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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052952 ID=TCONS_00052952|Name=TCONS_00052952|organism=Clytia hemisphaerica|type=transcript|length=3180bpRun BLAST on NCBI protein sequence of TCONS_00052952-protein >TCONS_00052952-protein ID=TCONS_00052952-protein|Name=TCONS_00052952-protein|organism=Clytia hemisphaerica|type=polypeptide|length=984bp SAPTEPRSLTAKHNQTGRQLIFSWQEPLPTNGDIIKYSACRLLVVKDKVDRun BLAST on NCBI transcript from alignment at scaffold_222:131073..152736- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052952 ID=TCONS_00052952|Name=TCONS_00052952|organism=Clytia hemisphaerica|type=transcript|length=21664bp|location=Sequence derived from alignment at scaffold_222:131073..152736- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_222:131073..152736- >TCONS_00052952 ID=TCONS_00052952|Name=TCONS_00052952|organism=Clytia hemisphaerica|type=CDS|length=59100bp|location=Sequence derived from alignment at scaffold_222:131073..152736- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052952 vs. Swiss-Prot (Human)
Match: PTPRD (Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2) HSP 1 Score: 582.408 bits (1500), Expect = 0.000e+0 Identity = 298/634 (47.00%), Postives = 398/634 (62.78%), Query Frame = 2
Query: 1112 LYYRRNHAKKEGHIVQMSNMANKKSV----------------KIPTVDPHQPIATNRFEDHVNQLKAHSNYGFSQEYSMINRELEYSYNYSRLQDNNIKNRYHNVPAYDDTRVTLNVMDGESHTDYINANYIDGYERNREYIATQGPLPETIFDFWRMAWESDSTAIVMLTRIEEKGRIKCAHYWPDNGSMALKDILITMTDSQEFPDHVVRTFHITRTGQSVERIVKQFHFVAWPDFGVPADPAAILGFIRKVNNWRLVSP--GGPAIIHCSAGVGRTGTYITIDSQIRSMKSKSELQIYKNVSLLRQQRCLMVQTEDQYVFIHMALLDYMESGETEVDANGLRDYIRKHMQTEHKTGMTGLMDEFIRLAKTDK-KDRFSEANKMVNQAKNRFKNVYPYDDTRVKLSQRPGVEGSDYINANYIDSYGCKDSFIATQAPLESTIGDFWRMIWEQNCGTIVMLSKEFEGQQSKVHPYWPQKGSPKIEHFIVETT---NGPTTYGDYIVREMKLTNTEAGSSRMVKQFQYTTWPDSGSPESGVGIIDLIGQVQKWNSSH-HNGIITVHCSAGVGRTGVFIALTNLIERVKTEGVVDVYQTVKKMRQQRTAMVQTRDQYEFCYRALQEYLESFDVYA 2944
L Y+R A+ + + S++ N K + + P + H PI DH+ +LKA+ N FSQEY I+ ++++ +S L+ N KNRY NV AYD +RV L+ ++G +DY+NANYIDGY + YIATQG LPET DFWRM WE S +VM+T++EE+ R+KC YWP G+ + +T+ D+ E + VRTF + + G S +R V+QF F AWPD GVP P L F+R+V + +P GP ++HCSAGVGRTG +I ID+ + +K + + IY +V+L+R QR MVQTEDQY+FIH ALL+ + G TEV A L YI+K Q E +TG+ EF RLA + RF AN N+ KNR N+ PY+ TRV L GVEGSDYINA++ID Y + ++IATQ PL T DFWRM+WE N +VML+K E + K H YWP + S + ++F+V+ N P YI+RE K+T+ G SR V+QFQ+T WP+ G P+SG G ID IGQV K +G I+VHCSAGVGRTGVFI L+ ++ER++ EGVVD++QTVK +R QR AMVQT DQY+F YRA EYL SFD YA
Sbjct: 1288 LLYKRKRAESDS---RKSSIPNNKEIPSHHPTDPVELRRLNFQTPGMASHPPIPILELADHIERLKANDNLKFSQEYESIDPGQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGYRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSRVKCDQYWPSRGTETHGLVQVTLLDTVELATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRV---KTCNPPDAGPMVVHCSAGVGRTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGNTEVPARNLYAYIQKLTQIETGENVTGMELEFKRLASSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMP----QYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDQYQFSYRAALEYLGSFDHYA 1911 The following BLAST results are available for this feature:
BLAST of TCONS_00052952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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