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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064161 ID=TCONS_00064161|Name=TCONS_00064161|organism=Clytia hemisphaerica|type=transcript|length=2694bpRun BLAST on NCBI protein sequence of TCONS_00064161-protein >TCONS_00064161-protein ID=TCONS_00064161-protein|Name=TCONS_00064161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp MSVESNGSAVQMSEVTVNKGSLDDAAVLSIESSQSPERVESPQEIHKLRERun BLAST on NCBI transcript from alignment at scaffold_41:198774..224134+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064161 ID=TCONS_00064161|Name=TCONS_00064161|organism=Clytia hemisphaerica|type=transcript|length=25361bp|location=Sequence derived from alignment at scaffold_41:198774..224134+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:198774..224134+ >TCONS_00064161 ID=TCONS_00064161|Name=TCONS_00064161|organism=Clytia hemisphaerica|type=CDS|length=36936bp|location=Sequence derived from alignment at scaffold_41:198774..224134+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064161 vs. Swiss-Prot (Human)
Match: ABCG2 (ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3) HSP 1 Score: 256.144 bits (653), Expect = 2.885e-73 Identity = 183/548 (33.39%), Postives = 291/548 (53.10%), Query Frame = 1
Query: 556 KPILKNVTGVAEPGSLLAIMGASGAGKTTXXXXXXXXXXXXMRVGGKIQVNGKSMKSKIKNISAYCQQEDLFIGTLTVKEHLTFQALLRMDGT--NEEKKARVHDVMSQLGLLKCKDTIIGVPGRIRGISGGENKRLSFASEIITNPNLLFVDEPTSGLDSFMAESVITALQNIARKEGKTVLATIHQPSSETFALFDRLLLMSEGRTAFLGSTTDAISFFSGVGYPIPPNYNPADHYIHTL-----AIIPSREAECK---------------EKAKAIC--DAYDTQYGIGKQQMENGD-SSKVETHHEIPQAPKFKVGIVGQFRAVLWRSWMAALREPFVTKLRLIQSVVIALIAGLVYLNQGNEGQDSVRNLNGALFFVTTTMTFNSITGSLYVFPAELPVFLKEHKQGMYRTMVYFICKTLAE-LPWYTLGGFIFSVIVYWMAGLRGEAANFFIFCGIVQLITQCALSFGYLVSAISPSVQIATSAXXXXXXXXXXXXXXXIKDESIPDYFIPLKYISWFKYSFEALQINQWDGLTIPGCVNST 2121
K IL N+ G+ +PG L AI+G +G GK++LL+VL+ + + + G + +NG + K S Y Q+D+ +GTLTV+E+L F A LR+ T N EK R++ V+ +LGL K D+ +G IRG+SGGE KR S E+IT+P++LF+DEPT+GLDS A +V+ L+ ++ K+G+T++ +IHQP F LFD L L++ GR F G +A+ +F GY NPAD ++ + A+ +RE + K EK I ++ + Q+ G+ K+ EI F Q R V RS+ L P + ++I +VV+ L+ G +Y N+ ++N G LFF+TT F+S++ ++ +F E +F+ E+ G YR YF+ K L++ LP L IF+ IVY+M GL+ +A FF+ + ++ A S ++A V +AT + ++F G + +I + L+Y S +Y F ALQ N++ G +N+T
Sbjct: 61 KEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPS-GLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNHEKNERINRVIQELGLDKVADSKVGTQ-FIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMS-KQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYNNPADFFLDIINGDSTAVALNREEDFKATEIIEPSKQDKPLIEKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSF----CHQLRWVSKRSFKNLLGNPQASIAQIIVTVVLGLVIGAIYFGLKND-STGIQNRAGVLFFLTTNQCFSSVS-AVELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADAFFVMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFTALQHNEFLGQNFCPGLNAT 598 The following BLAST results are available for this feature:
BLAST of TCONS_00064161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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