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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005286 ID=TCONS_00005286|Name=TCONS_00005286|organism=Clytia hemisphaerica|type=transcript|length=1010bp
GCAAGACCGCCAGGTCCATACGAACCGTTCGGTTTGTATGTGTGCTCAGA
ATAGTAATGTTCAAAGattcaacttttttcttttactttttataacagaa
taaaatacaaaaaagatgTATTCCAGAAAGGTTGTATTCTTGCTTTTGTT
GGTCAATTTTGTTTACTCCTTTGAAGAGAGTGAAGAAGAAAGTGGTTCAG
GCATTGATCCTGGAgacaaaatattgaaagaatTCGAAGCATTATTATCA
AATTTGAAAGACACAGATCTATTAGTGATGGTGGATGTCACTCAACCAGC
TGAAAATTTCACTGAAGCATTAAAGAATATATCGAAAGACGCAGTGCCTT
GTATGAAGAAATTCAGTGAAGAAAAGAATTCTGTTTCCGTTATGACGTTC
TCTTCTACTCCGCAATTGATCATCGACTTTGATTCTCCATGTCTAAAAGA
TATTGCTTGTATGGAAGACAAAGGAAAAACTATAAAGACAAAAAATGAAG
CACGTAATTTGAAGAAGGCTTTGAGGAAAGCTAAACAACATTTATCGCAt
cgtaaaaagatttttaaagataaaaaacaattacTGCTACTCATCACGTT
CGGAGCTGATGAACCAGTTTCAAGCAAATCCACAAAAATCACCAAGACTA
ACGTTTTCTCACGTATTGGTAAAAAATTCAGCCGAGATGACGTCACAGTT
GCCGTCGTCGGAATTGGGAAGGAGGCGATCAAACAGAAAAGTCATTTAAG
TGATATTCTCCACCCtgaaaagaaaaattcgaaCGAGGAAGATAAATATT
TAATGTTTTCTGAAGAAGACTATATAACGGAGATTCTAATGTTCTCAGTT
AATTTCACTTGCGTTGATAAGTTCAATGATATTTTTGGTATGGATTTCTG
AAGATGTCGATTTGGAGAAGAATTGCTCATTTTGTAactaattattttat
tatttcatattttaaagCGGCAAAAATAGTATAAAATAGACGAAAGAAAT
TTCATAGTTT Run BLAST on NCBI protein sequence of TCONS_00005286-protein >TCONS_00005286-protein ID=TCONS_00005286-protein|Name=TCONS_00005286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
MYSRKVVFLLLLVNFVYSFEESEEESGSGIDPGDKILKEFEALLSNLKDT
DLLVMVDVTQPAENFTEALKNISKDAVPCMKKFSEEKNSVSVMTFSSTPQ
LIIDFDSPCLKDIACMEDKGKTIKTKNEARNLKKALRKAKQHLSHRKKIF
KDKKQLLLLITFGADEPVSSKSTKITKTNVFSRIGKKFSRDDVTVAVVGI
GKEAIKQKSHLSDILHPEKKNSNEEDKYLMFSEEDYITEILMFSVNFTCV
DKFNDIFGMDF Run BLAST on NCBI transcript from alignment at sc0000052:288997..293624+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005286 ID=TCONS_00005286|Name=TCONS_00005286|organism=Clytia hemisphaerica|type=transcript|length=4628bp|location=Sequence derived from alignment at sc0000052:288997..293624+ (Clytia hemisphaerica)
GCAAGACCGCCAGGTCCATACGAACCGTTCGGTTTGTATGTGTGCTCAGA
ATAGTAATGTTCAAAGattcaacttttttcttttactttttataacagaa
taaaatacaaaaaagatgTATTCCAGAAAGGTTGTATTCTTGCTTTTGTT
GGTCAATTTTGTTTACTCCTTTGAAGAGAGTGAAGAAGAAAGTGGTTCAG
GCAGTAAGTATTGTTGCATAACTCCTTCAGTACTTTGCGGGGAAACAaga
atttattgtttttttttttaagccaAGGTACGTCAACTTCAAAGGCAAAA
TAGATGGTGGGGTTCTTTGGAAAGACCTATCTTCTTAGCgtacttatttt
ttgaattaggCCATCAATCAAGATTACCGTCAGCCGAAAAAAGGGTAAAT
AAATGAAGGAAATTTTGTTGGGTAGTAATAGCTATACTTTTTAATATCGA
GTTCTATGCTTTATCATTGAAATATGATTTCTGTGAGTCATCGGCGATTC
AACTAAATTTTTGAAGTAATGAGGGGGTCTATGTaacaaatcctgcatta
ctaaaaatattATCGACAGTAGCACATCGATAGTAGAACCAtagagtttc
aagcccgaagggctagaggcaaGACTTCCCTTTTCAGGCAAGATAAATTG
AAACTactcatttcccatccaaaacacgaatagaacgcgccgtaatcatg
acgacagattgtatctagcggttcctttgttttggaggactacatttttt
gaaatctaacgatagattttagtttcaatctggcgtatattgtgtaaaaa
ctacgcgcgggcgttttaagtggtttcattttccctccaggagtctcgcc
tctactcttcgggcttgaaactcaatgtttagaacgtcgaattagacaGA
GTCACCTGTATTCCAATTTTTTGTAGTTGATCCTGGAgacaaaatattga
aagaatTCGAAGCATTATTATCAAATTTGAAAGACACAGATCTATTAGTG
ATGGTGGATGTCACTCAACCAGCTGAAAATTTCACTGAAGCATTAAAGAA
TATATCGAAAGACGCAGTGCCTTGTATGAAGAAATTCAGTGAAGAAAAGA
ATTCTGTTTCCGTTATGACGTTCTCTTCTACTCCGCAATTGATCATCGAC
TTTGATTCTCCATGTCTAAAAGATATTGCTTGTATGGAAGACAAAGGAAA
AACTATAAAGTAAGAATACTCATGTCAGTATTGTGGGAAACTTAAGATTT
TTAAGGAGCTTTTTTCAAAGCTATGATTTGTTgacttcaaataatttttt
tggcttTGGCTAAAGTGAAATAGATTATTTTGGTTTCAAGCTCTTTTTTG
AATAAGATCCTCAATCCAAATTAAAAGACAACCTTCAGCtcaaaaataaa
ggaaattAAACTGGGCAGAGTACTGAATAAGTTAAGTAAACcgtcataca
cgtttttttataagataacgcaaaatttttgaagtcttcggatgttctta
aatttttgagctttaagtctaaaaatgttcttaacatgttcttattttca
ccatttttttagcatttttgtccattttccttaagaaattggatgtttta
gagtctgcaagccctaaaatgttcttaacttgttcttaacattttgagca
TTGAAGccttatatgttcttatatagtttgttcttataaaaaaatgtgta
tcatGTATTTAAAAAACGATCATTTCGATGACTTACCTTCCCGCAATACA
TTAATAGGATGAACAATTTCCAGAGGGTTGCTGCTGTTTGTTTACGTGTC
GTACTTAAATGTTactaaaattatgcaaaaattatgCAAAAGAGCCTCTT
ATGTATGATGCGTGACATTGAGTCAATTTCTTGGCTGAAATGATACTATG
GAACAATAAAGTATTTGGTTTACATTTTGGaattaatacaccttttcgac
cgtagccgccaattgcagcgtggacatttttttgtccgttttaccacgcC
CTAAAATCGTCCTAGTCtctttttcgcacctatagacaatagaaaaatgt
gtaaaaaaggattggatcgggTTTAATGTGATAAAACGGACAAAACAATG
TCGgcgcggcaattggtggctacggtcaaAAAGATGTATTAAGTAATTAT
CAATTTTGGGAGCTTCCAAGACTGAAAACTCAAAGATACTAAAACTTGCT
TATCAGTGCCCCCTGCCTCGGTGAATTTGGAGTTCAGACAGTCAaggaca
ccttcaaattagcctatcataggctgattagcctatcataggctatttag
ccgaaaatcgataaaaacctcaatttctgacgaaatataaatagtcgcgt
ctatTTTTCACCATTACTTCATTGTCTAAATATTAAATATATATGTAATA
AATATATTGTCTAATattcaattttggaaacagaaatatgaataaattta
ctatccatcggctaactaaccgattataggctaattttctgataataAAG
TGCCGTGTACAAAAACACATGTTTGTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAAAGCCCGATTTCCTTACCCTGCGCA
TGCGCACGCATGCGCAGTaccaaaaagtggaatatttcctaaaccaaaat
tgacccaaagtcaaaatttgtcatgaaCATTACTCTGACCATGAGAAACC
ATGTATTCCTTAGagaagacgcgactatttatatttcgtcagaaatcaag
gctgataggctaatttgaaggtgtcctTGACTGTCAGACGGGAGTTCAGA
GCTCAGGATTCACGGAAATTTAATAAAAACCGGGGGGGGGATTCACAACT
GAGCAACTgcacgttgtttttttataagaacatccaaaattgttgaagcc
ttcggatgtttctacctttttgagttttaagcctaaaaatgttcttattt
tgtttattttgtgaatacttttgtccattttcccaagaaatcgGGGTTTT
TTGAGTCCAcgaagccttagaatgttcttaacttgttcttaacattttgg
ccagtgaatgtttttatatagtttgttcttaagaaaaaaaacgtatatcc
tgtaaatttttaattctttttcagGACAAAAAATGAAGCACGTAATTTGA
AGAAGGCTTTGAGGAAAGCTAAACAACATTTATCGCAtcgtaaaaagatt
tttaaagataaaaaacaattacTGCTACTCATCACGTTCGGAGCTGATGA
ACCAGTTTCAAGCAAATCCACAAAAATCACCAAGACTAACGTTTTCTCAC
GTATTGGTAAAAAATTCAGCCGAGATGACGTCACAGTTGCCGTCGTCGGA
ATTGGGAAGGAGGCGATCAAACAGAAAAGTCATTTAAGTGATATTCTCCA
CCCtgaaaagaaaaattcgaaCGAGGAAGATAAATATTTAATGTTTTCTG
AAGAAGACTATATAACGGAGATTCTAATGTTCTCAGTTAATTTCAGTAAG
TATGCATACTTCTTTCGaccattaaaggttttgtttttagataagagtca
tatcgtttgcttacttgtcaattttaattcgaaagctttttcacattgga
ttgattGGATTCattgagcaagattggtcagaaaaaggaaaattttgctt
atatcagcacaatataacaataggtaaaCACTATCCTGATATGAagtatg
tgtctgatatgaaacggaaacacttatgtaaaaagaaaacctttaaaccC
TTTCCGTGTCAAAATTGAATTTATGCTGTTCCACTTTCTTTCAACTTTGT
CAAGCGtttttcttaaaggttttatacaaaaaaaaacaacatttaaaCCA
ATGGTTTTAAAAATCAACAAGTTGTAAATCTTcgtttttatcttttgaaa
aagatttttaccaATTTCAAGCTAAATTTCAATGcttgattttactttcg
ttttgaaaaACCAAAATGAAAAGTAGGGTTAAAACTATTATCGCGTCTCT
ACTTATGTAGTAAACCTTCATAACTCGATTTTCCATAGCATATCTAAACC
CCCTGTGCTTTCGCTCATTGGAAAGTTTACCATAATTTCGTCCCTGGTGA
GGAAAATACCCCACATTTCAttcccactgagaaattgacttagATTTCAT
ATAAGTTCAAAATTCGATGTAAAGAATTGGGGAGCTACTGTATTTTTTGA
GctcggaacaatagaatttctatccacaTTAAGAATATCCCCGCTGTGGA
GAATGGTACCaatggggctgtgagacaggggtgtatctcTGGAATGTACC
GCTCAATTGAGAGAATCTTTAAGTTATGTTAtgtccaccattatggaagc
aaacattcgatttgcgtaagaattgcctctacagattcgaaaatttgctt
ccataatggcgaaaATTACGTTACagaacaaaatatgaaaatctctatat
ctaaattttgatttatctCTTATAGCTTGCGTTGATAAGTTCAATGATAT
TTTTGGTATGGATTTCTGAAGATGTCGATTTGGAGAAGAATTGCTCATTT
TGTAactaattattttattatttcatattttaaagCGGCAAAAATAGTAT
AAAATAGACGAAAGAAATTTCATAGTTT Coding sequence (CDS) from alignment at sc0000052:288997..293624+ >TCONS_00005286 ID=TCONS_00005286|Name=TCONS_00005286|organism=Clytia hemisphaerica|type=CDS|length=3144bp|location=Sequence derived from alignment at sc0000052:288997..293624+ (Clytia hemisphaerica)
atgTATTCCAGAAAGGTTGTATTCTTGCTTTTGTTGGTCAATTTTGTTTA
CTCCTTTGAAGAGAGTGAAGAAGAAAGTGGTTCAGGCATTGATCCTGGAg
acaaaatattgaaagaatTCGAAGCATTATTATCAAATTTGAAAGACACA
GATCTATTAGTGATGGTGGATGTCACTCAACCAGCTGAAAATTTCACTGA
AGCATTAAAGAATATATCGAAAGACGCAGTGCCTTGTATGAAGAAATTCA
GTGAAGAAAAGAATTCTGTTTCCGTTATGACGTTCTCTTCTACTCCGCAA
TTGATCATCGACTTTGATTCTCCATGTCTAAAAGATATTGCTTGTATGGA
AGACAAAGGAAAAACTATAAAGACAAAAAATGAAGCACGTAATTTGAAGA
AGGCTTTGAGGAAAGCTAAACAACATTTATCGCAtcgtaaaaagattttt
aaagataaaaaacaattacTGCTACTCATCACGTTCGGAGCTGATGAACC
AGTTTCAAGCAAATCCACAAAAATCACCAAGACTAACGTTTTCTCACGTA
TTGGTAAAAAATTCAGCCGAGATGACGTCACAGTTGCCGTCGTCGGAATT
GGGAAGGAGGCGATCAAACAGAAAAGTCATTTAAGTGATATTCTCCACCC
tgaaaagaaaaattcgaaCGAGGAAGATAAATATTTAATGTTTTCTGAAG
AAGACTATATAACGGAGATTCTAATGTTCTCAGTTAATTTCACTTGCGTT
GATAAGTTCAATGATATTTTTGGTATGGATTTCTGAatgTATTCCAGAAA
GGTTGTATTCTTGCTTTTGTTGGTCAATTTTGTTTACTCCTTTGAAGAGA
GTGAAGAAGAAAGTGGTTCAGGCATTGATCCTGGAgacaaaatattgaaa
gaatTCGAAGCATTATTATCAAATTTGAAAGACACAGATCTATTAGTGAT
GGTGGATGTCACTCAACCAGCTGAAAATTTCACTGAAGCATTAAAGAATA
TATCGAAAGACGCAGTGCCTTGTATGAAGAAATTCAGTGAAGAAAAGAAT
TCTGTTTCCGTTATGACGTTCTCTTCTACTCCGCAATTGATCATCGACTT
TGATTCTCCATGTCTAAAAGATATTGCTTGTATGGAAGACAAAGGAAAAA
CTATAAAGACAAAAAATGAAGCACGTAATTTGAAGAAGGCTTTGAGGAAA
GCTAAACAACATTTATCGCAtcgtaaaaagatttttaaagataaaaaaca
attacTGCTACTCATCACGTTCGGAGCTGATGAACCAGTTTCAAGCAAAT
CCACAAAAATCACCAAGACTAACGTTTTCTCACGTATTGGTAAAAAATTC
AGCCGAGATGACGTCACAGTTGCCGTCGTCGGAATTGGGAAGGAGGCGAT
CAAACAGAAAAGTCATTTAAGTGATATTCTCCACCCtgaaaagaaaaatt
cgaaCGAGGAAGATAAATATTTAATGTTTTCTGAAGAAGACTATATAACG
GAGATTCTAATGTTCTCAGTTAATTTCACTTGCGTTGATAAGTTCAATGA
TATTTTTGGTATGGATTTCTGAatgTATTCCAGAAAGGTTGTATTCTTGC
TTTTGTTGGTCAATTTTGTTTACTCCTTTGAAGAGAGTGAAGAAGAAAGT
GGTTCAGGCATTGATCCTGGAgacaaaatattgaaagaatTCGAAGCATT
ATTATCAAATTTGAAAGACACAGATCTATTAGTGATGGTGGATGTCACTC
AACCAGCTGAAAATTTCACTGAAGCATTAAAGAATATATCGAAAGACGCA
GTGCCTTGTATGAAGAAATTCAGTGAAGAAAAGAATTCTGTTTCCGTTAT
GACGTTCTCTTCTACTCCGCAATTGATCATCGACTTTGATTCTCCATGTC
TAAAAGATATTGCTTGTATGGAAGACAAAGGAAAAACTATAAAGACAAAA
AATGAAGCACGTAATTTGAAGAAGGCTTTGAGGAAAGCTAAACAACATTT
ATCGCAtcgtaaaaagatttttaaagataaaaaacaattacTGCTACTCA
TCACGTTCGGAGCTGATGAACCAGTTTCAAGCAAATCCACAAAAATCACC
AAGACTAACGTTTTCTCACGTATTGGTAAAAAATTCAGCCGAGATGACGT
CACAGTTGCCGTCGTCGGAATTGGGAAGGAGGCGATCAAACAGAAAAGTC
ATTTAAGTGATATTCTCCACCCtgaaaagaaaaattcgaaCGAGGAAGAT
AAATATTTAATGTTTTCTGAAGAAGACTATATAACGGAGATTCTAATGTT
CTCAGTTAATTTCACTTGCGTTGATAAGTTCAATGATATTTTTGGTATGG
ATTTCTGAatgTATTCCAGAAAGGTTGTATTCTTGCTTTTGTTGGTCAAT
TTTGTTTACTCCTTTGAAGAGAGTGAAGAAGAAAGTGGTTCAGGCATTGA
TCCTGGAgacaaaatattgaaagaatTCGAAGCATTATTATCAAATTTGA
AAGACACAGATCTATTAGTGATGGTGGATGTCACTCAACCAGCTGAAAAT
TTCACTGAAGCATTAAAGAATATATCGAAAGACGCAGTGCCTTGTATGAA
GAAATTCAGTGAAGAAAAGAATTCTGTTTCCGTTATGACGTTCTCTTCTA
CTCCGCAATTGATCATCGACTTTGATTCTCCATGTCTAAAAGATATTGCT
TGTATGGAAGACAAAGGAAAAACTATAAAGACAAAAAATGAAGCACGTAA
TTTGAAGAAGGCTTTGAGGAAAGCTAAACAACATTTATCGCAtcgtaaaa
agatttttaaagataaaaaacaattacTGCTACTCATCACGTTCGGAGCT
GATGAACCAGTTTCAAGCAAATCCACAAAAATCACCAAGACTAACGTTTT
CTCACGTATTGGTAAAAAATTCAGCCGAGATGACGTCACAGTTGCCGTCG
TCGGAATTGGGAAGGAGGCGATCAAACAGAAAAGTCATTTAAGTGATATT
CTCCACCCtgaaaagaaaaattcgaaCGAGGAAGATAAATATTTAATGTT
TTCTGAAGAAGACTATATAACGGAGATTCTAATGTTCTCAGTTAATTTCA
CTTGCGTTGATAAGTTCAATGATATTTTTGGTATGGATTTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005286-exon-sc0000052-1491911889:288997..289199 | TCONS_00005286-exon-sc0000052-1491911889:288997..289199 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1510915933:288997..289199 | TCONS_00005286-exon-sc0000052-1510915933:288997..289199 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1575043694:288997..289199 | TCONS_00005286-exon-sc0000052-1575043694:288997..289199 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1491911889:289923..290205 | TCONS_00005286-exon-sc0000052-1491911889:289923..290205 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1510915933:289923..290205 | TCONS_00005286-exon-sc0000052-1510915933:289923..290205 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1575043694:289923..290205 | TCONS_00005286-exon-sc0000052-1575043694:289923..290205 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1491911889:292121..292491 | TCONS_00005286-exon-sc0000052-1491911889:292121..292491 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1510915933:292121..292491 | TCONS_00005286-exon-sc0000052-1510915933:292121..292491 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1575043694:292121..292491 | TCONS_00005286-exon-sc0000052-1575043694:292121..292491 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1491911889:293472..293624 | TCONS_00005286-exon-sc0000052-1491911889:293472..293624 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1510915933:293472..293624 | TCONS_00005286-exon-sc0000052-1510915933:293472..293624 | Clytia hemisphaerica | exon |
| TCONS_00005286-exon-sc0000052-1575043694:293472..293624 | TCONS_00005286-exon-sc0000052-1575043694:293472..293624 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:288997..293624 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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