT
CTTCTTCTATTCGAGGACTTTTTGCGACATTTTGTTGTTCTTagtcttgc
atcaaattcccacTTTCTTCAGAGAATTAAGCAGACAGAATTGATCTAAC
AAATCACATGCAAAGTCAGTTgatgtcagaaatgtcatcgtGCTCAAGGG
GTGAAAaattttaggtgtcaaatttttttttattttgaagttatataaaa
gttaggaatttacagaaaatttcatgtcaaaagctctattatttcaggag
cttaACATTAGTTTCACCTgtgaacagaaacagcccccctcCCTAGTACG
AAAAGGGTTAAGATATAGACTCACCTTCCCTAAAGATTATAATTAAGCTT
CTAATAATTAAAGAAAATGAGAGAAGATAAGAGAAAACTTCAAATCAAca
agaatttacaacctttcgtccaaagcaaagagacttgttttttcttgccg
ccatcttgtttttgaATTCGAGAATTATTTTCCGTTCCAGTTCACATGGC
ATTTCTTCATCCAATCAGATGGCGCGATTTCACTTttgctttctctagtc
caataggACACAGAATTTGAGTCACGTAACATCTATATTGAAAAACCCGC
GCGAAATACAATAGAAATAAGATGTCCAAAGGAGGTCGTACTAATGGCTA
taggaactgaaagcaaacaattcagtccaatgtttttggtttttctgaaa
ggaaGGTATATAGGAAGGTTTACTGAAGGAGGCTGGGACtatttatttaa
aagatttggccaaaaaaggcacttttttgggtgatatttaagattttact
tagaaactttaattctgtTTTTCTATCGGCCAGTCAAAATAATTTTGCAT
tgtcaaatttggttctccattgttcTTACtatcaagtcaggatcgatggt
gacctcaccttaaaataaaaagaaatttaagtTCTAATTTGAGAGATATT
CTTTTTGCTGCACGAGCGCACTTTTTGTAGACTAGTTGGAACACCTCTTT
TTATTTGGGAGATTAATGGCAATTTTTCcttattgttattattaaaatga
agcacaaccgaaaagaaaagaaacccagaaagttgcgtatttccagtgag
tgaACAATTCtgtaaattgacaaaattgatgatgataaatTTTTTTCGCT
CAGCCAAATCTCTTGTATTAGGGGTTCTAGTCTTCAGCCCTAAGCCTATG
TGGGATTGAACAATTGGGTAAATGAGACAAAAGTAATTTCTGATGtcaaa
atttcttatacataacaTGTATTTGCATCTTTATCACAATTTAAAACTTA
GTTCtccagatttttttttttgatatttttttacatggtacctctggcga
tataacgttaagTAGTGTTTAAGTAGTGTTTTGTATATTGGTATTGTACA
CGTGTCTTTGCTTTGATAGAGaaaaaaatgcaattaaaatactaggaaaa
atcatttaattgtAAGAGGGTAAAGAGTAATACAATTACTGCAACCAATG
CTTAAACatgaaaaatcagcaaaaattagtcatttctttttccagtgtct
ataattaAATAGAATTAAAAATAGCaaaccaagtaaaaaaaacttataaG
ATAATTTTAagctgaaatttcaaatttgcgaTGGTGGTAATTAGTGATGT
GTATTAGGAATTCATTTTCACAATAAGCAAACAACCTTATTTCCTGCTTT
TATTTGTGGAAATCACTAAATCTTGTAGACAAATTTTCTGATATTAGTGG
TTTAGTTGCTAAAGATCTAAAGTTTTTTCGAAATCAGCTTTCAAAATTAT
AATCTCTTTTTTCCTACTGTGCAAAAATGAAAtcgtattttcttatttga
caTGCATTGCAATGAATTTATGTTTAATATCTTACTTAtggattttcctt
ttttgtttttaggtaattgattttgaaattggtatGTTGAGGCCATCCTT
AGGATTGAAAATTGAACAATCATCACATTCCGAGAATTCTAAAGGTAGGA
TCATATAACATTGGTAGAAAATTTGGTGGCAAAAAAGTAGGAAAAAATCG
CTGGTAACGAATTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018601-exon-sc0000303-1491911889:40491..40681 | TCONS_00018601-exon-sc0000303-1491911889:40491..40681 | Clytia hemisphaerica | exon |
| TCONS_00018601-exon-sc0000303-1510915933:40491..40681 | TCONS_00018601-exon-sc0000303-1510915933:40491..40681 | Clytia hemisphaerica | exon |
| TCONS_00018601-exon-sc0000303-1575043694:40491..40681 | TCONS_00018601-exon-sc0000303-1575043694:40491..40681 | Clytia hemisphaerica | exon |
| TCONS_00018601-exon-sc0000303-1491911889:49853..50006 | TCONS_00018601-exon-sc0000303-1491911889:49853..50006 | Clytia hemisphaerica | exon |
| TCONS_00018601-exon-sc0000303-1510915933:49853..50006 | TCONS_00018601-exon-sc0000303-1510915933:49853..50006 | Clytia hemisphaerica | exon |
| TCONS_00018601-exon-sc0000303-1575043694:49853..50006 | TCONS_00018601-exon-sc0000303-1575043694:49853..50006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000303 | supercontig | sc0000303:40491..50006 + |
Blast
The following BLAST results are available for this feature:
|
