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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016107 ID=TCONS_00016107|Name=TCONS_00016107|organism=Clytia hemisphaerica|type=transcript|length=1018bp
ACTCTACAACATAAAGCCCGTGAAGCTACTTCGCCACATAAAcgtcaaaa
gaaaaacttagtCAGCATGGACAGCCTTGATACAGATATCCAAAGCCCAC
GATCAcggaaaaacagtttttcagaCCTCCAAAAAGAAGCTGTGCAGAAA
ATTAAACGTAAAACCTCCAACTTGGTCGCACCAAACAATCATGACATCGT
GGTGTATTGCAAAACCTTGATTAACGTCAGCTTTCACGGGCAAGTTGTTT
TGAAAGCTAAAATGGAACTGTATCATTTGTTAGACGAAGTATTACTGCAA
AGTCTCCACAAGTTCTTGCAATCCTTCTCCAACGTTGATGACATCACTGG
TGAAGAAGAGGAATATCGGTATTACATCCAAGGATTAATGGAACGAAGGA
ACCAAAACGACATGGAGAAGTTCTGGAAAGATGCGATGAAATTCATTGAT
ATTTATAAACAAAGAGGGGTACAATCAGAAGATTTGAATCACACGAATTA
CTGGGGAACACGCCAACAATTACTTGCTGGTAAAGTTATTGCTGACCACG
TGGACAAAAGCTATGGTTCACTGGATCCGATATTTGGTATCCTCTTATGC
CCTGTAGCTGGGCGTGCAGGACCCGGAGACAGTGGTATAGTACACAATAT
CTTATTCGATGATGATGGTCCACTTGCATACCACTCTGCAGCTCACGATG
CTTTCGGTTACTTGATCACCCACCACGATGTTGGTCCTGGTTACAACTAC
CTTGGTGCATGCGGTGAGGTTCTGGATGCTTCCAGATGTATGTCTGGTCA
AATTTCTGGTTTACTGTTTTGGAAAGATGTTCTTAAGACTGATAAAACTG
ATTACAAGTACGCTGTAACTTAACACTTTGTTATTCATACGCCAATATGT
AAATTTAAATATTGACACAAATAATATATCTTAtgcaattaatgtaattt
aattaCTTTATATGATAATAAtacaatttttgaaacaataagGTAAACGA
TTTTCCTTTATAGTTTGC Run BLAST on NCBI transcript from alignment at sc0000226:332196..341438+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016107 ID=TCONS_00016107|Name=TCONS_00016107|organism=Clytia hemisphaerica|type=transcript|length=9243bp|location=Sequence derived from alignment at sc0000226:332196..341438+ (Clytia hemisphaerica)
ACTCTACAACATAAAGCCCGTGAAGCTACTTCGCCACATAAAcgtcaaaa
gaaaaacttagtCAGCATGGACAGCCTTGATACAGATATCCAAAGCCCAC
GATCAcggaaaaacagtttttcagaCCTCCAAAAAGAAGCTGTGCAGAAA
ATTAAACGTAAAACCTCCAACTTGGTCGCACCAAACAATCATGACATCGT
GGTGTATTGCAAAACCTTGATTAACGTCAGCTTTCACGGGCAAGTTGTTT
TGAAAGCTAAAATGGAACTGTATCATTTGTTAGACGAAGGTATGAATGAC
CATTTCCGATGGATGATAATTGCTTTTTTGAGACATGATGATAATTTCAG
GCATTGCCAAAAGGAAATTTGGAATGTTTTGTCCATAACACGGGTATCCT
TGAAACTTACTCCCAATTACTTACGCTGTAACTTTTTACCTACTTCGAAC
AGATTTTGAGTGAGTCGACAGACAGGGACAAAGATATATTATTTTAATAA
GTTATATTTTCCCATCGACCATTATATTTAACTCTCCCAGTTCCCAGTAA
TATGTGTGTACCTCTCGACTTACAGGGATTATAAACACTGTCCAGTCTac
gtactcttgtctcccgaatagacggggggNtttcaaatcaaaagttatgg
ttaAAAAAAGGGGGAGAGAATTTTCCCTTTTCTCTGCTTTactaataaaa
tagatttaGATACTGAAGCTAGGGAAATATAAGAAAAATTGGCAGAAGTG
AAGGAAGCAAAGGGAAATATGGTcactaaaaaaataaagaattgaaaaat
tgataataaaGACCTGGTGGTTTAGAACAGGGCaaacctttttttcaaat
aatacaACTAGATAGTGATTCATATGATTCAGAGTAGAAATCCTTCTGAA
TTTTTCTCTAATGATCACCATTTTCTAACGATATGGGGAATGAAGTGTGT
AAAGATGGAGCACTCGATTCTAACTTAATACACCCACAACCCAATAATAC
CAGTGGTTTTGCAGAGACTACAAAATTATCTGACAGATGTGGTGAAACAC
AGATTGCATCATTGACAGATATACACGATCCCGACGAAACTAATGttcga
aaagaaaatgaaaatattgtctgTTCCAGTCCACTTGTGGTGCAAGAATT
TCCAGACGATAAAAACAATGAAGAAAGTACCACAGAAAATGTAAACTATT
TGAAAATCGGTCGTGGACCTGATAGAGAGAATCCAAAGGTTGATTCTCAA
AAGGTTGAAAATGAACATGATGCTACTCTACAACATAAAGCCCGTGAAGC
TACTTCGCCACATAAAcgtcaaaagaaaaacttagtCAGCATGGACAGCC
TTGATACAGATATCCAAAGCCCACGATCAcggaaaaacagtttttcagaC
CTCCAAAAAGAAGCTGTGCAGAAAATTAAACGTAAAACCTCCAACTTGGT
CGCACCAAACAATCATGACATCGTGGTGTATTGCAAAACCTTGATTAACG
TCAGCTTTCACGGGCAAGTTGTTTTGAAAGCTAAAATGGAACTGTATCAT
TTGTTAGACGAAGGTATGAATGACCATTTCCGATGGATGATAATTGCTTT
TTTGAGACATGATGATAATTTCAGGCATTGCCAAAAGGAAATTTGGAATG
TTTTGTCCATAACACGGGTATCCTTGAAACTTACTCCCAATTACTTACGC
TGTAACTTTTTACCTACTTCGAACAGATTTTGAGTGAGTCGACAGACAGG
GACAAAGATATATTATTTTAATAAGTTATATTTTCCCATCGACCATTATA
TTTAACTCTCCCAGTTCCCAGTAATATGTGTGTACCTCTCGACTTACAGG
GATTATAAACACTGTCCAGTCTacgtactcttgtctcccgaatagacggg
gggtccgaataagcaggggggtaggaaaattttctaatttctaataagtg
ggggatggaataagaggggggggggggaatttttttttttttttttttaa
cattaggggggggggggttttttgggtttttttttttttttttttcttaa
caattagcggggggacgtttattcgggagacaagagtagtatatatcttt
cttttgatataatttCAGGTGAATCGTTCACCTTGGCAGTATTACTGCAA
AGTCTCCACAAGTTCTTGCAATCCTTCTCCAACGTTGATGACATCACTGG
TGAAGAAGAGGAATATCGGTATTACATCCAAGGATTAATGGAACGAAGGA
ACCAAAACGACATGGAGAAGTTCTGGAAAGATGCGATGAAATTCATTGAT
ATTTATAAACAAAGAGGGGGTTAGTATTTCATTGTTTGCATTTATAACTT
TACTCTTACGTTCCAAATAAACGAGAGAGGATTCGAATAAACCTCCCCGG
TGGTTGGGAAGTTTAATagacggggggacctaattgtcAGGGGTTTTGTA
TTActgaaaacctaaaaacaaggtaaacaagacgactcagagtcgaaaat
ttcgcaaagtatttgattatagtaggggccactatgtTGCGAAAAAGCTT
CTCGTGTGCAGCAgattgtgcaaagggattttatgattgaatattgttcc
ttgagtgtaaagatcaaaatttgagaggtgtgGCCGGGTGTGACCACCCA
CTGCCATGAAAACTggcgtcattggttactatggcaaccaaagtaaaaag
tcgttaaaattgaaaaattttgtttcatttgtaagagcatgaaaaactga
taaagaaaaaggtcacaacttCACCattaaaataattcaataaataGAAC
GGGGCTATATAAAGCTCTAGCCCCGTTCTATTTATTGCATTATTTTGTCA
CCCAAATGTGAACTGTCCCAGTGTGACCAAGTTAGATATCAATATCTTtg
actatttacaaaaatattaaaatgtttaAACCTTgtaaataaatcaaaaa
catagtttctcaatatttcaaaaactttttattcatATAGATTGGTAACC
TCTAATATATCTGTCAaattccaacggtatataacttTCTACTTTAGCAT
AACTTGGTGCTGagaatttgtttgaaaagtaaagtatctacatacttttg
agacgACAGACTTTAATGACAGATACATAATATATACTCAATAAAAGTca
aaatctcaatcaaacaaaatcaaacacaatcaacttTGGCGGGCATTTAT
TTTGCTGATgccttgaaaaattaaaattaaaatattactTTGAGATCAAA
AAATAACTGTTTCAAGGCTCgaaaagcacaaatttggaaaattacataaa
tattttaaatttgatggaaattaatttaaatttttaaggccaattttNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTTTTTATCAATAACCAATCAATTTGTTCCAATATTCGATAGGTAAT
GAAGCCcattagaaaattttgagtattgATCATTGATTGGATTTGAATGA
TAGCATAACATTATCGAATACCTATCAATTACTGtacgttggtctaatgt
caacatcccccctctaatttcaacatccttctttaaagataggaataatt
GGAAGGACAGAATCGCTGaaggaaactatttttctttgcctaGCTATCAG
AGAAGAAAATACCTTTTGTCTATAAGTGATCCCAACCtttctattattcc
tatctgtaaagaaggatgtcggaattagaacagggatgtcgacattaaac
caacttacggtaccagAAGGAATCGATATCCAGTCAATTGATTTGTTATC
GATGTGTCATTGATAGAAAATGAATCAATTGTTTTGAGTGGGAGTCTGGC
ACTGTATAAAAAAGTTCGTCTTTTGAGTTATATATTTGATcaatcaaaac
tttcaaatccATTGTACAGTATTCAATCATAGTTTATACAAATTTTACAG
TAAGATTTTGATATAGACTTCAACAACAGTCTTGCCGTTTTCCCTCGCAT
CCATATTTGGGTTGACCGAGTGAAGGCTCGTACACtttccaagtgaaccg
ctgtgagtgggaatcgtAAACTTTGACGCCTGCGTAGCAATCAAGGTAAC
TTTTTCCAATCGATgactaatcgataaataatcgatggaTTGAATATCGT
TTGATTTAGATAATTGATagacaatacacctttcccgtaattcgtaaaac
taatgcgcgcaaattattttgatgctctccaccgtttggtctctggaggt
aaacaaacccgtttttgcctgcgttcccttagggaaagttggttttttga
gcttttcttcagttctgtcgaacaaattcctcaaattttagtatgttcaa
tctattcatgatattataccacgctgaaaatattttgccaaaagaagatc
gctgtcaaaagttagaggcttaaatcccactttccctaacccctagcagg
caaaaacgcgttttttacctcccaaacaattttatacacaaataTTCTAA
AGATGTTCGATTCATCACAATTGACAGCCAATTTATTCCAATCGATTAAA
AAACCAATCTATTATCAGTTAGAATAGTCTTGATGATCGAAATCAATCGA
CATCCAATCAATCGGTTGGTTATCAATTAGTCATCGATTGACATTTCGAG
CCTGGAAAATGACAATTTAACACATCGCACCTACCTAGCTAGCAAAAGGT
AACTTCTATCAGATTGACACCCCTTGCTATAAATTCTTCTGTGAAATACT
GAGTAAATGATTATCTGTCTTACAACACAACttaatcaaatatcaacaaa
taattctACTTGAActtgtaaaaatgaagatcatacctGTCTGTGTTGTC
TGTATTATTGTGTGTAGTGTCGATGGTGTAGTGATGTTCAAGAGCAACTC
TAATTGTAAGATTCCTAtcactttattggtgcatttactaactacacaaa
cataaaatactatgctaaaagaaatataaacctctttaagtactctaaaa
acatcaacatgataaaaatacaaaaatccagAGCAAGTCTGACAGCATAA
TAGAatctgccattttgaaaaacgatATAAATGTTTACGAATGCTTGGTT
CCACCTACCTTGCACTTTGCAGACtggaatcattaaattttattttagcg
aGTGAGTCCATATGTTAGAATCttcgagaatgttctagaagtttcaacta
ctttcgttttctaattttttttccgcacCACCGCCGCCACCGCGAAAGcc
tattgtaatactttcgctaagcgaaattaataaaggCTAAAATTctggct
atttagagcaaaatcaGGGACCTTCTCTTtcacagctgaaaatattctta
aatccTTAAATAttcggggggttggaaaattctcgaaaaattaacaagca
gtggggcgtttatttggaacctaagagtacgattcttttaattttctttc
ttttcacatttttctaTCTGTCTTCAGTGCTGTGCTGATCCCTCTGCTTT
AAAATATGACTGATTCCGTGTGTTAAGGTAATGAAATAACCAAATGTATC
CCAAATAGTCGTGGTAATAATTTCGACTTCCATTCCATTTAAGACCCCAT
TAAACGTCTGTATTTAGCTAAATAGGATAAGTTATTCAATAACTTTCGCG
TTGTTGCTACGCTCGTAATCTTTTGAAAGGCGCCAAAATATCAAAAGTGA
CTTCGCCTCCCATGTTTTCCCCAATTTTAACAAGTCATATAGAGTTACTG
CATTCATTTGTTACATAAAATTTGTTTGGCAACACTTATCATTTCTTTTT
AGTACAATCAGAAGATTTGAATCACACGAATTACTGGGGAACACGCCAAC
AATTACTTGCTGGTAAAGTTATTGCTGACCACGTGGACAAAAGCTATGGT
TCACTGGATCCGATATTTGGTATCCTCTTATGCCCTGTAGCTGGTGAGTT
AAACATAAGATGAGCTCTTatttacatgtttttataaggaaaaactatat
aagaacataaggcttcgatggccaaattgttaagaacaagttaagaacat
tctaaggctttttggactctaaaacagtcaatttctaaagaaaatcaaca
aaaatgttaaaaaatggttaaaataaacaacaacaattttaggcttgaaa
ctgagAAAGTTAAGACAATCCGAAggcctcaaaaattttgaacgttctta
tagaaaaacgtgtattggcTAAAAATTGACGTATAGTAGAGTCTATATCC
TGAGTATCACATCGAGAGTCGATGTTCGATTCATCGGGAAAAAAGCATCC
ATGGCAGCCAGATCTTGTTCCAGACTTCAAAATCTGCCCCTTCAAGTAGT
TCAGTATACTAAACTCGATACTAAAGACCATGTTCATACGTTACGGCCTC
GTATTGTTCCGTAAAAAAACGTTCCTATACATACTGTGTGAACTTTAAGA
ATCGAAACATCAAACACCATTACGGAgcgatacgaaaccgtaacTTCTGA
AAATGGTCTAATATCTCAGACATCATGatgtttagtgacgtggtggtacc
caaaaagttaaaaatcgaAATCCTTGCACTCTCACGCAGTGCTTTTACAA
GCCTGGCGTTTTTTTTTGCCGAGAGGTATCACAGCGCGTAATCACAATTG
CCGGTTGACTGAGACAGGAATGTATTGCAATCTGAACTGGAAATCAAAAG
CAACGGACACGAGATAATTTCATATAGGATCAAGaggaaattattatttt
tttgtttcgtttttgtTGTTGGCTGCATATTGCCTGCCTGTTTTTAGTCT
ATTTTGGAGGTTTGTAGCTTTTAaacctttaagtgccaatgtcagGTATA
Tcggacatgggctatatagtttaatgcccagtttgatttagaaatcgtca
aaaaaatgcattaatttgacaaaaatccctttttttagagatttttggtc
aacgagtgaacCAAGagcctccaaatttggccctgttttactttattctg
ttcTCTAgcaaattgatttgaagttttaccactttTACTGGACACCTTTC
CGTCATTAATTCCTATAATTCACTCCACACTTAGCCGCCACCCAccccgc
ccttcctaaatcggaaaagaaagaagagactctaagctctaagctatcca
acgagctatgaacGAGCTTCAAAtaccttctagatccggagatataagct
tTTTTCAGCAAAGACTTATTAAACAGTTTAAATCTACTCGGTTGAATAGt
gtgattttaaaaatcttaactAAAAGCCGCACAGAAAGAAGACCATCAAA
GCTTCATGCCAAAAACCCTGAGAAAATAAAACAGTTACCGGAAATTCGAT
CTGTCATTGTTGTTGTACCTTATGACGTCAGTGATTAGAAAAGTTCCCAA
AACTGtaatgattttaaaatgatGGCGATTTCGAAATCAAAGTCGAAACC
ACTCAAGATTACCACATTACCCGATTTAAGTAGAGTCAAGTAGAGTCGTA
CATAAGTTTTAGCTAAGTGACGTCCGACAAATTAACTGTGGGGAATTTTC
CAAATTCGcaattttttcgttttctttattCCATTTGAAGGGAAACTTCA
CTTTCTGCTATTTCCAGTTTTCTGAAGTACATTTTATTAATTTGCTTTAT
TGCTTTAACATAAAGCTTTAGGTAATCATGTGATTATCTGCTATTATTga
tctaaattttcaaaaacggaAAATACTAATTTTGGTAATTTGATGAAAGA
CTTTTTCATTACGAGCATTTCCATCTTACATCTCAATTTAATGCAATATT
TTCACAACCAGTAATTCCGGTCAACCCTGATTTGTTTCCGGAAATAATAA
TCTGAGTTAGATTCTAAATGGAAAAGACCGTACAATTATGTTTAATTTTG
GCCATCGAGTTTTCGTCGTACTGTCATTTTCTCTTCAAAGTTCAATTGAT
GGTATGTCTGActaaattcttttaaaagacatcattaaaaaaaaatttaa
catctTGGAATTCAatcgaaagtttgactttcaggACTCCTGTGGCCATT
CAATTGTATCAATCGGTACGCTCAATTTTATGTGAATTCCAAAAGTGCta
tgaaaaagaaagcaaaactTTCTGTAGTTGCAAAAATTGTGGCCCTTTGA
AGTTACTACCAGCTACCTGTAATTTGACCCCTCTACTACGAGTATACTAG
TAACCAGCAGTGAATGTGTCAACATATCTTCTGTCATTTGCTTATATAGC
ACTTTTAAACAAAATGAACAGCAATTTTCACGCGAATTTCCCCTTCATGT
GTTGCACTTGcacaaattttaaaaaaatatttagtttattttgctttgtc
agcatGAGGTGCCTCTCCtctctttatatttttttaattagacATCGCAT
TTCCTTTGTTTCAATAAGATATCCCAATACAAAAACTTAGAGGTTGTTAC
TCCTGCTTTGTTGGATCGCCAAGTCTTAAGGATAATCTTTCCATTCAAGC
CCAGGAAGAACCCAGTAGGGTTAACCAGGAATAgtgaatagtgaattttt
ttctactttattATTTCTGAACACAAATGTTTTCTGGACTAACTCGTTTC
GATTGACACTTAGAttttatttgtttaattttcAGGGCGTGCAGGACCCG
GAGACAGTGGTATAGTACACAATATCTTATTCGATGATGATGGTCCACTT
GCATACCACTCTGCAGCTCACGATGCTTTCGGTTACTTGATCACCCACCA
CGATGTTGGTCCTGGTTACAACTACCTTGGTGCATGCGGTGAGGTTCTGG
ATGCTTCCAGATGTATGTCTGGTCAAATTTCTGGTTTACTGTTTTGGAAA
GATGTTCTTAAGACTGATAAAACTGATTACAAGTACGCTGTAACTTAACA
CTTTGTTATTCATACGCCAATATGTAAATTTAAATATTGACACAAATAAT
ATATCTTAtgcaattaatgtaatttaattaCTTTATATGATAATAAtaca
atttttgaaacaataagGTAAACGATTTTCCTTTATAGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016107-exon-sc0000226-1491911889:332196..332484 | TCONS_00016107-exon-sc0000226-1491911889:332196..332484 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1510915933:332196..332484 | TCONS_00016107-exon-sc0000226-1510915933:332196..332484 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1575043694:332196..332484 | TCONS_00016107-exon-sc0000226-1575043694:332196..332484 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1491911889:334335..334514 | TCONS_00016107-exon-sc0000226-1491911889:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1510915933:334335..334514 | TCONS_00016107-exon-sc0000226-1510915933:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1575043694:334335..334514 | TCONS_00016107-exon-sc0000226-1575043694:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1491911889:338198..338338 | TCONS_00016107-exon-sc0000226-1491911889:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1510915933:338198..338338 | TCONS_00016107-exon-sc0000226-1510915933:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1575043694:338198..338338 | TCONS_00016107-exon-sc0000226-1575043694:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1491911889:341031..341438 | TCONS_00016107-exon-sc0000226-1491911889:341031..341438 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1510915933:341031..341438 | TCONS_00016107-exon-sc0000226-1510915933:341031..341438 | Clytia hemisphaerica | exon |
| TCONS_00016107-exon-sc0000226-1575043694:341031..341438 | TCONS_00016107-exon-sc0000226-1575043694:341031..341438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:332196..341438 + |
Blast
The following BLAST results are available for this feature:
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