XLOC_005380 (gene) - C. hemisphaerica

Overview
NameXLOC_005380
Unique NameXLOC_005380
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000097:615695..624108-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005380 ID=XLOC_005380|Name=XLOC_005380|organism=Clytia hemisphaerica|type=gene|length=8414bp|location=Sequence derived from alignment at sc0000097:615695..624108- (Clytia hemisphaerica)
AAGTATGTTGTCAGAGACAAATATGGCAAATCTTTTACCCTTGAGTTGCT GACAAACAGGAGCAAACTCTTCACATAAAAAAGTAAAAAAAATCTGTGTA CTCAGTATTACTTTGGGAAGGGGGTTCATAATTCTTTTCTTAATCATGTT TCGCTGCTAAGAAAGCAATAATATTAAGGTTTCTTTAATCGCCTGGGTGT TTAAAGTTGCACTTTATAAGAAATTGTGTTATCAGTAATCTGTAGTCTGC TAATTAAGGATAAAGGAAATATTTTTTCTCTAAACCTCTGTAAATGGACT CCCTAAACACATTCAAAGATTAGTTTTCTTGGATTTTCAGAACAAAGGAA CATGGTTTTGGTATAAGTCATTTACAATGGCTTTGTTTACGATGATTCCA AACGTCTCATAAAAAAGATTTTCAAATAGACCTTATGGATGATAGCGAAA TGTCTGAAAATGACTTGAAAAGGACCCTCTACAATGTGCATCGTTTTTCA TATTGGAATGTAATTACACAATGATATTTTTATTTACATATGTTCTATGA TAACTTAGTATCACTCTCATGAAAATCCCATGTGAAATCACCTCTTGATA GAGGAAAGCTATCCTAAACATCCTATCTCGCTTCTTTTTTTTTCACTCGC CGTCTACCACCTTGAATTTTGTTTGTTCTGTTGAATGCCGAAATTGTGCC TCCCATATTTCCATTTTTTGCTTCTTGCAAACATCCGTGGATGGGATATC CACGGTTGGATATTTCAGGGTTGAATTAATATATTATATATATAATAATA TATTTTTCGTATTTTTACATGCTTATTTTTTGAGATTTCAATAATAAACC ATAAAAAAAACATAACAGTTTGACATTCACTATTATTCTTAAGTTACTGT TATGGTCGGTTGGGCCCATCTGCCCGAGTTATTCTAAGCTTGAAAAAACT CTGAAAAGCTTTTTCAAGTTTAGAAGGCTTCATAATTATTCTTGTAAATG TTAGATTTTTTTCATAGTGTTTCACTGGTACTCATGTAAGGCTTTTTTCT CTTCTTTGAACTTTAGTTGCTTTAATCTGAATATTTTGATTTAATCAGTC TGCCCAAAACTTTAATTAAGGCGTATTTCCATTTGGAACACTTTCCAATT GAGGGTATATGAAGCAAATATGGAAAGGGGCAGTCCAGGACAAAAATCAC GTTTTGCCAACATATATCTTTTTCCAAGCACTAGATCGAGCTACCAACTT TATTAAAGATGGTGCATTATTTTGCTTCATTTAGAGACAAAATAGCTCAA TTTATTGTTTATGAGGCGTTGTGGTATAGTGGACATCAACCTTGATTCCT GTACAGGCAACAAAGGTTCGATTCCCACTCACAACTGTTCACTTGGCAAG TGAACAAACCTTTGCCCGGGTCAACCCATGCCATGTGAGGGGAATTGGGT AGTCAGTTCAAGGTGCTGACGGGATGCTTACTCAAAGCATCTATAGTTGC GAGAATGGGCTCCCAGAGCCTCTTCTAACTCAACCATAATAGATAGATAG ATAGATAGGGTTTTGTATAAGATATCTGTGGGTTTGCCCTTCAGCAAGGC ATAGTAACCCGAAGCTGTCTGATCGGGTAAGTGGTGAAGGCAGGAGCAGA TTGTGGGATAATGGTTGGTAGTTGATCCTCTGGTATCACCATTGACAAGC CAAGCTGACGAGTAAGATGTTTTTGTAAGAGATTTGGTGACCAAGTTGCA AGGTAATTACTGCAATTGTTTGTAGACCTGACCCACAAAAACATTGTTTC ATTTATATCGTAATCAAACTAATTATCCTATCCTGCATTAGTTGTCATAT AGTTCACCGAGGTTGTGTCTGGGAGAATTGGCCCTGGCTCCAGTTGAAAA ATGAACTATCATTTCCTCTATCCACCATCATGAAATCTTGAATGGACTAT GCTGGTTATTATAGTGCTAAAGAATTTAGTTGTCACATAACAACTTTAAC ATGGTATACCTGCTGAATGCTGGAAGACCACATAAAGTCTGCTTTCAGTG GCTCATTGAAGACACTAGCTTGGAATCCATTGCTGAACTCAAGACACAAA TGACGGGCATAGCTTTTTGGAGAAAGAGTAAAATAAGATTTGTTTGAGTA ATCAATCTATTCATGTAAATGGCTGTAAATGGCTGTGAAAGCCATCAAAA GTGGTCAGACATGACAGGAACCTTACCATCCTGTTTGTAAGGAGAATGCC AGCTTGTGTTCTTTTCTTTTTTTTCTTCTTTTTTTTTAGCTGGAAGGAGA GTATGTGTTTTAAGTTTGCAAAATTCATTCAGTTAAAGATTTTATATGAA AAGAATGTTTTCAAAGATTGATACAATCTTTCTTAAATTTAGATTTTACT ACATATCATGAATAAGATAGAAATACTGATCTTTATTGGCATTGTTCTAT ACAGCTACTATGTGTTGATTAATTTTCTGGAGAAAAGGTCATCTGTTAAA TTTTTGAACAAAACTCAACATACAGGTACTGTGGTTCTTGCACTCGGTGA TAGTTTGACAGAAGGGCTATACGATAGAGAAAAACTATTATTTCATGCAT ATACACTCGAACTGAAGAGGCTGTTGTCCAAGAATAAGAAAATCAAAGAT GATTTAACTTTAATCAATGCAGGTGTTAGTGGAGAAAGGACTTCACAAAT TCACAAACGCCTTTTGTCTCATCTTGTGTCATCGCAACAGTTTACGGTAG CTATTATTCTTGCTGGTACTAACGACTTTATGGACATAATAAGAAAAGTT GGTGAGAGTGAGACACATCTGAACGCAAGTTGTGTTGACTTAGCGAGACA AATTCAAGCACTTCATAACATGTGTCATAGTAAAAGCATCATGACTGTTT TACTAACAATACCTGAAATTACAAACGAACGGGATGACAAGCGGGATGTT TTTCAAAAATTCAAACACTGTAGAACTATTGTTAATTACCAATTGCGATC TTATGCTAATGGACTGCCACCTAAATTAACTGTTTTAGTAGACTTTGAGA AGTTCGTTTCCGATAAAACAGACAAAAAAGACGAAAGGGGAAAGTTTTGG TCAGATAATGTCCATTTTACCCCTTATGGTTACGACGAGATGGGATCTTT TATTTATAAGAAAATGAAATATATCTTATGAGAGAGTAAATATCTTGATT TTGCACAGGAACATCTGACAACCTTTAATACAAATTTGACTTTCGGAAAA TCTGATATTTTGTGATCTGATTCGTTNTATCTGACAATCTTTCATACAAA TTTGACTTTCGGAAAATCTGATATTTTGTGATCTGATTCGTTTTTAAGCA TTTTTAACCGTTGTAGATATTAAACCATTTGTATTTTTACATTTGATAAT ATTAATAATTTCATTTCTCGGGAAAATTACCTTTTCAAGTTAAAGCATGC GAGATTTGGACTTGATTCCCATTATCATCCTCTTCTCTAGCCATTTATAT GTATCATGCATAGCGATATCTCTTTGCCTTTGAGCGTTATTTACAATTAT ATCCATTGATTTTTCCATAGCTGTGAATAAACATAAAACATACATATAAA TTACACAATGGAGACCGTCATTGAGCAACAACGAAGATGCCACGAAGAGA GAGAACGACTGGAAGGCGGTATGACACAAGAATTGTTATTGAAAAAGAAC AATTTGAAAGAACAAATCAATTCGGATCATCGGGTTCACTTTCTGTTGGA TCGATATATGGAAGTCACTGGTAAGAATGTATTATTTTCATTATTTTATG TGAAGTAAAGTTTTCTTTCAGGAGAACTATTTTAGCTAAACACAAAGGTT TGTACGTCAGAATTACTTGTATTTTATGCATATTGTGAAACTGGTTTGGA AAAGACCAAAACTATGGACTCCTGGTTCACCACCTTTAGCTGATTACATT TACATCATTTTGCAGAAGAGAATACTTTCTTTTTTGAAATGCATGAAATT ATTGCGAACCTCATTTTCAAAGTATTGTTACCAACGGCGTCCGGCATTGC CAATGTTTGCCAGCGTTCGCGGTTTTGTATTATAATTGATAACAGTCTTT TGGGATAACATATTACATGACATGTGTGTAAATGTCTTTTAAAGAAACGT AGTTGTTACGTTTGAAAACGAGGCCTGCAATGATGTTGTTTTTCTGCAGA AGTGTGTAGTATTGACCAGATCATTGCGAGACGATGTTTGATTTCTTTTC ATCGACAGATAAATTGAAGAAGTACTACACTGATGACGACTCACTGAGAC AAGAAGAAATCAACTCCATCGCTGGTCCTAATGAATTTGCAGAATTTTAT GGTCGTTTGAGGACCATCAAACAATATCACCGCAAATACCCAAACGAAGT TGCTGAACCCATGCAAATGGAGTTCCTCAGGTTAGAATTTTCTTTTAAGC TTTTAAAGCATTCGGTTGAAGCTGTAAAGTACTCGTCAAATATCTATCCT TATGAAGGGGTCTTCGGCTTCATTAAACTGGATCTACAACGACGCCTGTA TATTTTACATGAATGATTTGTATTCATGATATGCACCATTGCAATGTCTT CAACAGACCTGTTAGGTCTGGTTGAAAAACTAATTGGTTGAAAGTGACGT ATTGACTGATTTTACGTCACTTACAACCAATCAGATATTGGGTCTGTGAT GTCATATCATTGCAATGGTGCATATCGTGAATAGTAAAAATTTGATACCA GAGCCGTGTTATAGTGCTCGATTATTTATTTAGTTACATCGTGATATGTC AAGTATTTTTGAGAGATATTCGACGAAATCATTTTCAAGGGGTCACCATT TGGTACCAAGACGTATATCTGCTCATTAAACTCTGTTTGATAGCAAACTA CTAAGTTGAGGTCTACAATGAGATTTTAACTCGCGACTTTTACATCACTA GTGCAACTGCTTTACCGACTGAGCTATTAAGTCCACACTGGAAGCTTGAT AATTTCGAAACTTTGTATCTTCACATTCTGCAGGTTGAAAGATTTACGTG AAAAGCCTGGCGAAGAACAAGAAGTTTTGGTCGAATTTTCAGACGAAGAA GGTTTCGGTAAATACCTGGACCTCCACGAAGCATACAACATGTACATCAA TCTCAAAGGAATCGAACACATTGATTATCTCACTTTCCTCATGTCTTTTG ACCGTTTGTTTGAAATCGCAAAAGAAAAGAAGAACCACGAATACAAGAAA TATTTGAACAAAGTGCTTGATTACTTGTATAGCTTTTTGCAGCGAACGAA ACCTCTTTTGAACCTGGAGAGGGAACTGAAAGAAGCTGATGAGGACTTTC AAAGCAAATACGAACACGGAAATTTCATGGGTTGGCCCAAAGAAACTGGA AGTGCACTTGCTCACTCAGGTACTTAAAGATTTAAAATTCCTTTTGGTGG TATATATTTAATAATAGATGTTTTTAAAGCAATCCAAAGAGTTTTAACTC AAAGCATTATACTAAAATTGCGCAGAAAAAGGTAGATTAAAATCGTTTAT AACACATGTTATACAAACAGTAGTGTTAATTTTCGATGCAATAATTGTTA TGGGATCATATATGTTTGTATTAAACAATTGATACCTTCAACCTTTCTGA AGATACCTCTCCTTCTTTTTATATTAAGTCGTCTAGCATGCTAAACTACG GCAACAAAGTGGAAAAATAAGGCAAATACGGTAACTGCATTAGCAAACAA ATAGTGTTAGAAATTTGATTTTTTTGTAGGTTTTATGTTATGTTATGCTT CATTTTTTCAGGTGCACATTTGGACCTTTCGGCTTTTTCCTCACCCGAAG AGTTGATGTCTCTTGGTTTGGATCGATTGAAATCAGCCTTACAGGCGTTG AGTATGAAATGTGGCGGAACATTAGAAGAAAGAGCAAAAAGACTATTTGG CACTAAAGGTGTCAGCCTGGAAGATTTAAAGTCGACACAGGGCGGAAAGA AAGGGCGTGGTAAAAGTAAAGGAATTGATAACGCCAAACGGCAAAGAGAA TTAGCAGCTCTAGAATCTCAGGTAAGCAGTATTTTCTATTTCTAGTTTTC CATGTTTTTACATTGTTTGTTCGATAATTTTCTACATATTCAGGGGTAGA CCTCATTTCATAGATAATATAGGTATTATGATACTATGACATGCACATTC AATTTATTTTGCAATATTTTCTCGCTTTCATAAGTAAGTCTTCTTTCTAT GTTTACAATTCTAAATTTTTTTCTTGAGCACTTAAGTTCGCATTTAGATC ACATTTGATGAATCAATTTAGCTTTTCTCCATCAGGTGTACCGGCTAGTT GAGTTGGTTGGCGAAGAACGGCAAGCGACGCGCGAGAACGTTGAACGGAA ACAAGCGCGTACGGCGAACGAACTAGAAGATGACGAAGAAGAAAATGCAT TGGATGAAGAAAGTGACGATGAAGAAGAACAAACGCTTTACAATCCAAAG AAACTCCCTCTCGGTATGTCTCATTGTTTCATCTCTCTTTTGACCTCGGA TACTGTATGTTCCTAAACAGCATTTTATGAAGATTCGATAATTGCGGAAC AGTCAATTCAACTGCATTTTTGCAGACAAATTCTTTTGATTTTCAGTTCT CAATTTCAGATTTTATAATTTCCATATTATATCTAGTACTAACGATTAGC TGGGACTGGTCTCTTAAAATTCTAACCCTGTATTTTTCTTTCCATTTCAT TACAGGCTGGGACGGGAAACCAATACCCTACTGGCTTTACAAATTACACG GCTTGAATCTCTATTACCCATGCGAAATTTGTGGCAATCAGAAATACAGA GGTCCAAAAGCTTTCCAAAGACATTTCTCAGAGTGGCGCCATGCGCATGG TATGCGTGTTTTGAACATACCTAACACAGCGCATTTCGCAAACGTCACAA AGATCGAAGACGCCCTTTCTCTTTGGGAGAAATTGAAAGAAGAGAAAGCT AAAGAGAGGTTCCAACCTGACGCGGACGAAGAATTCGAAGATTCTGTGGG AAATGTCGTTAATAAGAAAACTTTCGAAGATCTCTCTCGACAGGGATTAC TTTAAGCAATTCCCTAGGCTTACTCTTAGCATCTTTTTATGCTAGCAAAG AGTGCTACAATGTCAGAATTTTTATTATTGGGTATATACTACATACAACT GCTCTGAAAATGCATACTCGCAACTAGTAGCATAATGAATATATGGGTGA TATAAACCCAGTCACTATTCCAATTATATGAATTTATATGGAAGGAAAGA TCCCGATCCTGATCTTTCAACAATTCTTTTTATACCGACTTAAGAGGATT TTTNCATTGTTTCATCTCTCTTTTGACCTCGGATACTGTATGTTCTTAAA CAGCCTTTTATGAAGATTCGATAATTGTGGAACAGTCAATTCAACTACAT TTTTGCAGACAAATTCTTCTGATTTTCAGTTCTCAATTTCAGATTTAATA ATTTCCATATTATATCTAGTACTATCGATTAGCTGGGACTGGTCTCTTAA AATTCTAACCAGCTGTATTTTTCTTTCCATTTCATTACAGGCTGGGACGG GAAACCAATACCCTACTGGCTTTACAAATTACACGGCTTGAATCTCTATT ACCCATGCGAAATTTGTGGCAATCAGAAATACAGAGGTCCAAAAGCTTTC CAAAGACATTTCTCAGAGTGGCGCCATGCGCATGGTATGCGTGTTTTGAA CATACCTAACACAGCGCATTTCGCAAACGTCACAAAGATCGAAGACGCCC TTTCTCTTTGGGAGAAATTGAAAGAAGAGAAAGCTAAAGAGAGGTTCCAA CCTGACGCGGACGAAGAATTCGAAGATTCTGTGGGAAATGTCGTTAATAA GAAAACTTTCGAAGATCTCTCTCGACAGGGATTACTTTAAGCAATTCCCT AGGCTTACTCTTAGCATCTTTTTATGCTAGCAAAGAGTGCTACAATGTCA GAATTTTTATTATTGGGTATATACTACATACAACTGCTCTGAAAATGCAT ACTCGCAACTAGTAGCATAATGAATATATGGGTGATATAAACCCAGTCAC TATTCCAATTATATGAATTTATATGGAAGGAAAGATCCCGATCCTGATCT TTCAACAATTCTTTTTATACCGACTTAAGAGGATTTTTCTTGTTTTATGA TTTTACTGACCCTTCTTTGGACTTTAAAATCTTACCAGCCAAGTATGGTA GGAAAGTAACTCAAGTAACTTTCATTGGATATGCAGTTTATTTTTTAGAT CGTATTGACTCTAAATGTGTCTAGATACCAGAAAATATTATACGAGAACT TCTTTAACAAGAAATGTGCTGATTGATTTAGAAATATGGAAAATGAGATT AGGTTTCATCTGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009644TCONS_00009644Clytia hemisphaericatranscript
TCONS_00009643TCONS_00009643Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009644-proteinTCONS_00009644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:615695..624108 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SF3A3splicing factor 3A subunit 3 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.87 35.97 24.16 21.67 31.23 24.16 27.34 28.46 22.37 22.66 20.34 18.31 14.35 17.03 16.36 16.31 21.73 19.75 11.01 11.13 14.22 14.33 26.12 23.75 23.36 23.42 14.96 14.67 17.35 18.12