XLOC_009005 (gene) - C. hemisphaerica

Overview
NameXLOC_009005
Unique NameXLOC_009005
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000226:330812..341438+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009005 ID=XLOC_009005|Name=XLOC_009005|organism=Clytia hemisphaerica|type=gene|length=10627bp|location=Sequence derived from alignment at sc0000226:330812..341438+ (Clytia hemisphaerica)
gtcccacattttcaggttggattttccattggattttatcttttttccaa ctaagaaaacttgaaatttccaaccttggaaatcgaaaattttttcctgt gggGGGTGTCTATATGAAAGCATATAAATCGATTTTTTCTAAAACTACTT TCTAAACGTAGATATTTGAGTAAAGTTAAAGTCTCAAAATATATATCTTT CGAATTTTGGTTCATACAACTTGTGAACCCTGAACCTGGGGGAGGCGCTC GATtcgaaaacgaccgtacgtgtggcctaaaattaggcctttgaaatcgg acccttacattacattacagagaagatttagcaaaattttaataagttTG GGTGAAAAATCGTCCCTTACGatgcattttcaggcaaaatatggtcaccC TTTTTTACACCCTTTGAGTggaatttttctcatctttcatcatttctttt tccgttacagtgcattttgggaagcttggaaaaaggcCACACGTACGGTA GGTAATTTACCTTGAGTGTCCCCCCCGGTCCTGGTCCCGCCAGTAATATG ATTACGTAATATTATGTATCACACACAACACATACATGCCACAGGAATTT TTTTAGGTCTACATAAATCATTAACTTTTCTTGTGCAACTTTTTGACAGA AGGGAAAAATAAACGAGAAAAGAATAAGAATAGAAAAGTAGgagaaataa aacaaaccagcaagaaatcatattttatgcaaaatttatttttcaaatca aaagttatggttaAAAAAAGGGGGAGAGAATTTTCCCTTTTCTCTGCTTT actaataaaatagatttaGATACTGAAGCTAGGGAAATATAAGAAAAATT GGCAGAAGTGAAGGAAGCAAAGGGAAATATGGTcactaaaaaaataaaga attgaaaaattgataataaaGACCTGATGGTTTAGAACAGGGCaaacctt tttttcaaataatacaACTAGATAGTGATTCATATGATTCAGAGTAGAAA TCCTTCTGAATTTTTCTCTAATGATCACCATTTTCTAACGATATGGGGAA TGAAGTGTGTAAAGATGGAGCACTCGATTCTAACTTAATACACCCACAAC CCAATAATACCAGTGGTTTTGCAGAGACTACAAAATTATCTGACAGATGT GGTGAAACACAGATTGCATCATTGACAGATATACACGATCCCGACGAAAC TAATGttcgaaaagaaaatgaaaatattgtctgTTCCAGTCCACTTGTGG TGCAAGAATTTCCAGACGATAAAAACAATGAAGAAAGTACCACAGAAAAT GTAAACTATTTGAAAATCGGTCGTGGACCTGATAGAGAGAATCCAAAGGT TGATTCTCAAAAGGTTGAAAATGAACATGATGCTACTCTACAACATAAAG CCCGTGAAGCTACTTCGCCACATAAAcgtcaaaagaaaaacttagtCAGC ATGGACAGCCTTGATACAGATATCCAAAGCCCACGATCAcggaaaaacag tttttcagaCCTCCAAAAAGAAGCTGTGCAGAAAATTAAACGTAAAACCT CCAACTTGGTCGCACCAAACAATCATGACATCGTGGTGTATTGCAAAACC TTGATTAACGTCAGCTTTCACGGGCAAGTTGTTTTGAAAGCTAAAATGGA ACTGTATCATTTGTTAGACGAAGGTATGAATGACCATTTCCGATGGATGA TAATTGCTTTTTTGAGACATGATGATAATTTCAGGCATTGCCAAAAGGAA ATTTGGAATGTTTTGTCCATAACACGGGTATCCTTGAAACTTACTCCCAA TTACTTACGCTGTAACTTTTTACCTACTTCGAACAGATTTTGAGTGAGTC GACAGACAGGGACAAAGATATATTATTTTAATAAGTTATATTTTCCCATC GACCATTATATTTAACTCTCCCAGTTCCCAGTAATATGTGTGTACCTCTC GACTTACAGGGATTATAAACACTGTCCAGTCTacgtactcttgtctcccg aatagacggggggNtttcaaatcaaaagttatggttaAAAAAAGGGGGAG AGAATTTTCCCTTTTCTCTGCTTTactaataaaatagatttaGATACTGA AGCTAGGGAAATATAAGAAAAATTGGCAGAAGTGAAGGAAGCAAAGGGAA ATATGGTcactaaaaaaataaagaattgaaaaattgataataaaGACCTG GTGGTTTAGAACAGGGCaaacctttttttcaaataatacaACTAGATAGT GATTCATATGATTCAGAGTAGAAATCCTTCTGAATTTTTCTCTAATGATC ACCATTTTCTAACGATATGGGGAATGAAGTGTGTAAAGATGGAGCACTCG ATTCTAACTTAATACACCCACAACCCAATAATACCAGTGGTTTTGCAGAG ACTACAAAATTATCTGACAGATGTGGTGAAACACAGATTGCATCATTGAC AGATATACACGATCCCGACGAAACTAATGttcgaaaagaaaatgaaaata ttgtctgTTCCAGTCCACTTGTGGTGCAAGAATTTCCAGACGATAAAAAC AATGAAGAAAGTACCACAGAAAATGTAAACTATTTGAAAATCGGTCGTGG ACCTGATAGAGAGAATCCAAAGGTTGATTCTCAAAAGGTTGAAAATGAAC ATGATGCTACTCTACAACATAAAGCCCGTGAAGCTACTTCGCCACATAAA cgtcaaaagaaaaacttagtCAGCATGGACAGCCTTGATACAGATATCCA AAGCCCACGATCAcggaaaaacagtttttcagaCCTCCAAAAAGAAGCTG TGCAGAAAATTAAACGTAAAACCTCCAACTTGGTCGCACCAAACAATCAT GACATCGTGGTGTATTGCAAAACCTTGATTAACGTCAGCTTTCACGGGCA AGTTGTTTTGAAAGCTAAAATGGAACTGTATCATTTGTTAGACGAAGGTA TGAATGACCATTTCCGATGGATGATAATTGCTTTTTTGAGACATGATGAT AATTTCAGGCATTGCCAAAAGGAAATTTGGAATGTTTTGTCCATAACACG GGTATCCTTGAAACTTACTCCCAATTACTTACGCTGTAACTTTTTACCTA CTTCGAACAGATTTTGAGTGAGTCGACAGACAGGGACAAAGATATATTAT TTTAATAAGTTATATTTTCCCATCGACCATTATATTTAACTCTCCCAGTT CCCAGTAATATGTGTGTACCTCTCGACTTACAGGGATTATAAACACTGTC CAGTCTacgtactcttgtctcccgaatagacggggggtccgaataagcag gggggtaggaaaattttctaatttctaataagtgggggatggaataagag gggggggggggaatttttttttttttttttttaacattaggggggggggg gttttttgggtttttttttttttttttttcttaacaattagcggggggac gtttattcgggagacaagagtagtatatatctttcttttgatataatttC AGGTGAATCGTTCACCTTGGCAGTATTACTGCAAAGTCTCCACAAGTTCT TGCAATCCTTCTCCAACGTTGATGACATCACTGGTGAAGAAGAGGAATAT CGGTATTACATCCAAGGATTAATGGAACGAAGGAACCAAAACGACATGGA GAAGTTCTGGAAAGATGCGATGAAATTCATTGATATTTATAAACAAAGAG GGGGTTAGTATTTCATTGTTTGCATTTATAACTTTACTCTTACGTTCCAA ATAAACGAGAGAGGATTCGAATAAACCTCCCCGGTGGTTGGGAAGTTTAA TagacggggggacctaattgtcAGGGGTTTTGTATTActgaaaacctaaa aacaaggtaaacaagacgactcagagtcgaaaatttcgcaaagtatttga ttatagtaggggccactatgtTGCGAAAAAGCTTCTCGTGTGCAGCAgat tgtgcaaagggattttatgattgaatattgttccttgagtgtaaagatca aaatttgagaggtgtgGCCGGGTGTGACCACCCACTGCCATGAAAACTgg cgtcattggttactatggcaaccaaagtaaaaagtcgttaaaattgaaaa attttgtttcatttgtaagagcatgaaaaactgataaagaaaaaggtcac aacttCACCattaaaataattcaataaataGAACGGGGCTATATAAAGCT CTAGCCCCGTTCTATTTATTGCATTATTTTGTCACCCAAATGTGAACTGT CCCAGTGTGACCAAGTTAGATATCAATATCTTtgactatttacaaaaata ttaaaatgtttaAACCTTgtaaataaatcaaaaacatagtttctcaatat ttcaaaaactttttattcatATAGATTGGTAACCTCTAATATATCTGTCA aattccaacggtatataacttTCTACTTTAGCATAACTTGGTGCTGagaa tttgtttgaaaagtaaagtatctacatacttttgagacgACAGACTTTAA TGACAGATACATAATATATACTCAATAAAAGTcaaaatctcaatcaaaca aaatcaaacacaatcaacttTGGCGGGCATTTATTTTGCTGATgccttga aaaattaaaattaaaatattactTTGAGATCAAAAAATAACTGTTTCAAG GCTCgaaaagcacaaatttggaaaattacataaatattttaaatttgatg gaaattaatttaaatttttaaggccaattttNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTATCAATA ACCAATCAATTTGTTCCAATATTCGATAGGTAATGAAGCCcattagaaaa ttttgagtattgATCATTGATTGGATTTGAATGATAGCATAACATTATCG AATACCTATCAATTACTGtacgttggtctaatgtcaacatcccccctcta atttcaacatccttctttaaagataggaataattGGAAGGACAGAATCGC TGaaggaaactatttttctttgcctaGCTATCAGAGAAGAAAATACCTTT TGTCTATAAGTGATCCCAACCtttctattattcctatctgtaaagaagga tgtcggaattagaacagggatgtcgacattaaaccaacttacggtaccag AAGGAATCGATATCCAGTCAATTGATTTGTTATCGATGTGTCATTGATAG AAAATGAATCAATTGTTTTGAGTGGGAGTCTGGCACTGTATAAAAAAGTT CGTCTTTTGAGTTATATATTTGATcaatcaaaactttcaaatccATTGTA CAGTATTCAATCATAGTTTATACAAATTTTACAGTAAGATTTTGATATAG ACTTCAACAACAGTCTTGCCGTTTTCCCTCGCATCCATATTTGGGTTGAC CGAGTGAAGGCTCGTACACtttccaagtgaaccgctgtgagtgggaatcg tAAACTTTGACGCCTGCGTAGCAATCAAGGTAACTTTTTCCAATCGATga ctaatcgataaataatcgatggaTTGAATATCGTTTGATTTAGATAATTG ATagacaatacacctttcccgtaattcgtaaaactaatgcgcgcaaatta ttttgatgctctccaccgtttggtctctggaggtaaacaaacccgttttt gcctgcgttcccttagggaaagttggttttttgagcttttcttcagttct gtcgaacaaattcctcaaattttagtatgttcaatctattcatgatatta taccacgctgaaaatattttgccaaaagaagatcgctgtcaaaagttaga ggcttaaatcccactttccctaacccctagcaggcaaaaacgcgtttttt acctcccaaacaattttatacacaaataTTCTAAAGATGTTCGATTCATC ACAATTGACAGCCAATTTATTCCAATCGATTAAAAAACCAATCTATTATC AGTTAGAATAGTCTTGATGATCGAAATCAATCGACATCCAATCAATCGGT TGGTTATCAATTAGTCATCGATTGACATTTCGAGCCTGGAAAATGACAAT TTAACACATCGCACCTACCTAGCTAGCAAAAGGTAACTTCTATCAGATTG ACACCCCTTGCTATAAATTCTTCTGTGAAATACTGAGTAAATGATTATCT GTCTTACAACACAACttaatcaaatatcaacaaataattctACTTGAAct tgtaaaaatgaagatcatacctGTCTGTGTTGTCTGTATTATTGTGTGTA GTGTCGATGGTGTAGTGATGTTCAAGAGCAACTCTAATTGTAAGATTCCT Atcactttattggtgcatttactaactacacaaacataaaatactatgct aaaagaaatataaacctctttaagtactctaaaaacatcaacatgataaa aatacaaaaatccagAGCAAGTCTGACAGCATAATAGAatctgccatttt gaaaaacgatATAAATGTTTACGAATGCTTGGTTCCACCTACCTTGCACT TTGCAGACtggaatcattaaattttattttagcgaGTGAGTCCATATGTT AGAATCttcgagaatgttctagaagtttcaactactttcgttttctaatt ttttttccgcacCACCGCCGCCACCGCGAAAGcctattgtaatactttcg ctaagcgaaattaataaaggCTAAAATTctggctatttagagcaaaatca GGGACCTTCTCTTtcacagctgaaaatattcttaaatccTTAAATAttcg gggggttggaaaattctcgaaaaattaacaagcagtggggcgtttatttg gaacctaagagtacgattcttttaattttctttcttttcacatttttcta TCTGTCTTCAGTGCTGTGCTGATCCCTCTGCTTTAAAATATGACTGATTC CGTGTGTTAAGGTAATGAAATAACCAAATGTATCCCAAATAGTCGTGGTA ATAATTTCGACTTCCATTCCATTTAAGACCCCATTAAACGTCTGTATTTA GCTAAATAGGATAAGTTATTCAATAACTTTCGCGTTGTTGCTACGCTCGT AATCTTTTGAAAGGCGCCAAAATATCAAAAGTGACTTCGCCTCCCATGTT TTCCCCAATTTTAACAAGTCATATAGAGTTACTGCATTCATTTGTTACAT AAAATTTGTTTGGCAACACTTATCATTTCTTTTTAGTACAATCAGAAGAT TTGAATCACACGAATTACTGGGGAACACGCCAACAATTACTTGCTGGTAA AGTTATTGCTGACCACGTGGACAAAAGCTATGGTTCACTGGATCCGATAT TTGGTATCCTCTTATGCCCTGTAGCTGGTGAGTTAAACATAAGATGAGCT CTTatttacatgtttttataaggaaaaactatataagaacataaggcttc gatggccaaattgttaagaacaagttaagaacattctaaggctttttgga ctctaaaacagtcaatttctaaagaaaatcaacaaaaatgttaaaaaatg gttaaaataaacaacaacaattttaggcttgaaactgagAAAGTTAAGAC AATCCGAAggcctcaaaaattttgaacgttcttatagaaaaacgtgtatt ggcTAAAAATTGACGTATAGTAGAGTCTATATCCTGAGTATCACATCGAG AGTCGATGTTCGATTCATCGGGAAAAAAGCATCCATGGCAGCCAGATCTT GTTCCAGACTTCAAAATCTGCCCCTTCAAGTAGTTCAGTATACTAAACTC GATACTAAAGACCATGTTCATACGTTACGGCCTCGTATTGTTCCGTAAAA AAACGTTCCTATACATACTGTGTGAACTTTAAGAATCGAAACATCAAACA CCATTACGGAgcgatacgaaaccgtaacTTCTGAAAATGGTCTAATATCT CAGACATCATGatgtttagtgacgtggtggtacccaaaaagttaaaaatc gaAATCCTTGCACTCTCACGCAGTGCTTTTACAAGCCTGGCGTTTTTTTT TGCCGAGAGGTATCACAGCGCGTAATCACAATTGCCGGTTGACTGAGACA GGAATGTATTGCAATCTGAACTGGAAATCAAAAGCAACGGACACGAGATA ATTTCATATAGGATCAAGaggaaattattatttttttgtttcgtttttgt TGTTGGCTGCATATTGCCTGCCTGTTTTTAGTCTATTTTGGAGGTTTGTA GCTTTTAaacctttaagtgccaatgtcagGTATATcggacatgggctata tagtttaatgcccagtttgatttagaaatcgtcaaaaaaatgcattaatt tgacaaaaatccctttttttagagatttttggtcaacgagtgaacCAAGa gcctccaaatttggccctgttttactttattctgttcTCTAgcaaattga tttgaagttttaccactttTACTGGACACCTTTCCGTCATTAATTCCTAT AATTCACTCCACACTTAGCCGCCACCCAccccgcccttcctaaatcggaa aagaaagaagagactctaagctctaagctatccaacgagctatgaacGAG CTTCAAAtaccttctagatccggagatataagcttTTTTCAGCAAAGACT TATTAAACAGTTTAAATCTACTCGGTTGAATAGtgtgattttaaaaatct taactAAAAGCCGCACAGAAAGAAGACCATCAAAGCTTCATGCCAAAAAC CCTGAGAAAATAAAACAGTTACCGGAAATTCGATCTGTCATTGTTGTTGT ACCTTATGACGTCAGTGATTAGAAAAGTTCCCAAAACTGtaatgatttta aaatgatGGCGATTTCGAAATCAAAGTCGAAACCACTCAAGATTACCACA TTACCCGATTTAAGTAGAGTCAAGTAGAGTCGTACATAAGTTTTAGCTAA GTGACGTCCGACAAATTAACTGTGGGGAATTTTCCAAATTCGcaattttt tcgttttctttattCCATTTGAAGGGAAACTTCACTTTCTGCTATTTCCA GTTTTCTGAAGTACATTTTATTAATTTGCTTTATTGCTTTAACATAAAGC TTTAGGTAATCATGTGATTATCTGCTATTATTgatctaaattttcaaaaa cggaAAATACTAATTTTGGTAATTTGATGAAAGACTTTTTCATTACGAGC ATTTCCATCTTACATCTCAATTTAATGCAATATTTTCACAACCAGTAATT CCGGTCAACCCTGATTTGTTTCCGGAAATAATAATCTGAGTTAGATTCTA AATGGAAAAGACCGTACAATTATGTTTAATTTTGGCCATCGAGTTTTCGT CGTACTGTCATTTTCTCTTCAAAGTTCAATTGATGGTATGTCTGActaaa ttcttttaaaagacatcattaaaaaaaaatttaacatctTGGAATTCAat cgaaagtttgactttcaggACTCCTGTGGCCATTCAATTGTATCAATCGG TACGCTCAATTTTATGTGAATTCCAAAAGTGCtatgaaaaagaaagcaaa actTTCTGTAGTTGCAAAAATTGTGGCCCTTTGAAGTTACTACCAGCTAC CTGTAATTTGACCCCTCTACTACGAGTATACTAGTAACCAGCAGTGAATG TGTCAACATATCTTCTGTCATTTGCTTATATAGCACTTTTAAACAAAATG AACAGCAATTTTCACGCGAATTTCCCCTTCATGTGTTGCACTTGcacaaa ttttaaaaaaatatttagtttattttgctttgtcagcatGAGGTGCCTCT CCtctctttatatttttttaattagacATCGCATTTCCTTTGTTTCAATA AGATATCCCAATACAAAAACTTAGAGGTTGTTACTCCTGCTTTGTTGGAT CGCCAAGTCTTAAGGATAATCTTTCCATTCAAGCCCAGGAAGAACCCAGT AGGGTTAACCAGGAATAgtgaatagtgaatttttttctactttattATTT CTGAACACAAATGTTTTCTGGACTAACTCGTTTCGATTGACACTTAGAtt ttatttgtttaattttcAGGGCGTGCAGGACCCGGAGACAGTGGTATAGT ACACAATATCTTATTCGATGATGATGGTCCACTTGCATACCACTCTGCAG CTCACGATGCTTTCGGTTACTTGATCACCCACCACGATGTTGGTCCTGGT TACAACTACCTTGGTGCATGCGGTGAGGTTCTGGATGCTTCCAGATGTAT GTCTGGTCAAATTTCTGGTTTACTGTTTTGGAAAGATGTTCTTAAGACTG ATAAAACTGATTACAAGTACGCTGTAACTTAACACTTTGTTATTCATACG CCAATATGTAAATTTAAATATTGACACAAATAATATATCTTAtgcaatta atgtaatttaattaCTTTATATGATAATAAtacaatttttgaaacaataa gGTAAACGATTTTCCTTTATAGTTTGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016103TCONS_00016103Clytia hemisphaericatranscript
TCONS_00016104TCONS_00016104Clytia hemisphaericatranscript
TCONS_00016105TCONS_00016105Clytia hemisphaericatranscript
TCONS_00016106TCONS_00016106Clytia hemisphaericatranscript
TCONS_00016107TCONS_00016107Clytia hemisphaericatranscript
TCONS_00016108TCONS_00016108Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016104-proteinTCONS_00016104-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:330812..341438 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37 0.34 0.38 0 9.89 6.13 8.36 11.03 9.45 9.69 9.68 7.88 7.76 5.76 1.79 1.07 3.09 3 3.45 3.07 4.88 5.75 1.58 2.03 9.79 11.59 1.08 0.62 0.23 0.23