TCONS_00008513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008513
Unique NameTCONS_00008513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008513 ID=TCONS_00008513|Name=TCONS_00008513|organism=Clytia hemisphaerica|type=transcript|length=497bp
NTTGATATTAAAATCACCCATAAGCACAAGGCGCTTATTTTCCTTGTTAG
CTTTTTGTAAGAAGGGAATGAAGAAGTCGTTTGTAAAAGTTTCGATTTTC
ATCGTTGGATGTTTATAGATACATCCAACAATAACATTTTCTTGCTTCTC
AAACAAGAGTTCGCAAAAAGTAGATTCAAGATCCTTTTCTGAGTTGAGAA
GATTAGAAAGGTCTTTTCTAGGTTTGGATTTTAGCTTGTCAGAAATGAAG
AGGGCAGTGCCGCCGGCACTCGCCTTTGTATTAGTAAAGAATGATTTATA
GCCATCTATCTCAAGCCTGTGTGGGATAGACGAATCTGTAAGCCTAGATT
CTGAAATTCCTAAGACTTTGAATTCGTGATTTAATGTTTCTAAGAGGTTA
TTATACTCATCAAAATGAAGTGAAGAAAAGAGAGGTGTGAAGATGTATTA
GAAAAAGCAAAGTTAAAGTCGTCACAATCTAGATACCTACAATCAAT
Run BLAST on NCBI

transcript from alignment at sc0000085:443755..444251

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008513 ID=TCONS_00008513|Name=TCONS_00008513|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0000085:443755..444251 (Clytia hemisphaerica)
ATTGATTGTAGGTATCTAGATTGTGACGACTTTAACTTTGCTTTTTCTAA
TACATCTTCACACCTCTCTTTTCTTCACTTCATTTTGATGAGTATAATAA
CCTCTTAGAAACATTAAATCACGAATTCAAAGTCTTAGGAATTTCAGAAT
CTAGGCTTACAGATTCGTCTATCCCACACAGGCTTGAGATAGATGGCTAT
AAATCATTCTTTACTAATACAAAGGCGAGTGCCGGCGGCACTGCCCTCTT
CATTTCTGACAAGCTAAAATCCAAACCTAGAAAAGACCTTTCTAATCTTC
TCAACTCAGAAAAGGATCTTGAATCTACTTTTTGCGAACTCTTGTTTGAG
AAGCAAGAAAATGTTATTGTTGGATGTATCTATAAACATCCAACGATGAA
AATCGAAACTTTTACAAACGACTTCTTCATTCCCTTCTTACAAAAAGCTA
ACAAGGAAAATAAGCGCCTTGTGCTTATGGGTGATTTTAATATCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004762XLOC_004762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008513-exon-sc0000085-1491911889:443755..444251TCONS_00008513-exon-sc0000085-1491911889:443755..444251Clytia hemisphaericaexon
TCONS_00008513-exon-sc0000085-1510915933:443755..444251TCONS_00008513-exon-sc0000085-1510915933:443755..444251Clytia hemisphaericaexon
TCONS_00008513-exon-sc0000085-1575043694:443755..444251TCONS_00008513-exon-sc0000085-1575043694:443755..444251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085supercontigsc0000085:443755..444251 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.862306	0.120126	0.836869	2.18332	7.47558	5.64476	2.53401	4.29982	1.03807	2.44305	0.124805	0.902458	0.901203	1.53149	0.629545	0.825731	0.277427	0.379139	0.65475	0.685149	0.833727	0.348568	0	0.770464	6.613	6.13802	2.19587	0.901344	0.820365	0.696519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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