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Sequence
The following sequences are available for this feature:
gene from alignment at sc0000180:341516..352225+ Legend: gene Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_007857 ID=XLOC_007857|Name=XLOC_007857|organism=Clytia hemisphaerica|type=gene|length=10710bp|location=Sequence derived from alignment at sc0000180:341516..352225+ (Clytia hemisphaerica)
CTTGATTACATTGCTTCTGCGTTAAAAGTGTTCCAGTTGAGTCAGCTATA
ACCTCAGATCGGAGGAATACGGGGCTTGACAAACAAACACTTTGTGAGAT
TTGAAAATCTCACTTCAACTTTGAAGATCTTTCCTTCTCTCTGAGAAGAT
TAATGAATATGAATAGTCCTCAGGGTGGAAAACTCGTTGGGCTTTTCGCC
ATTTTTATTTTGCTTGCTGTTAATTTGACCGGATTACACGGGCAAGAGGA
AGGTATGTAAATTTTACTTTATTAGTCCAGGCATTTTGGGGCACTAACCC
TACTTTGTCACTGAAAAAGGTCTTCAACTTTttgtactcttgtctcccga
atagacgccccccgctaattgttaataaaaaaaatccacCCACCCgatct
tattaagaccccctgTAATTAATTTCGagtaattcaatattttattacag
tgtagaaagaccttaaacttgtgaaaattttcctttccgttagtattggt
tcttctGAGATTCCAATTATTATCAGGCTAATCTGAAGAATGAATTTTCC
AGTCTTATAGTTTTTCCTTATCTTTCCACCACATATGGGGTTTATATTAT
ACGGTCTTTTAATAAAGTTTCTTATCGTGTTTACGAATTTTCTACCTGTC
GAATTAAGAAATTTAGTAGGCCTTtttattataaattattttgagtgcaa
caaCTGCCTCGCTTATAAATCATTACAAAGGTTATTATTAGATCCCTATT
TTGAATCTTCCTGTGTAACTTTTATAAATGGAGTAAATATcttatcaata
ttttgaaaacgaggttaccgttgctcgtgacgtaatttaggaaaaggtct
attcagtTCTCATCAGTAAAAATTTTGTCATAAAGACCTTGAATGAATAT
ATTTTGACAGCCATCTTGTCGTCTATAGCAAAATTCGGTTCGGTATCACA
CATATTCTTTTCCCAGTTTTAAGCTCTATTTCGTCATGTTTGACAAGGAA
ATTTGGCAAATATCAtgatacccctgtgtcacagacccgctgggacccca
gccccactggaaagattgacaaaaatttcgtctcccgtgggaaaatacct
tagaaTTTCAGCCACActtaaaaatcaacttttatttcatccccattcga
aattcaatgttgccactgaattttttattattcttggaacaaaggaattt
ctataaccattggaatttcaaaaggaatttttatccccactgagcaAAAA
AGTTCCAACGGGGCTGTGAAACACGGGTGTATATGATACataaaaatatc
agaaaaattcCACACAAAATCCATCAAACTTGGATTGTTGGATTCATTtc
attctgcaaaatttcaaatactGAATAATAAAGGCTAACGATGAAATTCT
AACGATAAAGCTATATACAAACAAGGATGTTGAAATTTTATCAACCTTGG
GGTTATTTCTGTAAACCACAAACTTTAATCCAGCTGTCATTCCTCAATAA
ACCACAGTCTTTAGCCTATTTCACTCCAGAGAAACTACAACCTCCTGATC
TCTTCTTTCCTCTCTTCATTCCTCTCATTCAATTGGTTGTAGACTACCCC
CGGGGGTACTAGTGTTGGTAAATGAGGGGTATCTGCGGACGAGACCTCTG
AAAACCaccccttagagagacttttttgaaaaattttcctcgatttttga
caaaagttctacccttagagagacttttttataatttttttctctcgaaa
tcaaaaatatgtcctgaaaatcatgaattttccgacccttagaaagATTA
ATTTAAAACTGTctgatttttacgacccttagagagactatgaaaggtga
aaaaaccgacccttaccgtccgcacatacccagcacccatttttacCTAA
GTACTCCTCCCTCGGGTGACTACCCTGGTTCGCATTAGATTCGTCTTCAG
TTTTTTCCCAAATATTAAGAGAACTGTTTTGAAACCCCAAATATTCTATG
AAAGAAAGTCTTTTTGCATACGTATCCAACTATTTTAATGTCTGCTAGCT
GCCCCGAAGTTCAACAGTTTTTACCAAAAGCTACACCATATAATGAAGAA
TTCAAAGCGCacccaaaaaaatttcaaaatgaaatcatCCAGTAAAGAGT
ATTTCCTCGCCAATGATTTTATAGTCTGATTCTATGAGGGGGGTTTCGGC
TCATAATTCGGTTGAAAACAAGAAGTCGTGGTTGGGGGCGCCGTCTTTCG
AAGGATGTCGTGGTTGGGGGCGCCGACTCTCGACAGTCGTCGTGGGTGGA
AGCGGCGTCCTTCGAAGGTCGTCGTGGGACAGGTGGTCGTGGCACAGGAT
TTCGTGGGAGCctctctttcaattttttctggtcttctatttctcaatat
tttctagctggtccttaaaatatcacttaataTACCCACGCCGCCCTTCG
AGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCCACCCATCC
AAATTGTGAAGAGATTGAAATTCTAGCCTTCGGGCTTATACCTCAATTGG
TTAAACATACCTTacaggaagaaatttttttgtccAATATTTGTAAACTT
ATTTTGCAGTGATTGAACTGACTCATCGTAGTATACACTATAGGAAGCTG
TaggtttttttcaggttttcctaATTCTTTATCAAACACGAGAAAATGGC
ACAAGGTTTTAGGAAAAATTAGCCAAtttaatttggaaatacttagtTAT
CTCAAACTTCTGATTAAACTATAAATATTTGCATCAGATTGATGGAGGCT
TGAACATTGGCCAGGATGCTTTCTTTGTCAAGGTTCATTTTTAACACACT
ATATCTATCTGtctatgcaaaaaaaagaaagaaagaaaaataagcatatA
AGTTTTACTGTTGATTTCATGTTGTTtctttacaggcctttttttagtta
GCCTCTAAAGATTTAGATTTAGGCGTagtggtgtagtggttatcgtgctt
gacttctgtccaggaggctcgagttcgatacccaccgtggcactacgatt
cacttggcaagtgaatgttcCTTCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccatggctcggcagctcgcat
ctgcagggttgcaatgtctgcttgcgctgtgattcctactccaccgtggg
taggacccattccgatccatcggagggcatatctatctatctatctaaag
ATTTAGACTTTAGCCTCCAACCCAGTAACGGACTGTTCGccgtccccaac
cacgactctcgaaggtcgccgcactGTTCGCCGCCCCTAACCATgactct
cgaaggtcgccggACTGTTCAccgtccccaaccacgactctcgaaggtca
ccgcactgttcgccgtccccaaccacgactctcgaaggtcgccggACTGT
TCGCCGTCCCCAACCACGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCACTGTTCGGTG
GCTCTCGAAGGGCGGCGTGGGTAtattaagtgatattttaaggaccagct
agaaaatattgagaaatagaagaccagaaaaaaattgaaagagagGCTCC
CACGAAATCCTGTGCCACGACCACCTGTCCCACGACGACCTTCGAAGGAC
GCCGCTTCCACCCACGACGACTCTCGAGAGTCGGCGCCCCCAACCACGAC
ATCCTTCGAAAGACGGCGCCCCCAACCACGACTTCTTGTTTTCAACCGAA
TTATGAGCCGAAACCCCCTCATATGATTCTCTACTCACTTCTCTACTCTA
TTTATTGAATTAAAACCAATTAAACTATGTTGAAAATTATTCTAACTGTc
aaaaccaatgaagtataagcctgaACGGCTAGAattgaatctccttggta
ggatttgaagcctagCGCAGCCCGCCTGATTTTTCCACAAATGACaaaaa
tatcactcgaaaacaaaggatttggtagattcaatctgtcgtcaaaaata
cggcgcatatttcaaggcttcactttttcttgcacgagaaaggttaaaga
ttcgattctagcccttcaggcttatacttcattgatcaAAACATAAAAGN
TGAGCaaggttaaagattcgattctagcccttcaggcttatcTTCATTGA
TCAAAACATAAAAGTCAATGAAATTCTCGCGGCAAAACTTTCACCTCGTC
AATTTTCAACACTTCTAAAGTTGATACCATTCTCCAACAAGACTCTTTGC
CAAACAAATAAACATTATCGATGCGGAAACGTTTTTCACACATGCTTTTC
GAGATTACACTTCCAGACGTTTAAAGTATCAAAGCTTTTAACCTTTAACA
TATCAAAGATTTAACAAGGGCTTTCCTCTGAGATCTAATAATTTTTAAAG
GAATTTAATAcagtaaaactatttgaaataTTGGGCGAGCTCTTTTTTAG
AGAAAGTTTAAACCGATTTTCGTATATAAAACCTCATGTAATCGCCTCAT
GACAAAGGTGATTTTCACCCTTTATAAACCGTCccataaaggtttaaaaa
attgTCACATTCTTTTACCGCTTTTCTCCTTCATGTCTCGAAAATAATCG
TCTTCGCTTTTGTCGGTCAATTTTAGTAATACACCATTTTACAATCATTC
AAAAATGATCNATCTTCGCTTTTATGTCGGTCAATCTTTGAAATACACCA
TTTACAATCATTTAAAATTATCCCATTGTATACTAAGTATACACATGTAT
ACTAAGTGGataaagagggtaacttatttcttTCACACCCGGAAAAGGTG
GTGATTAAATTTGGTGGTTTTAAAAGcataattatatggttgattacatt
tagcttagatttgtaaaggacgagcggggcgataaaaccgtaatagcccc
gcttttttgtattcgccctgatgtaaacaaaaatttctattggttgaaag
aaaagtatcgtccgatattttgattggttaacaaaatatcgtacgaaatt
tttaGGCCAATCAAAATAAGCGATTAGCgaatagcgattgagtgttcttc
aattctttttttgaccatataattaacgcggaataacatggtttctcggg
tgattttggattaataaccctctaaaccatgttattactagtagtACAAA
TAGGCCAATTTAAGTACCcctaagatttttttaaatctgcaCTCCCCATA
TCCAATACCTGTCAGCGATTGCGCTTGATTATTGGAGGCAAAAAGACTTA
CGATTTATAAAGAGGCGTGTGAATATCAATCAAATGTTTGATAACTACCA
GCCATATCTCTTCGAAATTTATGAATGTTAAGCCTTTACCTCTGAGAAAA
CATACTAGAATTTCTTTTCATGTTATGGTCTTTTTGCCTCCAAAAAATTG
GGCGGTAAGTCAGGTGAGTAAATAAATGACGTATCATCACGAAAGCCCTC
TATCACTGAAGATTTAGACCTATGCAATCAGTTATTCGTATTAAATAAAG
ATTTAAAAGCCATATTAGTTTaattctttctttttgctttaGACCTACTA
TGCATACAACCTATCGATCTGGTATTCGCATTAGAGAGTTCTGGTCGAAT
TGCAGAACACCATGAAACAATCAAATCATTCACCGAGAACATTATCAATA
CTTTTGATATCGGTGCCCGTAAAACACACGTTAGTGTAGTCACATTCGGT
GATTTCGCGGACTTGCAGATCAAATTGACCGACAATTATGACAAGAACAA
CCTCATCAGAAAGGTATTGTTGATTTTTatgctttaaaggttttattttt
acataagtgtagCCGTTTCATATCTgaaacatatttcatatcaggagagt
gtcttcctattgttatattatggaaatataaacataaaaaatgtttctct
ttccCAATTTCTAatcatcttgctccacattcgtgtcaatccaataagaa
aaagcttgtaaattaaaattgataagtaagcaaacgatatcactctttat
acttaaaaacaaaacctttaaaagcaTTCAGGAAATAATAAGGGCAATCA
ACTAGCTTTTTTGAGTCGGAGGATAAAGAAATTCAGGTTTGTGTGGATTG
GACCTGTGACGACCGACtcttagagggaatttaatcgAAAAAGTGCTCTA
TAGAGACACTTAAAAGGGAAAAGACTATCATTGCTATCCGAACAAAGTTT
GGGAGGGATTTTAATGTGTCTTTAGATAAAAATTGTTGCCAAGAATCGTA
GAGCAAAAAGCGAAATATTTAGCATACTAATAGTGGTTTAGTTACTTTGT
ATTCGACTTTAACATTGATGGAGATTTTAACGagatttaaactttttgaa
caGAAATATAGATCTTGGTGcgatatttgtcaaaattttagcACCTTGAA
GGTTTTCTTTCCTAGTGAagtttcgaaaatatttttaatcactttcattt
ttcattcaggtcGAAAACCTGGTTCACCAAGGATCAGGCGGTACCGCAAC
CGATGATGTCATCCGTGTTTTACGTGATAGCGTATTCTCACCTTACNCCA
GGTGGTACCgcaaccgatgacgtcatccgTGTGTTACGTGATAGCGTGTT
CTCACCTTACGGACAATCACGTCAAGGCGTTGTCAAAGTTGTGATCTTAC
TCACGAACGGGAAATGTACATCTTGTACTGAAGAAATTTCCACTTTGGTC
AATCCTTTAAAAGATATGGGAATTGCTTTTTTCACTGTTGGTGTCACCGA
GAATATCGATTCTGATGAACTAAAAGCTATTGCTTCAGAACCCTACGAAC
ATTATGGTTTTGAGGTCTTTGATTTTGGAGGATTGAGTCGAATCATCAGC
TCAGTTGCAAGTAAAGTTTGCTCAGGTATAATTGTTTACTTTTACTAGTA
GTTGCCCTTTTAGCGATCCTAGATGATGCTAGGTTTTACCGAATGGCGAG
TATTAGCGAGTTTAAAAGTTTGTGTTTTTTTGCGACAGAGACGGTCACCT
TCTACATTGTCTAGATCTTGATCGACTGAGAACGACGGTAAGTTAGCACT
TTTACCGTATTCGATTTTGCGAATCAAAACTGCAGGtaattccaaatcgc
ttcagtcactccgccGTCCTCATAGGTTCAAATGCATAATCCCGCTATTT
ATATTTGAATAACAAGaatatatttgtatttttgacatttttactACCCG
TGGAGCAATCTTTCAcaaattttgatcgaaaataGGTCAAAAATATTCCG
GAAGTTTTGACCCTTTCAGAAAGTTGTTTCGTTATACTCAATCGCTGGTA
AATTTTATCATGCTTTTTGTTCCCTCTTTCACAGTAAACCGTGGCAAATG
CAGTAAACCAACACCACCATACGGCTGTGCAGGAGCAGGTCGAGATGAAT
GCAACTTTGATGGTGACTGTGTAAGGGCCACGAAATGTTGCTTTGATGGA
TGTGAACGTAAATGCAGCTACCCTATCGCTAGTAAGTAATTAAAAATGGT
TAGAGTTTTAAATAAAACACTACAATCCTGGActatttttttaccttttc
ccATCTTCAATGTTGATATGGAGGTTAGTGGAAGTTGCAAAATTCTTCGT
TCCTACATTGACATTGAGGGAAGGATAAGTGTGGGGATAGGGTTATCGGA
CAGCAGCTCTGTCCTCGATTGTAGGCTACCATGTATGTTAGTATACCTTT
TCTCTAATCATTGaagtttttttagaatcaatttcTATCAGTCCATCACC
AGAAAGGAGTAATGGCCTGTTCGTAGTTTGAGTTTAAGGCATGAATTTCC
taggaaaaactaaaaattcaaaaacctgGGGACCCTGTCTGTGTTTGATT
TTTGGAAACTGTTAGATACACACGGAGCAAAAATTAGTAAATCGTTTGAA
AAAGTGTGCTACAAAAAGAGAAAGAAGTAGCAGTGTCTTACtcttatagt
agggggaaatttgttcgtttttttgttgtcgctcgattgttttggtcaaa
gcacttaatatacatttttggaaagctaaggggtaggggttaatcaaaat
tattgatattaccaatattttaaaatttcatgattttgagatattttggg
aGACTACCAAAAGATTGAAAAAGGAGCTAATTACTAATGTTTATTATTCT
ACTACAGGTTCTTTCACACCGATGGACAtcgctttcgctttcgattCATC
CAACAATGTGCAATCAAAGACTTTTGAACAAATGAAACAATTCGCAATCA
ACATGGTCAAATCGTTCCACGTGTCACCTTATGATACTCGATTCGCCTCG
CTTACTTTCAGGTACTCTCTAAGATTCCATATCCAGTTGCCTCTCCTTAA
GTTGAACTTCGAACGGGGAatattatttgttcgaattacagagagattcg
aattatggaaagtaTTCTAAGAGTGTTTCTCTTTGACGGGGACTGGTAAT
AATTTCGGATTAGAGAAAAATTCGactaatagaagttcgaataaacgAGA
GTATACTATATTGAACTCTTTGTAGACCACTACAATCAGGGTCGAAATTT
GTTAACAAATtagggtattttaacgtttttcagaattgaAAGCTCGGGTG
TGGGTCGcgatttcagtacttccactttgtttaaTTAGACTTTTTGGTTA
GTGAGGGGCTTGGTGGCTGCCAGGCTAAATTCTCAGTCTtacatttttaa
gcttttagatcctgagataaagttaaaactctactttccaaccatACTTT
AAATTACTTgcggttttaaaattttgagggaattccccttttgtacCAAC
TACTGTGCCACCAATTTTAGcgtatataaaaaatattaaacttgaCTCAG
ACTTATCACGTATTCTCATAACTTGTAGCtaatgagcccccccccctcca
gTCAACtttcaaatcacgtaatcacgcaaaaaaaaatccaaatcacGTTC
TCATGAGATAAATTTTCCTCCGATCacgcactttaaaatcttaaatcacg
aaatcacgaacttggaaaaacgccaatcacgccatcacgaaaactgCTGG
GGGGCCTCGCTAATCTTTGTTCAGAAACCATGAACTATGAAAACAAATCA
GTACACGTGTTTGGTTAAtcttaaattctttcttttaGTGACGAATCCAG
CGTTGATTTCAACTTCGCACAATATGACCTTACTGCAGATATTATCCAAG
CTATCACACGTATCGGCCATCGACAAACAGACATTGATCTGGCAGCTgca
ttgaaaatgttgaaatctGACATTTTCAGCCTTCACGGACAAGTTCGAAC
AACAAGACCAATGGTGTTAGTTCTCTTCTATGACGGTGTGTATAATTTAT
GTTCCATACTTAtatggatttttttaaatcaggaaAAAATGTAAATGTGT
AGAAATggcgaaatttgcaaaaaaatcctccgaaaaattatttttatacc
tGGACAATGGactagcaaaaatcagtctttcaccccctgaaaattttaga
ataatcttttaacccctggaaaaataaaaatagcacTCTTAGACCCCGTG
GAAATTCTGCTCGAATtattcgtccaccccctgtataatGGAATAGCCCG
ATACATAATGGACATCAAATGACTTACAAGtgatttctaaatttttaatt
ttacagGGAATGATTCGAAGATTACTTCAAAAGATCTTCACGAGGCGGTC
ACTGAATTGAAAGATTATGGCGTCAAGATAGTCAATGTCGGAGTTGGGGC
ACAggtaaaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
The following polypeptide feature(s) derives from this gene:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000180 | supercontig | sc0000180:341516..352225 + |
Orthologs
The following orthologs are found for this feature:
| Ortholog Name | Description | Organism |
|---|
| COCH | cochlin precursor | Homo Sapiens |
| MATN4 | matrilin-4 isoform 1 precursor | Homo Sapiens |
| MATN1 | cartilage matrix protein precursor | Homo Sapiens |
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