TCONS_00064161-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064161-protein
Unique Name	TCONS_00064161-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	683

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064161-protein ID=TCONS_00064161-protein|Name=TCONS_00064161-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp
MSVESNGSAVQMSEVTVNKGSLDDAAVLSIESSQSPERVESPQEIHKLRE
DTDDGEVVLSNPALSSNGVVNKVCLTWDNLCVDAELPPPSCFTKLKARSD
PSILETYKKTKPILKNVTGVAEPGSLLAIMGASGAGKTTLLNVLSNQNVN
NMRVGGKIQVNGKSMKSKIKNISAYCQQEDLFIGTLTVKEHLTFQALLRM
DGTNEEKKARVHDVMSQLGLLKCKDTIIGVPGRIRGISGGENKRLSFASE
IITNPNLLFVDEPTSGLDSFMAESVITALQNIARKEGKTVLATIHQPSSE
TFALFDRLLLMSEGRTAFLGSTTDAISFFSGVGYPIPPNYNPADHYIHTL
AIIPSREAECKEKAKAICDAYDTQYGIGKQQMENGDSSKVETHHEIPQAP
KFKVGIVGQFRAVLWRSWMAALREPFVTKLRLIQSVVIALIAGLVYLNQG
NEGQDSVRNLNGALFFVTTTMTFNSITGSLYVFPAELPVFLKEHKQGMYR
TMVYFICKTLAELPWYTLGGFIFSVIVYWMAGLRGEAANFFIFCGIVQLI
TQCALSFGYLVSAISPSVQIATSAGPPLMMPFLLFGGFFIKDESIPDYFI
PLKYISWFKYSFEALQINQWDGLTIPGCVNSTIACFPDGEAVLKSSGYSA
DNMGLNIGVLFAIVIGFRFIALLFVLLRARRAR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040230	XLOC_040230	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064161	TCONS_00064161	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR013525	ABC_2_trans
IPR003439	ABC_transporter-like
IPR027417	P-loop_NTPase

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016887	ATPase activity
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 123..315 e-value: 1.6E-7 score: 41.0
None	No IPR available	GENE3D	3.40.50.300		coord: 72..401 e-value: 1.2E-46 score: 159.0
None	No IPR available	CDD	cd03213	ABCG_EPDR	coord: 108..320 e-value: 3.24659E-72 score: 233.212
IPR013525	ABC-2 type transporter	PFAM	PF01061	ABC2_membrane	coord: 409..619 e-value: 2.6E-48 score: 164.1
IPR003439	ABC transporter-like	PFAM	PF00005	ABC_tran	coord: 114..265 e-value: 1.1E-24 score: 87.3
IPR003439	ABC transporter-like	PROSITE	PS50893	ABC_TRANSPORTER_2	coord: 98..338 score: 16.86
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 109..330

Blast

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BLAST of TCONS_00064161-protein vs. Swiss-Prot (Human)
Match: ABCG4 (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 1.894e-90
Identity = 182/586 (31.06%), Postives = 307/586 (52.39%), Query Frame = 0

Query:  111 KPILKNVTGVAEPGSLLAIMGASGAGKTTLLNVLSNQNVNNMRVGGKIQVNGKSMKSK-IKNISAYCQQEDLFIGTLTVKEHLTFQALLRMDGTNEEKKARVHDVMSQLGLLKCKDTIIGVPGRIRGISGGENKRLSFASEIITNPNLLFVDEPTSGLDSFMAESVITALQNIARKEGKTVLATIHQPSSETFALFDRLLLMSEGRTAFLGSTTDAISFFSGVGYPIPPNYNPADHYIHTLAIIPSRE------AECKEKAKAICDAYDTQYGIGKQQMENGDSSKVETHHEIPQAPKFKVGIVGQFRAVLWRSWMAALREPFVTKLRLIQSVVIALIAGLVYLNQGNEGQDSVRNLNGALFFVTTTMTFNSITGSLYVFPAELPVFLKEHKQGMYRTMVYFICKTLAELPWYTLGGFIFSVIVYWMAGLRGEAANFFIFCGIVQLITQCALSFGYLVSAISPSVQIATSAGPPLMMPFLLFGGFFIKDESIPDYFIPLKYISWFKYSFEALQINQWDGLTIPGCVNSTIAC------FPDGEAVLKSSGYSADNMGLNIGVLFAIVIGFRFIALLFVLLRARRAR 683
            K +LK ++G      L+ IMG SGAGK+T +N+L+    + M+  G+I VNG+  + +  + +S Y  Q+D+ +  LTV E +   A L++    E KK  V ++++ LGL+ C  T      R   +SGG+ KRL+ A E++ NP ++F DEPTSGLDS     V++ ++++A+  G+T++ TIHQPS++ F +FD+L ++S+G+  F G  T+ I +  G+G   P  +NPAD  I     + S E         +     +C   + +    K ++             I ++  F    + QF  +  R++++ LR+  +T LR +  VVI ++ GL+YL+ G++    V N  G LFF    + F ++  ++  FP E+ VF++EH    Y    Y++ KT+A++P+  +   ++  IVYWM G   E + F +F  +       A S G L+ A S S+Q+AT  GP   +P LLF GFF+  ++IP Y     Y+S+ +Y FE +       LTI G     + C      F + +++L++       + ++  VL    +  R +A L +  R +  R
Sbjct:   82 KTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMK--GQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHT------RTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQG-GRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIE----VASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPCPPCPPEVDPI-ESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDA-SKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVI------LTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER 646

The following BLAST results are available for this feature:

BLAST of TCONS_00064161-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064161-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ABCG4	1.894e-90	31.06	ATP-binding cassette sub-family G member 4 OS=Homo...	[more]

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TCONS_00064161-protein (polypeptide) - C. hemisphaerica