TCONS_00059731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059731
Unique NameTCONS_00059731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059731 ID=TCONS_00059731|Name=TCONS_00059731|organism=Clytia hemisphaerica|type=transcript|length=1507bp
TCACCTTCTTTGGTTGGTAATACTGCCTTTTCTTCGGTCTTTGATTCTTT
CAATTGACCCTTGTCGAAATCTTTAACAGCTGAAACATCTGGAAGGACCT
CTGGGCGAGTTTCCTCTTTGAGAGTGGCCGCAGTTGGTAAAGTATTCTTT
TCTTCTGTATCAACGGATTTAAGTTTTGATTTATCGAAAGCTTTAACCTC
AGATCGTGATTCGACTGCTTCTTCTTTAATGACTTCTGCGGTGGGTAAAA
CGGttttttcttctgtttctaCATGCTTTAATTTGGAGGCATCAAATCCT
GCAACAGCTGACACGTCTGGTAACACCTCTGGACGAGTTTCCTCCTTTAA
TGTTGCAGCAGTTGGCAAAGTGTTTTTTTCCTCTGTTTCAACAGATttaa
gttttgatttatcaaacgCTTTAACCTCAGATCTTGATTCAACCGCTTCC
TCTTTAATGACATCAGCGGTGGGGAGAACAGTTTTTTCCTCTGTTTCTAC
ATGCTTTAATTTAGAGGCATCAAATCCAGCAACGGCTGAAACATCAGGCA
AGCTTTCTGGTCGCGTTTCTTCTTTGAGGGTGGCAGCAGTTGGCAAAGTG
TTCTTTTCCTCTGTTTCTACAGATTTAAGTTTAGATTTATCAAAAGACTT
AACTTCTGACCGAGATTCAACCGATTCTTCTTTAATCACTTCTGCGGTGG
GTAAAACAGTTTTTTCCTCTGTTTCTACATGTTTTAATTTGGATGGATCA
AATCCAGCAACGCCCGACACGTCTGGTAACACCTCTGGTCGAGTTTCCTC
CTTTAGAGTTGCAGCAGTTGGTAAAGTGTTCTTTTCCTCTGTTTCAACcg
atttgagttttgatttatCGAACGCTTTAACCTCAGATCTTGATTCAACA
GATTCCTCCTTAATAACATCAGCAGTGGGGAGAACAGATTTTTCCTCTGT
TTCTACATGCTTTAATTTGGAGGCATCAAATTCAGCAACACCTGAAACAT
CTGGCAAACTTTCTGGTCGAGTTTCTTCTTTCAAGGTTGCAGCAGTTGGG
AGAGTATTCTTCTCAACAGTTTCAACTGATTTCAGGTTAGATTTGTCAAA
GACTTTGACCTCTGCACGTGATTCAACTGCTTCTTCTTGAATAACATCTG
AAGTGGGTAAAACGGTTTTTTCTTCTGTTTCAACATGTTTCAATTTAGAA
GCATCAAATTCTGCAACTCCAGAAACATCAGGCAAGACCTCTGGTCGAGT
TTCTTCTTTTAAGGTTGCAGCAGTTGGGAGAGTGTTTTTCTCAACGGTTT
CAACTGATTTCAGGTTAGATTTGTCAAAGACTTTGACTTCTGACCTGGAT
TCAACTGCTTCTTCTTGAATCACTAAAAGAGAATGAAATACACATTGAAA
ATACTTCAAACTTTTATTATTGGTTATATAACATAGCTTCAACCCCTATA
GGATAGGAGTTTCAAGGGAGGGTTTCAGGATATTTAAAATTTGACACCAG
AGGGTTT
Run BLAST on NCBI

protein sequence of TCONS_00059731-protein

>TCONS_00059731-protein ID=TCONS_00059731-protein|Name=TCONS_00059731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MTSAVGKTVFSSVSTCFNLEASNPATADTSGNTSGRVSSFNVAAVGKVFF
SSVSTDLSFDLSNALTSDLDSTASSLMTSAVGRTVFSSVSTCFNLEASNP
ATAETSGKLSGRVSSLRVAAVGKVFFSSVSTDLSLDLSKDLTSDRDSTDS
SLITSAVGKTVFSSVSTCFNLDGSNPATPDTSGNTSGRVSSFRVAAVGKV
FFSSVSTDLSFDLSNALTSDLDSTDSSLITSAVGRTDFSSVSTCFNLEAS
NSATPETSGKLSGRVSSFKVAAVGRVFFSTVSTDFRLDLSKTLTSARDST
ASS
Run BLAST on NCBI

transcript from alignment at scaffold_330:311400..313134-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059731 ID=TCONS_00059731|Name=TCONS_00059731|organism=Clytia hemisphaerica|type=transcript|length=1735bp|location=Sequence derived from alignment at scaffold_330:311400..313134- (Clytia hemisphaerica)
TCACCTTCTTTGGTTGGTAATACTGCCTTTTCTTCGGTCTTTGATTCTTT
CAATTGACCCTTGTCGAAATCTTTAACAGCTGAAACATCTGGAAGGACCT
CTGGGCGAGTTTCCTCTTTGAGAGTGGCCGCAGTTGGTAAAGTATTCTTT
TCTTCTGTATCAACGGATTTAAGTTTTGATTTATCGAAAGCTTTAACCTC
AGATCGTGATTCGACTGCTTCTTCTTTAATGACTTCTGCGGTGGGTAAAA
CGGTTTTTTCTTCTGTTTCTACATGTTTTAATTTAGCAGCATCAAATCCT
GCAACTCCAGAAACATCTGGCAGCACCTCTGGACGAGTTTCTTCTTTTAA
GGTTGCAGCAGTTGGTAAAGTGTTCTTTTCCTCTGTATCAACAGATTTAA
GTTTAGATTTATCAAAAGATTTGACTTCTGATCGAGATTCGACCGACTCT
TCCTTTATTACATCTGCGGTGGGTAAAACAGTTTTTTCCTCTGTTTCTAC
ATGCTTTAATTTGGAGGCATCAAATCCTGCAACAGCTGACACGTCTGGTA
ACACCTCTGGACGAGTTTCCTCCTTTAATGTTGCAGCAGTTGGCAAAGTG
TTTTTTTCCTCTGTTTCAACAGATTTAAGTTTTGATTTATCAAACGCTTT
AACCTCAGATCTTGATTCAACCGCTTCCTCTTTAATGACATCAGCGGTGG
GGAGAACAGTTTTTTCCTCTGTTTCTACATGCTTTAATTTAGAGGCATCA
AATCCAGCAACGGCTGAAACATCAGGCAAGCTTTCTGGTCGCGTTTCTTC
TTTGAGGGTGGCAGCAGTTGGCAAAGTGTTCTTTTCCTCTGTTTCTACAG
ATTTAAGTTTAGATTTATCAAAAGACTTAACTTCTGACCGAGATTCAACC
GATTCTTCTTTAATCACTTCTGCGGTGGGTAAAACAGTTTTTTCCTCTGT
TTCTACATGTTTTAATTTGGATGGATCAAATCCAGCAACGCCCGACACGT
CTGGTAACACCTCTGGTCGAGTTTCCTCCTTTAGAGTTGCAGCAGTTGGT
AAAGTGTTCTTTTCCTCTGTTTCAACCGATTTGAGTTTTGATTTATCGAA
CGCTTTAACCTCAGATCTTGATTCAACAGATTCCTCCTTAATAACATCAG
CAGTGGGGAGAACAGATTTTTCCTCTGTTTCTACATGCTTTAATTTGGAG
GCATCAAATTCAGCAACACCTGAAACATCTGGCAAACTTTCTGGTCGAGT
TTCTTCTTTCAAGGTTGCAGCAGTTGGGAGAGTATTCTTCTCAACAGTTT
CAACTGATTTCAGGTTAGATTTGTCAAAGACTTTGACCTCTGCACGTGAT
TCAACTGCTTCTTCTTGAATAACATCTGAAGTGGGTAAAACGGTTTTTTC
TTCTGTTTCAACATGTTTCAATTTAGAAGCATCAAATTCTGCAACTCCAG
AAACATCAGGCAAGACCTCTGGTCGAGTTTCTTCTTTTAAGGTTGCAGCA
GTTGGGAGAGTGTTTTTCTCAACGGTTTCAACTGATTTCAGGTTAGATTT
GTCAAAGACTTTGACTTCTGACCTGGATTCAACTGCTTCTTCTTGAATCA
CTAAAAGAGAATGAAATACACATTGAAAATACTTCAAACTTTTATTATTG
GTTATATAACATAGCTTCAACCCCTATAGGATAGGAGTTTCAAGGGAGGG
TTTCAGGATATTTAAAATTTGACACCAGAGGGTTT

Coding sequence (CDS) from alignment at scaffold_330:311400..313134-

>TCONS_00059731 ID=TCONS_00059731|Name=TCONS_00059731|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_330:311400..313134- (Clytia hemisphaerica)
GCTTTAATTTGGAGGCATCAAATCCTGCAACAGCTGACACGTCTGGTAAC
ACCTCTGGACGAGTTTCCTCCTTTAATGTTGCAGCAGTTGGCAAAGTGTT
TTTTTCCTCTGTTTCAACAGATTTAAGTTTTGATTTATCAAACGCTTTAA
CCTCAGATCTTGATTCAACCGCTTCCTCTTTAATGACATCAGCGGTGGGG
AGAACAGTTTTTTCCTCTGTTTCTACATGCTTTAATTTAGAGGCATCAAA
TCCAGCAACGGCTGAAACATCAGGCAAGCTTTCTGGTCGCGTTTCTTCTT
TGAGGGTGGCAGCAGTTGGCAAAGTGTTCTTTTCCTCTGTTTCTACAGAT
TTAAGTTTAGATTTATCAAAAGACTTAACTTCTGACCGAGATTCAACCGA
TTCTTCTTTAATCACTTCTGCGGTGGGTAAAACAGTTTTTTCCTCTGTTT
CTACATGTTTTAATTTGGATGGATCAAATCCAGCAACGCCCGACACGTCT
GGTAACACCTCTGGTCGAGTTTCCTCCTTTAGAGTTGCAGCAGTTGGTAA
AGTGTTCTTTTCCTCTGTTTCAACCGATTTGAGTTTTGATTTATCGAACG
CTTTAACCTCAGATCTTGATTCAACAGATTCCTCCTTAATAACATCAGCA
GTGGGGAGAACAGATTTTTCCTCTGTTTCTACATGCTTTAATTTGGAGGC
ATCAAATTCAGCAACACCTGAAACATCTGGCAAACTTTCTGGTCGAGTTT
CTTCTTTCAAGGTTGCAGCAGTTGGGAGAGTATTCTTCTCAACAGTTTCA
ACTGATTTCAGGTTAGATTTGTCAAAGACTTTGACCTCTGCACGTGATTC
AACTGCTTCTTCTTGAATGACTTCTGCGGTGGGTAAAACGGTTTTTTCTT
CTGTTTCTACATGCTTTAATTTGGAGGCATCAAATCCTGCAACAGCTGAC
ACGTCTGGTAACACCTCTGGACGAGTTTCCTCCTTTAATGTTGCAGCAGT
TGGCAAAGTGTTTTTTTCCTCTGTTTCAACAGATTTAAGTTTTGATTTAT
CAAACGCTTTAACCTCAGATCTTGATTCAACCGCTTCCTCTTTAATGACA
TCAGCGGTGGGGAGAACAGTTTTTTCCTCTGTTTCTACATGCTTTAATTT
AGAGGCATCAAATCCAGCAACGGCTGAAACATCAGGCAAGCTTTCTGGTC
GCGTTTCTTCTTTGAGGGTGGCAGCAGTTGGCAAAGTGTTCTTTTCCTCT
GTTTCTACAGATTTAAGTTTAGATTTATCAAAAGACTTAACTTCTGACCG
AGATTCAACCGATTCTTCTTTAATCACTTCTGCGGTGGGTAAAACAGTTT
TTTCCTCTGTTTCTACATGTTTTAATTTGGATGGATCAAATCCAGCAACG
CCCGACACGTCTGGTAACACCTCTGGTCGAGTTTCCTCCTTTAGAGTTGC
AGCAGTTGGTAAAGTGTTCTTTTCCTCTGTTTCAACCGATTTGAGTTTTG
ATTTATCGAACGCTTTAACCTCAGATCTTGATTCAACAGATTCCTCCTTA
ATAACATCAGCAGTGGGGAGAACAGATTTTTCCTCTGTTTCTACATGCTT
TAATTTGGAGGCATCAAATTCAGCAACACCTGAAACATCTGGCAAACTTT
CTGGTCGAGTTTCTTCTTTCAAGGTTGCAGCAGTTGGGAGAGTATTCTTC
TCAACAGTTTCAACTGATTTCAGGTTAGATTTGTCAAAGACTTTGACCTC
TGCACGTGATTCAACTGCTTCTTCTTGAATGACTTCTGCGGTGGGTAAAA
CGGTTTTTTCTTCTGTTTCTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037573XLOC_037573Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059731-proteinTCONS_00059731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059731-exon-scaffold_330-1575043694:312861..313134TCONS_00059731-exon-scaffold_330-1575043694:312861..313134Clytia hemisphaericaexon
TCONS_00059731-exon-scaffold_330-1575043694:311400..312632TCONS_00059731-exon-scaffold_330-1575043694:311400..312632Clytia hemisphaericaexon
TCONS_00059731-exon-scaffold_330-1510915933:312861..313134TCONS_00059731-exon-scaffold_330-1510915933:312861..313134Clytia hemisphaericaexon
TCONS_00059731-exon-scaffold_330-1510915933:311400..312632TCONS_00059731-exon-scaffold_330-1510915933:311400..312632Clytia hemisphaericaexon
TCONS_00059731-exon-scaffold_330-1491911889:312861..313134TCONS_00059731-exon-scaffold_330-1491911889:312861..313134Clytia hemisphaericaexon
TCONS_00059731-exon-scaffold_330-1491911889:311400..312632TCONS_00059731-exon-scaffold_330-1491911889:311400..312632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:311400..313134 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.3476	53.4723	12.988	11.4554	37.4	29.1442	84.7824	94.6487	67.1834	87.9187	57.2294	43.6745	46.8704	27.428	68.8352	82.4599	121.214	131.431	53.772	90.499	49.8503	45.0689	67.8724	66.6235	51.2203	58.7403	84.0158	61.7633	160.357	169.708
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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