TCONS_00009643 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009643
Unique NameTCONS_00009643
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009643 ID=TCONS_00009643|Name=TCONS_00009643|organism=Clytia hemisphaerica|type=transcript|length=5590bp
AAGTATGTTGTCAGAGACAAATATGGCAAATCTTTTACCCTTGAGTTGct
gacaaacaggagcaaactcttcacataaaaaagtaaaaaaaatctgTGTA
CTCAGTATTACTTTGGGAAGGGGGTTCATAATTCTTTTCTTAATCATGTT
TCGCTGCTAAGAAAGCAATAATATTAAGGTTTCTTTAATCGCCTGGGTGT
TTAAAGTTGCACTTTATAAGAAATTGTGTTATCAGTAATCTGTAGTCTGC
TAATTAAGgataaaggaaatattttttctctaaaCCTCTGTAAATGGACT
CCCTAAACACATTCAAAGATTAGTTTTCTTGGATTTTCAGAACAAAGGAA
CATGGTTTTGGTATAAGTCATTTACAATGGCTTTGTTTACGATGATTCCA
AACGtctcataaaaaagattttcaaatagaCCTTATGGATGATAGcgaaa
tgtctgaaaatgacttGAAAAGGACCCTCTACAATGTGCATCGTTTTTCA
TATTGGAATGTAATTACACAATGATATTTTTATTTACATATGTTCTATGA
TAACTTAGTATCACTCTCATGAAAATCCCATGTGAAATCACCTCTTGATA
GAGGAAAGCTATCCTAAACATCCTATctcgcttctttttttttcactcgC
CGTCTACCACCTTGAATTTTGTTTGTTCTGTTGAATGCCGAAATTGTGCC
TCCCATATTTCCATTTTTTGCTTCTTGCAAACATCCGTGGATGGGATATC
CACGGTTGGATATTTCAGGGTTGAAttaatatattatatatataataata
tatttttcgtatttttacatgcttattttttgagatttcaataataaacc
ataaaaaaaacataacagTTTGACATTCACTATTATTCTTAAGTTACTGT
TATGGTCGGTTGGGCCCATCTGCCCGAGTTATTCTAAGCTTGAAAAAACT
CTGAAAAGCTTTTTCAAGTTTAGAAGGCTTCATAATTATTCTTGTAAatg
ttagatttttttcatagtgTTTCACTGGTACTCATGTAAGGcttttttct
cttctttgaaCTTTAGTTGCTTTAAtctgaatattttgatttaatcaGTC
TGCCCAAAACTTTAATTAAGGCGTATTTCCATTTGGAACACTTTCCAATT
GAGGGTATATGAAGCAAATATGGAAAGGGGCAGTCCAGGACAAAAATCAC
GTTTTGCCAACATATATCTTTTTCCAAGCACTAGATCGAGCTACCAACTT
TATTAAAGATggtgcattattttgcttcatttaGAGACAAAATAGCTCAA
TTTATTGTTTATGAggcgttgtggtatagtggacatcaaccttgattcct
gtacaggcaacaaaggttcgattcccactcacaactgttcacttggcaag
tgaacaaacctttgcccgggtcaacccatgccatgtgaggggaattgggt
agtcagttcaaggtgctgacgggatgcttactcaaagcatctatagttgc
gagaatgggctcccagagcctcttctaactcaaccataatagatagatag
atagatagggttttgtataagatatctgtgggttTGCCCTTCAGCAAGGC
ATAGTAACCCGAAGCTGTCTGATCGGGTAAGTGGTGAAGGCAGGAGCAGA
TTGTGGGATAATGGTTGGTAGTTGATCCTCTGGTATCACCATTGACAAGC
CAAGCTGACGAGTAAGATGTTTTTGTAAGAGATTTGGTGACCAAGTTGCA
AGGTAATTACTGCAATTGTTTGTAGACCTGACCcacaaaaacattgtttc
aTTTATATCGTAATCAAACTAATTATCCTATCCTGCATTAGTTGTCATAT
AGTTCACCGAGGTTGTGTCTGGGAGAATTGGCCCTGGCTCCAGTTGAAAA
ATGAACTATCATTTCCTCTATCCACCATCATGAAATCTTGAATGGACTAT
GCTGGTTATTATAGTGCTAAAGAATTTAGTTGTCACATAACAACTTTAAC
ATGGTATACCTGCTGAATGCTGGAAGACCACATAAAGTCTGCTTTCAGTG
GCTCATTGAAGACACTAGCTTGGAATCCATTGCTGAACTCAAGACACAAA
TGACGGGCATAGCTTTTTGGAGAAAGAGTAAAATAAGATTTGTTTGAGTA
ATCAATCTATTCATGTAAATGGCTGTAAATGGCTGTGAAAGCCATCAAAA
GTGGTCAGACATGACAGGAACCTTACCATCCTGTTTGTAAGGAGAATGCC
AGCTtgtgttcttttcttttttttcttctttttttttagctGGAAGGAGA
GTATGTGTTTTAAGTTTGCAAAATTCATTCAGTTAAAGATTTTATATGAA
AAGAATGTTTTCAAAGATTGATACAATCTTTCTTAAATTTAGATTTTAct
acatatcatgaataagataGAAATACTGATCTTTATTGGCATTGTTCTAT
ACAGCTACTATGTGTTGATTAATTTTCTGGAGAAAAGGTCATCTgttaaa
tttttgaacaaaactcaacatACAGGTACTGTGGTTCTTGCACTCGGTGA
TAGTTTGACAGAAGGGCTATACGATAGAGAAAAACTATTATTTCATGCAT
ATACACTCGAACTGAAGAGGCTGTTGTCCAAGAataagaaaatcaaagat
gatttAACTTTAATCAATGCAGGTGTTAGTGGAGAAAGGACTTCACAAAT
TCACAAACGCCTTTTGTCTCATCTTGTGTCATCGCAACAGTTTACGGTAG
CTATTATTCTTGCTGGTACTAACGACTTTATGGACATAATAAGAAAAGTT
GGTGAGAGTGAGACACATCTGAACGCAAGTTGTGTTGACTTAGCGAGACA
AATTCAAGCACTTCATAACATGTGTCATAGTAAAAGCATCATGACTGTTT
TACTAACAATACCTGAAATTACAAACGAACGGGATGACAAGCGggatgtt
tttcaaaaattcaaacacTGTAGAACTATTGTTAATTACCAATTGCGATC
TTATGCTAATGGACTGCCACCTAAATTAACTGTTTTAGTAGACTTTGAGA
AGTTCGTTTCCgataaaacagacaaaaaagaCGAAAGGGGAAAGTTTTGG
TCAGATAATGTCCATTTTACCCCTTATGGTTACGACGAGATGGGatcttt
tatttataagaaaatgaaatatatCTTATGAGAGAGTAAATATCTTGATT
TTGCACAGGAACATCTGACAACCTTTAATACAAATTTGACTTTCGGAAAA
TCTGATATTTTGTGATCTGATTCGTTNTATCTGACAATCTTTCATACAAA
TTTGACTTTCGGAAAATCTGATATTTTGTGATCTGATtcgtttttaagca
tttttaacCGTTGTAGATATTAAACCATTTGTATTTTTACATTTGATAAT
ATTAATAATTTCATTTCTCGGGAAAATTACCTTTTCAAGTTAAAGCATGC
GAGATTTGGACTTGATTCCCATTATCATCCTCTTCTCTAGCCATTTATAT
GTATCATGCATAGCGATATCTCTTTGCCTTTGAGCGTTATTTACAATTAT
ATCCATTGATTTTTCCATAGCTGTGAATAAACATAAAACATACATATAAA
TTACACAATGGAGACCGTCATTGAGCAACAACGAAGATGCCACGAAGAGA
GAGAACGACTGGAAGGCGGTATGACACAAGAATTGTTAttgaaaaagaac
aatttgaaaGAACAAATCAATTCGGATCATCGGGTTCACTTTCTGTTGGA
TCGATATATGGAAGTCACTGATAAATTGAAGAAGTACTACACTGATGACG
ACTCACTGAGACAAGAAGAAATCAACTCCATCGCTGGTCCTAATGAATTT
GCAGAATTTTATGGTCGTTTGAGGACCATCAAACAATATCACCGCAAATA
CCCAAACGAAGTTGCTGAACCCATGCAAATGGAGTTCCTCAGGTTGAAAG
ATTTACGTGAAAAGCCTGGCGAAGAACAAGAAGTTTTGGTCGAATTTTCA
GACGAAGAAGGTTTCGGTAAATACCTGGACCTCCACGAAGCATACAACAT
GTACATCAATCTCAAAGGAATCGAACACATTGATTATCTCACTTTCCTCA
TGTCTTTTGACCGTTTGTTTGAAATcgcaaaagaaaagaagaaccacgaa
tacaagaaatatttgaacAAAGTGCTTGATTACTTGTATAGCTTTTTGCA
GCGAACGAAACCTCTTTTGAACCTGGAGAGGGAACTGAAAGAAGCTGATG
AGGACTTTCAAAGCAAATACGAACACGGAAATTTCATGGGTTGGCCCAAA
GAAACTGGAAGTGCACTTGCTCACTCAGGTGCACATTTGGACCTTTCGGC
TTTTTCCTCACCCGAAGAGTTGATGTCTCTTGGTTTGGATCGATTGAAAT
CAGCCTTACAGGCGTTGAGTATGAAATGTGGCGGAACATTAGAAGAAAGA
GCAAAAAGACTATTTGGCACTAAAGGTGTCAGCCTGGAAGATTTAAAGTC
GACACAGGGCGGAAAGAAAGGGCGTGGTAAAAGTAAAGGAATTGATAACG
CCAAACGGCAAAGAGAATTAGCAGCTCTAGAATCTCAGGTGTACCGGCTA
GTTGAGTTGGTTGGCGAAGAACGGCAAGCGACGCGCGAGAACGTTGAACG
GAAACAAGCGCGTACGGCGAACGAACTAGAAgatgacgaagaagaaaatg
caTTGGATGAAGAAAGTGACGATGAAGAAGAACAAACGCTTTACAATCCA
AAGAAACTCCCTCTCGGCTGGGACGGGAAACCAATACCCTACTGGCTTTA
CAAATTACACGGCTTGAATCTCTATTACCCATGCGAAATTTGTGGCAATC
AGAAATACAGAGGTCCAAAAGCTTTCCAAAGACATTTCTCAGAGTGGCGC
CATGCGCATGGTATGCGTGTTTTGAACATACCTAACACAGCGCATTTCGC
AAACGTCACAAAGATCGAAGACGCCCTTTCTCTTTGGGAGAAATTGAAAG
AAGAGAAAGCTAAAGAGAGGTTCCAACCTGACGCGGACGAAGAATTCGAA
GATTCTGTGGGAAATGTCGTTAATAAGAAAACTTTCGAAGATCTCTCTCG
ACAGGGATTACTTTAAGCAATTCCCTAGGCTTACTCTTAGCATCTTTTTA
TGCTAGCAAAGAGTGCTACAATGTCAGAATTTTTATTATTGGGTATATAC
TACATACAACTGCTCTGAAAATGCATACTCGCAACTAGTAGCATAATGAA
TATATGGGTGATATAAACCCAGTCACTATTCCAATTATATGAATTTATAT
GGAAGGAAAGATCCCGATCCTGATCTTTCAACAATTCTTTTTATACCGAC
TTAAGAggatttttcttgttttatgaTTTTACTGACCCTTCTTTGGACTT
TAAAATCTTACCAGCCAAGTATGGTAGGAAAGTAACTCAAGTAACTTTCA
TTGGATATGCAGTTTATTTTTTAGATCGTATTGACTCTAAATGTGTCTAG
ATACCAGAAAATATTATACGAGAACTTCTTTAACAAGAAATGTGCTGATT
GATTTAGAAATATGGAAAATGAGATTAGGTTTCATCTGAC
Run BLAST on NCBI

transcript from alignment at sc0000097:615695..624108-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009643 ID=TCONS_00009643|Name=TCONS_00009643|organism=Clytia hemisphaerica|type=transcript|length=8414bp|location=Sequence derived from alignment at sc0000097:615695..624108- (Clytia hemisphaerica)
AAGTATGTTGTCAGAGACAAATATGGCAAATCTTTTACCCTTGAGTTGCT
GACAAACAGGAGCAAACTCTTCACATAAAAAAGTAAAAAAAATCTGTGTA
CTCAGTATTACTTTGGGAAGGGGGTTCATAATTCTTTTCTTAATCATGTT
TCGCTGCTAAGAAAGCAATAATATTAAGGTTTCTTTAATCGCCTGGGTGT
TTAAAGTTGCACTTTATAAGAAATTGTGTTATCAGTAATCTGTAGTCTGC
TAATTAAGGATAAAGGAAATATTTTTTCTCTAAACCTCTGTAAATGGACT
CCCTAAACACATTCAAAGATTAGTTTTCTTGGATTTTCAGAACAAAGGAA
CATGGTTTTGGTATAAGTCATTTACAATGGCTTTGTTTACGATGATTCCA
AACGTCTCATAAAAAAGATTTTCAAATAGACCTTATGGATGATAGCGAAA
TGTCTGAAAATGACTTGAAAAGGACCCTCTACAATGTGCATCGTTTTTCA
TATTGGAATGTAATTACACAATGATATTTTTATTTACATATGTTCTATGA
TAACTTAGTATCACTCTCATGAAAATCCCATGTGAAATCACCTCTTGATA
GAGGAAAGCTATCCTAAACATCCTATCTCGCTTCTTTTTTTTTCACTCGC
CGTCTACCACCTTGAATTTTGTTTGTTCTGTTGAATGCCGAAATTGTGCC
TCCCATATTTCCATTTTTTGCTTCTTGCAAACATCCGTGGATGGGATATC
CACGGTTGGATATTTCAGGGTTGAATTAATATATTATATATATAATAATA
TATTTTTCGTATTTTTACATGCTTATTTTTTGAGATTTCAATAATAAACC
ATAAAAAAAACATAACAGTTTGACATTCACTATTATTCTTAAGTTACTGT
TATGGTCGGTTGGGCCCATCTGCCCGAGTTATTCTAAGCTTGAAAAAACT
CTGAAAAGCTTTTTCAAGTTTAGAAGGCTTCATAATTATTCTTGTAAATG
TTAGATTTTTTTCATAGTGTTTCACTGGTACTCATGTAAGGCTTTTTTCT
CTTCTTTGAACTTTAGTTGCTTTAATCTGAATATTTTGATTTAATCAGTC
TGCCCAAAACTTTAATTAAGGCGTATTTCCATTTGGAACACTTTCCAATT
GAGGGTATATGAAGCAAATATGGAAAGGGGCAGTCCAGGACAAAAATCAC
GTTTTGCCAACATATATCTTTTTCCAAGCACTAGATCGAGCTACCAACTT
TATTAAAGATGGTGCATTATTTTGCTTCATTTAGAGACAAAATAGCTCAA
TTTATTGTTTATGAGGCGTTGTGGTATAGTGGACATCAACCTTGATTCCT
GTACAGGCAACAAAGGTTCGATTCCCACTCACAACTGTTCACTTGGCAAG
TGAACAAACCTTTGCCCGGGTCAACCCATGCCATGTGAGGGGAATTGGGT
AGTCAGTTCAAGGTGCTGACGGGATGCTTACTCAAAGCATCTATAGTTGC
GAGAATGGGCTCCCAGAGCCTCTTCTAACTCAACCATAATAGATAGATAG
ATAGATAGGGTTTTGTATAAGATATCTGTGGGTTTGCCCTTCAGCAAGGC
ATAGTAACCCGAAGCTGTCTGATCGGGTAAGTGGTGAAGGCAGGAGCAGA
TTGTGGGATAATGGTTGGTAGTTGATCCTCTGGTATCACCATTGACAAGC
CAAGCTGACGAGTAAGATGTTTTTGTAAGAGATTTGGTGACCAAGTTGCA
AGGTAATTACTGCAATTGTTTGTAGACCTGACCCACAAAAACATTGTTTC
ATTTATATCGTAATCAAACTAATTATCCTATCCTGCATTAGTTGTCATAT
AGTTCACCGAGGTTGTGTCTGGGAGAATTGGCCCTGGCTCCAGTTGAAAA
ATGAACTATCATTTCCTCTATCCACCATCATGAAATCTTGAATGGACTAT
GCTGGTTATTATAGTGCTAAAGAATTTAGTTGTCACATAACAACTTTAAC
ATGGTATACCTGCTGAATGCTGGAAGACCACATAAAGTCTGCTTTCAGTG
GCTCATTGAAGACACTAGCTTGGAATCCATTGCTGAACTCAAGACACAAA
TGACGGGCATAGCTTTTTGGAGAAAGAGTAAAATAAGATTTGTTTGAGTA
ATCAATCTATTCATGTAAATGGCTGTAAATGGCTGTGAAAGCCATCAAAA
GTGGTCAGACATGACAGGAACCTTACCATCCTGTTTGTAAGGAGAATGCC
AGCTTGTGTTCTTTTCTTTTTTTTCTTCTTTTTTTTTAGCTGGAAGGAGA
GTATGTGTTTTAAGTTTGCAAAATTCATTCAGTTAAAGATTTTATATGAA
AAGAATGTTTTCAAAGATTGATACAATCTTTCTTAAATTTAGATTTTACT
ACATATCATGAATAAGATAGAAATACTGATCTTTATTGGCATTGTTCTAT
ACAGCTACTATGTGTTGATTAATTTTCTGGAGAAAAGGTCATCTGTTAAA
TTTTTGAACAAAACTCAACATACAGGTACTGTGGTTCTTGCACTCGGTGA
TAGTTTGACAGAAGGGCTATACGATAGAGAAAAACTATTATTTCATGCAT
ATACACTCGAACTGAAGAGGCTGTTGTCCAAGAATAAGAAAATCAAAGAT
GATTTAACTTTAATCAATGCAGGTGTTAGTGGAGAAAGGACTTCACAAAT
TCACAAACGCCTTTTGTCTCATCTTGTGTCATCGCAACAGTTTACGGTAG
CTATTATTCTTGCTGGTACTAACGACTTTATGGACATAATAAGAAAAGTT
GGTGAGAGTGAGACACATCTGAACGCAAGTTGTGTTGACTTAGCGAGACA
AATTCAAGCACTTCATAACATGTGTCATAGTAAAAGCATCATGACTGTTT
TACTAACAATACCTGAAATTACAAACGAACGGGATGACAAGCGGGATGTT
TTTCAAAAATTCAAACACTGTAGAACTATTGTTAATTACCAATTGCGATC
TTATGCTAATGGACTGCCACCTAAATTAACTGTTTTAGTAGACTTTGAGA
AGTTCGTTTCCGATAAAACAGACAAAAAAGACGAAAGGGGAAAGTTTTGG
TCAGATAATGTCCATTTTACCCCTTATGGTTACGACGAGATGGGATCTTT
TATTTATAAGAAAATGAAATATATCTTATGAGAGAGTAAATATCTTGATT
TTGCACAGGAACATCTGACAACCTTTAATACAAATTTGACTTTCGGAAAA
TCTGATATTTTGTGATCTGATTCGTTNTATCTGACAATCTTTCATACAAA
TTTGACTTTCGGAAAATCTGATATTTTGTGATCTGATTCGTTTTTAAGCA
TTTTTAACCGTTGTAGATATTAAACCATTTGTATTTTTACATTTGATAAT
ATTAATAATTTCATTTCTCGGGAAAATTACCTTTTCAAGTTAAAGCATGC
GAGATTTGGACTTGATTCCCATTATCATCCTCTTCTCTAGCCATTTATAT
GTATCATGCATAGCGATATCTCTTTGCCTTTGAGCGTTATTTACAATTAT
ATCCATTGATTTTTCCATAGCTGTGAATAAACATAAAACATACATATAAA
TTACACAATGGAGACCGTCATTGAGCAACAACGAAGATGCCACGAAGAGA
GAGAACGACTGGAAGGCGGTATGACACAAGAATTGTTATTGAAAAAGAAC
AATTTGAAAGAACAAATCAATTCGGATCATCGGGTTCACTTTCTGTTGGA
TCGATATATGGAAGTCACTGGTAAGAATGTATTATTTTCATTATTTTATG
TGAAGTAAAGTTTTCTTTCAGGAGAACTATTTTAGCTAAACACAAAGGTT
TGTACGTCAGAATTACTTGTATTTTATGCATATTGTGAAACTGGTTTGGA
AAAGACCAAAACTATGGACTCCTGGTTCACCACCTTTAGCTGATTACATT
TACATCATTTTGCAGAAGAGAATACTTTCTTTTTTGAAATGCATGAAATT
ATTGCGAACCTCATTTTCAAAGTATTGTTACCAACGGCGTCCGGCATTGC
CAATGTTTGCCAGCGTTCGCGGTTTTGTATTATAATTGATAACAGTCTTT
TGGGATAACATATTACATGACATGTGTGTAAATGTCTTTTAAAGAAACGT
AGTTGTTACGTTTGAAAACGAGGCCTGCAATGATGTTGTTTTTCTGCAGA
AGTGTGTAGTATTGACCAGATCATTGCGAGACGATGTTTGATTTCTTTTC
ATCGACAGATAAATTGAAGAAGTACTACACTGATGACGACTCACTGAGAC
AAGAAGAAATCAACTCCATCGCTGGTCCTAATGAATTTGCAGAATTTTAT
GGTCGTTTGAGGACCATCAAACAATATCACCGCAAATACCCAAACGAAGT
TGCTGAACCCATGCAAATGGAGTTCCTCAGGTTAGAATTTTCTTTTAAGC
TTTTAAAGCATTCGGTTGAAGCTGTAAAGTACTCGTCAAATATCTATCCT
TATGAAGGGGTCTTCGGCTTCATTAAACTGGATCTACAACGACGCCTGTA
TATTTTACATGAATGATTTGTATTCATGATATGCACCATTGCAATGTCTT
CAACAGACCTGTTAGGTCTGGTTGAAAAACTAATTGGTTGAAAGTGACGT
ATTGACTGATTTTACGTCACTTACAACCAATCAGATATTGGGTCTGTGAT
GTCATATCATTGCAATGGTGCATATCGTGAATAGTAAAAATTTGATACCA
GAGCCGTGTTATAGTGCTCGATTATTTATTTAGTTACATCGTGATATGTC
AAGTATTTTTGAGAGATATTCGACGAAATCATTTTCAAGGGGTCACCATT
TGGTACCAAGACGTATATCTGCTCATTAAACTCTGTTTGATAGCAAACTA
CTAAGTTGAGGTCTACAATGAGATTTTAACTCGCGACTTTTACATCACTA
GTGCAACTGCTTTACCGACTGAGCTATTAAGTCCACACTGGAAGCTTGAT
AATTTCGAAACTTTGTATCTTCACATTCTGCAGGTTGAAAGATTTACGTG
AAAAGCCTGGCGAAGAACAAGAAGTTTTGGTCGAATTTTCAGACGAAGAA
GGTTTCGGTAAATACCTGGACCTCCACGAAGCATACAACATGTACATCAA
TCTCAAAGGAATCGAACACATTGATTATCTCACTTTCCTCATGTCTTTTG
ACCGTTTGTTTGAAATCGCAAAAGAAAAGAAGAACCACGAATACAAGAAA
TATTTGAACAAAGTGCTTGATTACTTGTATAGCTTTTTGCAGCGAACGAA
ACCTCTTTTGAACCTGGAGAGGGAACTGAAAGAAGCTGATGAGGACTTTC
AAAGCAAATACGAACACGGAAATTTCATGGGTTGGCCCAAAGAAACTGGA
AGTGCACTTGCTCACTCAGGTACTTAAAGATTTAAAATTCCTTTTGGTGG
TATATATTTAATAATAGATGTTTTTAAAGCAATCCAAAGAGTTTTAACTC
AAAGCATTATACTAAAATTGCGCAGAAAAAGGTAGATTAAAATCGTTTAT
AACACATGTTATACAAACAGTAGTGTTAATTTTCGATGCAATAATTGTTA
TGGGATCATATATGTTTGTATTAAACAATTGATACCTTCAACCTTTCTGA
AGATACCTCTCCTTCTTTTTATATTAAGTCGTCTAGCATGCTAAACTACG
GCAACAAAGTGGAAAAATAAGGCAAATACGGTAACTGCATTAGCAAACAA
ATAGTGTTAGAAATTTGATTTTTTTGTAGGTTTTATGTTATGTTATGCTT
CATTTTTTCAGGTGCACATTTGGACCTTTCGGCTTTTTCCTCACCCGAAG
AGTTGATGTCTCTTGGTTTGGATCGATTGAAATCAGCCTTACAGGCGTTG
AGTATGAAATGTGGCGGAACATTAGAAGAAAGAGCAAAAAGACTATTTGG
CACTAAAGGTGTCAGCCTGGAAGATTTAAAGTCGACACAGGGCGGAAAGA
AAGGGCGTGGTAAAAGTAAAGGAATTGATAACGCCAAACGGCAAAGAGAA
TTAGCAGCTCTAGAATCTCAGGTAAGCAGTATTTTCTATTTCTAGTTTTC
CATGTTTTTACATTGTTTGTTCGATAATTTTCTACATATTCAGGGGTAGA
CCTCATTTCATAGATAATATAGGTATTATGATACTATGACATGCACATTC
AATTTATTTTGCAATATTTTCTCGCTTTCATAAGTAAGTCTTCTTTCTAT
GTTTACAATTCTAAATTTTTTTCTTGAGCACTTAAGTTCGCATTTAGATC
ACATTTGATGAATCAATTTAGCTTTTCTCCATCAGGTGTACCGGCTAGTT
GAGTTGGTTGGCGAAGAACGGCAAGCGACGCGCGAGAACGTTGAACGGAA
ACAAGCGCGTACGGCGAACGAACTAGAAGATGACGAAGAAGAAAATGCAT
TGGATGAAGAAAGTGACGATGAAGAAGAACAAACGCTTTACAATCCAAAG
AAACTCCCTCTCGGTATGTCTCATTGTTTCATCTCTCTTTTGACCTCGGA
TACTGTATGTTCCTAAACAGCATTTTATGAAGATTCGATAATTGCGGAAC
AGTCAATTCAACTGCATTTTTGCAGACAAATTCTTTTGATTTTCAGTTCT
CAATTTCAGATTTTATAATTTCCATATTATATCTAGTACTAACGATTAGC
TGGGACTGGTCTCTTAAAATTCTAACCCTGTATTTTTCTTTCCATTTCAT
TACAGGCTGGGACGGGAAACCAATACCCTACTGGCTTTACAAATTACACG
GCTTGAATCTCTATTACCCATGCGAAATTTGTGGCAATCAGAAATACAGA
GGTCCAAAAGCTTTCCAAAGACATTTCTCAGAGTGGCGCCATGCGCATGG
TATGCGTGTTTTGAACATACCTAACACAGCGCATTTCGCAAACGTCACAA
AGATCGAAGACGCCCTTTCTCTTTGGGAGAAATTGAAAGAAGAGAAAGCT
AAAGAGAGGTTCCAACCTGACGCGGACGAAGAATTCGAAGATTCTGTGGG
AAATGTCGTTAATAAGAAAACTTTCGAAGATCTCTCTCGACAGGGATTAC
TTTAAGCAATTCCCTAGGCTTACTCTTAGCATCTTTTTATGCTAGCAAAG
AGTGCTACAATGTCAGAATTTTTATTATTGGGTATATACTACATACAACT
GCTCTGAAAATGCATACTCGCAACTAGTAGCATAATGAATATATGGGTGA
TATAAACCCAGTCACTATTCCAATTATATGAATTTATATGGAAGGAAAGA
TCCCGATCCTGATCTTTCAACAATTCTTTTTATACCGACTTAAGAGGATT
TTTNCATTGTTTCATCTCTCTTTTGACCTCGGATACTGTATGTTCTTAAA
CAGCCTTTTATGAAGATTCGATAATTGTGGAACAGTCAATTCAACTACAT
TTTTGCAGACAAATTCTTCTGATTTTCAGTTCTCAATTTCAGATTTAATA
ATTTCCATATTATATCTAGTACTATCGATTAGCTGGGACTGGTCTCTTAA
AATTCTAACCAGCTGTATTTTTCTTTCCATTTCATTACAGGCTGGGACGG
GAAACCAATACCCTACTGGCTTTACAAATTACACGGCTTGAATCTCTATT
ACCCATGCGAAATTTGTGGCAATCAGAAATACAGAGGTCCAAAAGCTTTC
CAAAGACATTTCTCAGAGTGGCGCCATGCGCATGGTATGCGTGTTTTGAA
CATACCTAACACAGCGCATTTCGCAAACGTCACAAAGATCGAAGACGCCC
TTTCTCTTTGGGAGAAATTGAAAGAAGAGAAAGCTAAAGAGAGGTTCCAA
CCTGACGCGGACGAAGAATTCGAAGATTCTGTGGGAAATGTCGTTAATAA
GAAAACTTTCGAAGATCTCTCTCGACAGGGATTACTTTAAGCAATTCCCT
AGGCTTACTCTTAGCATCTTTTTATGCTAGCAAAGAGTGCTACAATGTCA
GAATTTTTATTATTGGGTATATACTACATACAACTGCTCTGAAAATGCAT
ACTCGCAACTAGTAGCATAATGAATATATGGGTGATATAAACCCAGTCAC
TATTCCAATTATATGAATTTATATGGAAGGAAAGATCCCGATCCTGATCT
TTCAACAATTCTTTTTATACCGACTTAAGAGGATTTTTCTTGTTTTATGA
TTTTACTGACCCTTCTTTGGACTTTAAAATCTTACCAGCCAAGTATGGTA
GGAAAGTAACTCAAGTAACTTTCATTGGATATGCAGTTTATTTTTTAGAT
CGTATTGACTCTAAATGTGTCTAGATACCAGAAAATATTATACGAGAACT
TCTTTAACAAGAAATGTGCTGATTGATTTAGAAATATGGAAAATGAGATT
AGGTTTCATCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005380XLOC_005380Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009643-exon-sc0000097-1575043694:620339..624108TCONS_00009643-exon-sc0000097-1575043694:620339..624108Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1575043694:619679..619850TCONS_00009643-exon-sc0000097-1575043694:619679..619850Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1575043694:618690..619075TCONS_00009643-exon-sc0000097-1575043694:618690..619075Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1575043694:618038..618297TCONS_00009643-exon-sc0000097-1575043694:618038..618297Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1575043694:617596..617773TCONS_00009643-exon-sc0000097-1575043694:617596..617773Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1575043694:615695..616518TCONS_00009643-exon-sc0000097-1575043694:615695..616518Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:620339..624108TCONS_00009643-exon-sc0000097-1510915933:620339..624108Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:619679..619850TCONS_00009643-exon-sc0000097-1510915933:619679..619850Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:618690..619075TCONS_00009643-exon-sc0000097-1510915933:618690..619075Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:618038..618297TCONS_00009643-exon-sc0000097-1510915933:618038..618297Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:617596..617773TCONS_00009643-exon-sc0000097-1510915933:617596..617773Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1510915933:615695..616518TCONS_00009643-exon-sc0000097-1510915933:615695..616518Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:620339..624108TCONS_00009643-exon-sc0000097-1491911889:620339..624108Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:619679..619850TCONS_00009643-exon-sc0000097-1491911889:619679..619850Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:618690..619075TCONS_00009643-exon-sc0000097-1491911889:618690..619075Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:618038..618297TCONS_00009643-exon-sc0000097-1491911889:618038..618297Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:617596..617773TCONS_00009643-exon-sc0000097-1491911889:617596..617773Clytia hemisphaericaexon
TCONS_00009643-exon-sc0000097-1491911889:615695..616518TCONS_00009643-exon-sc0000097-1491911889:615695..616518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:615695..624108 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.0879	7.42463	5.73104	6.15902	8.89183	2.67068	8.40097	8.08033	2.59161	1.47771	2.62367	3.11011	0	0.108534	0.941518	5.64927e-07	0.427186	1.52855	0	0	2.5209e-09	0.0836083	4.08944	9.579e-08	0	0	5.08921	4.58211	3.67486	3.72425
Blast
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BLAST of TCONS_00009643 vs. Swiss-Prot (Human)
Match: SF3A3 (Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 561.222 bits (1445), Expect = 0.000e+0
Identity = 316/502 (62.95%), Postives = 389/502 (77.49%), Query Frame = 2 
Query: 3608 METVIXXXXXXXXXXXXXXGGMTQEXXXXXXXXXEQINSDHRVHFLLDRYMEVXXXXXXXXXXXXSLRQEEINSIAGPNEFAEFYGRLRTIKQYHRKYPNEVAEPMQMEFLRLKDLREKPGEEQEVLVEFSDEEGFGKYLDLHEAYNMYINLKGIEHIDYLTFLMSFDRLFEIAKEKKNHEYKKYLNKVLDYLYSFLQRTKPLLNLERELKEADEDFQSKYEHGNFMGWPKETGSALAHSGAHLDLSAFSSPEELMSLGLDRLKSALQALSMKCGGTLEERAKRLFGTKGVSLEDLXXXXXXXXXXXXXXXIDNAKRQRELAALESQVYRLVELVGEERQATRENVERKQARTXXXXXXXXXXXXXXXXXXXXXXQTLYNPKKLPLGWDGKPIPYWLYKLHGLNLYYPCEICGNQKYRGPKAFQRHFSEWRHAHGMRVLNIPNTAHFANVTKIEDALSLWXXXXXXXXXXRFQPDADEEFEDSVGNVVNKKTFEDLSRQGLL 5113
            MET++EQQRR HEE+ERL   M +E+L KK+ L++QINSDHR   + DRYMEV+  L+  Y D D LR+EE+N+I+GPNEFAEFY RL+ IK++HRK+PNE+  PM +EF  L   RE P EE + LVEF+DEEG+G+YLDLH+ Y  YINLK  E +DY+T+L  FD+LF+I KE+KN EYK+YL  +L+YL  +  R KPL +      +   +F+ K+E+G F GWPKET SAL H+GAHLDLSAFSS EEL SLGLDRLKSAL AL +KCGGTLEERA+RLF TKG SLE L ++   K  + K    D  +R +++A LE+Q+Y  VE++GE+R  T ENV+RKQART  E E++EEE   + ES+DEE + +YNPK LPLGWDGKPIPYWLYKLHGLN+ Y CEICGN  YRGPKAFQRHF+EWRHAHGMR L IPNTAHFANVT+IEDA+SLW KLK +KA ER+QPD +EE+EDS GNVVNKKT+EDL RQGLL
Sbjct:    1 METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRD-TERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501
The following BLAST results are available for this feature:
BLAST of TCONS_00009643 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3A30.000e+062.95Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF... [more]
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