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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016108 ID=TCONS_00016108|Name=TCONS_00016108|organism=Clytia hemisphaerica|type=transcript|length=1018bp
ACTCTACAACATAAAGCCCGTGAAGCTACTTCGCCACATAAAcgtcaaaa
gaaaaacttagtCAGCATGGACAGCCTTGATACAGATATCCAAAGCCCAC
GATCAcggaaaaacagtttttcagaCCTCCAAAAAGAAGCTGTGCAGAAA
ATTAAACGTAAAACCTCCAACTTGGTCGCACCAAACAATCATGACATCGT
GGTGTATTGCAAAACCTTGATTAACGTCAGCTTTCACGGGCAAGTTGTTT
TGAAAGCTAAAATGGAACTGTATCATTTGTTAGACGAAGTATTACTGCAA
AGTCTCCACAAGTTCTTGCAATCCTTCTCCAACGTTGATGACATCACTGG
TGAAGAAGAGGAATATCGGTATTACATCCAAGGATTAATGGAACGAAGGA
ACCAAAACGACATGGAGAAGTTCTGGAAAGATGCGATGAAATTCATTGAT
ATTTATAAACAAAGAGGGGTACAATCAGAAGATTTGAATCACACGAATTA
CTGGGGAACACGCCAACAATTACTTGCTGGTAAAGTTATTGCTGACCACG
TGGACAAAAGCTATGGTTCACTGGATCCGATATTTGGTATCCTCTTATGC
CCTGTAGCTGGGCGTGCAGGACCCGGAGACAGTGGTATAGTACACAATAT
CTTATTCGATGATGATGGTCCACTTGCATACCACTCTGCAGCTCACGATG
CTTTCGGTTACTTGATCACCCACCACGATGTTGGTCCTGGTTACAACTAC
CTTGGTGCATGCGGTGAGGTTCTGGATGCTTCCAGATGTATGTCTGGTCA
AATTTCTGGTTTACTGTTTTGGAAAGATGTTCTTAAGACTGATAAAACTG
ATTACAAGTACGCTGTAACTTAACACTTTGTTATTCATACGCCAATATGT
AAATTTAAATATTGACACAAATAATATATCTTAtgcaattaatgtaattt
aattaCTTTATATGATAATAAtacaatttttgaaacaataagGTAAACGA
TTTTCCTTTATAGTTTGC Run BLAST on NCBI transcript from alignment at sc0000226:333470..341438+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016108 ID=TCONS_00016108|Name=TCONS_00016108|organism=Clytia hemisphaerica|type=transcript|length=7969bp|location=Sequence derived from alignment at sc0000226:333470..341438+ (Clytia hemisphaerica)
ACTCTACAACATAAAGCCCGTGAAGCTACTTCGCCACATAAAcgtcaaaa
gaaaaacttagtCAGCATGGACAGCCTTGATACAGATATCCAAAGCCCAC
GATCAcggaaaaacagtttttcagaCCTCCAAAAAGAAGCTGTGCAGAAA
ATTAAACGTAAAACCTCCAACTTGGTCGCACCAAACAATCATGACATCGT
GGTGTATTGCAAAACCTTGATTAACGTCAGCTTTCACGGGCAAGTTGTTT
TGAAAGCTAAAATGGAACTGTATCATTTGTTAGACGAAGGTATGAATGAC
CATTTCCGATGGATGATAATTGCTTTTTTGAGACATGATGATAATTTCAG
GCATTGCCAAAAGGAAATTTGGAATGTTTTGTCCATAACACGGGTATCCT
TGAAACTTACTCCCAATTACTTACGCTGTAACTTTTTACCTACTTCGAAC
AGATTTTGAGTGAGTCGACAGACAGGGACAAAGATATATTATTTTAATAA
GTTATATTTTCCCATCGACCATTATATTTAACTCTCCCAGTTCCCAGTAA
TATGTGTGTACCTCTCGACTTACAGGGATTATAAACACTGTCCAGTCTac
gtactcttgtctcccgaatagacggggggtccgaataagcaggggggtag
gaaaattttctaatttctaataagtgggggatggaataagaggggggggg
gggaatttttttttttttttttttaacattaggggggggggggttttttg
ggtttttttttttttttttttcttaacaattagcggggggacgtttattc
gggagacaagagtagtatatatctttcttttgatataatttCAGGTGAAT
CGTTCACCTTGGCAGTATTACTGCAAAGTCTCCACAAGTTCTTGCAATCC
TTCTCCAACGTTGATGACATCACTGGTGAAGAAGAGGAATATCGGTATTA
CATCCAAGGATTAATGGAACGAAGGAACCAAAACGACATGGAGAAGTTCT
GGAAAGATGCGATGAAATTCATTGATATTTATAAACAAAGAGGGGGTTAG
TATTTCATTGTTTGCATTTATAACTTTACTCTTACGTTCCAAATAAACGA
GAGAGGATTCGAATAAACCTCCCCGGTGGTTGGGAAGTTTAATagacggg
gggacctaattgtcAGGGGTTTTGTATTActgaaaacctaaaaacaaggt
aaacaagacgactcagagtcgaaaatttcgcaaagtatttgattatagta
ggggccactatgtTGCGAAAAAGCTTCTCGTGTGCAGCAgattgtgcaaa
gggattttatgattgaatattgttccttgagtgtaaagatcaaaatttga
gaggtgtgGCCGGGTGTGACCACCCACTGCCATGAAAACTggcgtcattg
gttactatggcaaccaaagtaaaaagtcgttaaaattgaaaaattttgtt
tcatttgtaagagcatgaaaaactgataaagaaaaaggtcacaacttCAC
CattaaaataattcaataaataGAACGGGGCTATATAAAGCTCTAGCCCC
GTTCTATTTATTGCATTATTTTGTCACCCAAATGTGAACTGTCCCAGTGT
GACCAAGTTAGATATCAATATCTTtgactatttacaaaaatattaaaatg
tttaAACCTTgtaaataaatcaaaaacatagtttctcaatatttcaaaaa
ctttttattcatATAGATTGGTAACCTCTAATATATCTGTCAaattccaa
cggtatataacttTCTACTTTAGCATAACTTGGTGCTGagaatttgtttg
aaaagtaaagtatctacatacttttgagacgACAGACTTTAATGACAGAT
ACATAATATATACTCAATAAAAGTcaaaatctcaatcaaacaaaatcaaa
cacaatcaacttTGGCGGGCATTTATTTTGCTGATgccttgaaaaattaa
aattaaaatattactTTGAGATCAAAAAATAACTGTTTCAAGGCTCgaaa
agcacaaatttggaaaattacataaatattttaaatttgatggaaattaa
tttaaatttttaaggccaattttNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTATCAATAACCAATCA
ATTTGTTCCAATATTCGATAGGTAATGAAGCCcattagaaaattttgagt
attgATCATTGATTGGATTTGAATGATAGCATAACATTATCGAATACCTA
TCAATTACTGtacgttggtctaatgtcaacatcccccctctaatttcaac
atccttctttaaagataggaataattGGAAGGACAGAATCGCTGaaggaa
actatttttctttgcctaGCTATCAGAGAAGAAAATACCTTTTGTCTATA
AGTGATCCCAACCtttctattattcctatctgtaaagaaggatgtcggaa
ttagaacagggatgtcgacattaaaccaacttacggtaccagAAGGAATC
GATATCCAGTCAATTGATTTGTTATCGATGTGTCATTGATAGAAAATGAA
TCAATTGTTTTGAGTGGGAGTCTGGCACTGTATAAAAAAGTTCGTCTTTT
GAGTTATATATTTGATcaatcaaaactttcaaatccATTGTACAGTATTC
AATCATAGTTTATACAAATTTTACAGTAAGATTTTGATATAGACTTCAAC
AACAGTCTTGCCGTTTTCCCTCGCATCCATATTTGGGTTGACCGAGTGAA
GGCTCGTACACtttccaagtgaaccgctgtgagtgggaatcgtAAACTTT
GACGCCTGCGTAGCAATCAAGGTAACTTTTTCCAATCGATgactaatcga
taaataatcgatggaTTGAATATCGTTTGATTTAGATAATTGATagacaa
tacacctttcccgtaattcgtaaaactaatgcgcgcaaattattttgatg
ctctccaccgtttggtctctggaggtaaacaaacccgtttttgcctgcgt
tcccttagggaaagttggttttttgagcttttcttcagttctgtcgaaca
aattcctcaaattttagtatgttcaatctattcatgatattataccacgc
tgaaaatattttgccaaaagaagatcgctgtcaaaagttagaggcttaaa
tcccactttccctaacccctagcaggcaaaaacgcgttttttacctccca
aacaattttatacacaaataTTCTAAAGATGTTCGATTCATCACAATTGA
CAGCCAATTTATTCCAATCGATTAAAAAACCAATCTATTATCAGTTAGAA
TAGTCTTGATGATCGAAATCAATCGACATCCAATCAATCGGTTGGTTATC
AATTAGTCATCGATTGACATTTCGAGCCTGGAAAATGACAATTTAACACA
TCGCACCTACCTAGCTAGCAAAAGGTAACTTCTATCAGATTGACACCCCT
TGCTATAAATTCTTCTGTGAAATACTGAGTAAATGATTATCTGTCTTACA
ACACAACttaatcaaatatcaacaaataattctACTTGAActtgtaaaaa
tgaagatcatacctGTCTGTGTTGTCTGTATTATTGTGTGTAGTGTCGAT
GGTGTAGTGATGTTCAAGAGCAACTCTAATTGTAAGATTCCTAtcacttt
attggtgcatttactaactacacaaacataaaatactatgctaaaagaaa
tataaacctctttaagtactctaaaaacatcaacatgataaaaatacaaa
aatccagAGCAAGTCTGACAGCATAATAGAatctgccattttgaaaaacg
atATAAATGTTTACGAATGCTTGGTTCCACCTACCTTGCACTTTGCAGAC
tggaatcattaaattttattttagcgaGTGAGTCCATATGTTAGAATCtt
cgagaatgttctagaagtttcaactactttcgttttctaattttttttcc
gcacCACCGCCGCCACCGCGAAAGcctattgtaatactttcgctaagcga
aattaataaaggCTAAAATTctggctatttagagcaaaatcaGGGACCTT
CTCTTtcacagctgaaaatattcttaaatccTTAAATAttcggggggttg
gaaaattctcgaaaaattaacaagcagtggggcgtttatttggaacctaa
gagtacgattcttttaattttctttcttttcacatttttctaTCTGTCTT
CAGTGCTGTGCTGATCCCTCTGCTTTAAAATATGACTGATTCCGTGTGTT
AAGGTAATGAAATAACCAAATGTATCCCAAATAGTCGTGGTAATAATTTC
GACTTCCATTCCATTTAAGACCCCATTAAACGTCTGTATTTAGCTAAATA
GGATAAGTTATTCAATAACTTTCGCGTTGTTGCTACGCTCGTAATCTTTT
GAAAGGCGCCAAAATATCAAAAGTGACTTCGCCTCCCATGTTTTCCCCAA
TTTTAACAAGTCATATAGAGTTACTGCATTCATTTGTTACATAAAATTTG
TTTGGCAACACTTATCATTTCTTTTTAGTACAATCAGAAGATTTGAATCA
CACGAATTACTGGGGAACACGCCAACAATTACTTGCTGGTAAAGTTATTG
CTGACCACGTGGACAAAAGCTATGGTTCACTGGATCCGATATTTGGTATC
CTCTTATGCCCTGTAGCTGGTGAGTTAAACATAAGATGAGCTCTTattta
catgtttttataaggaaaaactatataagaacataaggcttcgatggcca
aattgttaagaacaagttaagaacattctaaggctttttggactctaaaa
cagtcaatttctaaagaaaatcaacaaaaatgttaaaaaatggttaaaat
aaacaacaacaattttaggcttgaaactgagAAAGTTAAGACAATCCGAA
ggcctcaaaaattttgaacgttcttatagaaaaacgtgtattggcTAAAA
ATTGACGTATAGTAGAGTCTATATCCTGAGTATCACATCGAGAGTCGATG
TTCGATTCATCGGGAAAAAAGCATCCATGGCAGCCAGATCTTGTTCCAGA
CTTCAAAATCTGCCCCTTCAAGTAGTTCAGTATACTAAACTCGATACTAA
AGACCATGTTCATACGTTACGGCCTCGTATTGTTCCGTAAAAAAACGTTC
CTATACATACTGTGTGAACTTTAAGAATCGAAACATCAAACACCATTACG
GAgcgatacgaaaccgtaacTTCTGAAAATGGTCTAATATCTCAGACATC
ATGatgtttagtgacgtggtggtacccaaaaagttaaaaatcgaAATCCT
TGCACTCTCACGCAGTGCTTTTACAAGCCTGGCGTTTTTTTTTGCCGAGA
GGTATCACAGCGCGTAATCACAATTGCCGGTTGACTGAGACAGGAATGTA
TTGCAATCTGAACTGGAAATCAAAAGCAACGGACACGAGATAATTTCATA
TAGGATCAAGaggaaattattatttttttgtttcgtttttgtTGTTGGCT
GCATATTGCCTGCCTGTTTTTAGTCTATTTTGGAGGTTTGTAGCTTTTAa
acctttaagtgccaatgtcagGTATATcggacatgggctatatagtttaa
tgcccagtttgatttagaaatcgtcaaaaaaatgcattaatttgacaaaa
atccctttttttagagatttttggtcaacgagtgaacCAAGagcctccaa
atttggccctgttttactttattctgttcTCTAgcaaattgatttgaagt
tttaccactttTACTGGACACCTTTCCGTCATTAATTCCTATAATTCACT
CCACACTTAGCCGCCACCCAccccgcccttcctaaatcggaaaagaaaga
agagactctaagctctaagctatccaacgagctatgaacGAGCTTCAAAt
accttctagatccggagatataagcttTTTTCAGCAAAGACTTATTAAAC
AGTTTAAATCTACTCGGTTGAATAGtgtgattttaaaaatcttaactAAA
AGCCGCACAGAAAGAAGACCATCAAAGCTTCATGCCAAAAACCCTGAGAA
AATAAAACAGTTACCGGAAATTCGATCTGTCATTGTTGTTGTACCTTATG
ACGTCAGTGATTAGAAAAGTTCCCAAAACTGtaatgattttaaaatgatG
GCGATTTCGAAATCAAAGTCGAAACCACTCAAGATTACCACATTACCCGA
TTTAAGTAGAGTCAAGTAGAGTCGTACATAAGTTTTAGCTAAGTGACGTC
CGACAAATTAACTGTGGGGAATTTTCCAAATTCGcaattttttcgttttc
tttattCCATTTGAAGGGAAACTTCACTTTCTGCTATTTCCAGTTTTCTG
AAGTACATTTTATTAATTTGCTTTATTGCTTTAACATAAAGCTTTAGGTA
ATCATGTGATTATCTGCTATTATTgatctaaattttcaaaaacggaAAAT
ACTAATTTTGGTAATTTGATGAAAGACTTTTTCATTACGAGCATTTCCAT
CTTACATCTCAATTTAATGCAATATTTTCACAACCAGTAATTCCGGTCAA
CCCTGATTTGTTTCCGGAAATAATAATCTGAGTTAGATTCTAAATGGAAA
AGACCGTACAATTATGTTTAATTTTGGCCATCGAGTTTTCGTCGTACTGT
CATTTTCTCTTCAAAGTTCAATTGATGGTATGTCTGActaaattctttta
aaagacatcattaaaaaaaaatttaacatctTGGAATTCAatcgaaagtt
tgactttcaggACTCCTGTGGCCATTCAATTGTATCAATCGGTACGCTCA
ATTTTATGTGAATTCCAAAAGTGCtatgaaaaagaaagcaaaactTTCTG
TAGTTGCAAAAATTGTGGCCCTTTGAAGTTACTACCAGCTACCTGTAATT
TGACCCCTCTACTACGAGTATACTAGTAACCAGCAGTGAATGTGTCAACA
TATCTTCTGTCATTTGCTTATATAGCACTTTTAAACAAAATGAACAGCAA
TTTTCACGCGAATTTCCCCTTCATGTGTTGCACTTGcacaaattttaaaa
aaatatttagtttattttgctttgtcagcatGAGGTGCCTCTCCtctctt
tatatttttttaattagacATCGCATTTCCTTTGTTTCAATAAGATATCC
CAATACAAAAACTTAGAGGTTGTTACTCCTGCTTTGTTGGATCGCCAAGT
CTTAAGGATAATCTTTCCATTCAAGCCCAGGAAGAACCCAGTAGGGTTAA
CCAGGAATAgtgaatagtgaatttttttctactttattATTTCTGAACAC
AAATGTTTTCTGGACTAACTCGTTTCGATTGACACTTAGAttttatttgt
ttaattttcAGGGCGTGCAGGACCCGGAGACAGTGGTATAGTACACAATA
TCTTATTCGATGATGATGGTCCACTTGCATACCACTCTGCAGCTCACGAT
GCTTTCGGTTACTTGATCACCCACCACGATGTTGGTCCTGGTTACAACTA
CCTTGGTGCATGCGGTGAGGTTCTGGATGCTTCCAGATGTATGTCTGGTC
AAATTTCTGGTTTACTGTTTTGGAAAGATGTTCTTAAGACTGATAAAACT
GATTACAAGTACGCTGTAACTTAACACTTTGTTATTCATACGCCAATATG
TAAATTTAAATATTGACACAAATAATATATCTTAtgcaattaatgtaatt
taattaCTTTATATGATAATAAtacaatttttgaaacaataagGTAAACG
ATTTTCCTTTATAGTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016108-exon-sc0000226-1491911889:333470..333758 | TCONS_00016108-exon-sc0000226-1491911889:333470..333758 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1510915933:333470..333758 | TCONS_00016108-exon-sc0000226-1510915933:333470..333758 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1575043694:333470..333758 | TCONS_00016108-exon-sc0000226-1575043694:333470..333758 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1491911889:334335..334514 | TCONS_00016108-exon-sc0000226-1491911889:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1510915933:334335..334514 | TCONS_00016108-exon-sc0000226-1510915933:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1575043694:334335..334514 | TCONS_00016108-exon-sc0000226-1575043694:334335..334514 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1491911889:338198..338338 | TCONS_00016108-exon-sc0000226-1491911889:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1510915933:338198..338338 | TCONS_00016108-exon-sc0000226-1510915933:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1575043694:338198..338338 | TCONS_00016108-exon-sc0000226-1575043694:338198..338338 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1491911889:341031..341438 | TCONS_00016108-exon-sc0000226-1491911889:341031..341438 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1510915933:341031..341438 | TCONS_00016108-exon-sc0000226-1510915933:341031..341438 | Clytia hemisphaerica | exon |
| TCONS_00016108-exon-sc0000226-1575043694:341031..341438 | TCONS_00016108-exon-sc0000226-1575043694:341031..341438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000226 | supercontig | sc0000226:333470..341438 + |
Blast
The following BLAST results are available for this feature:
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