BlTCONS00061980 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00061980
Unique NameBlTCONS00061980
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:452476..456718+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00061980 ID=BlTCONS00061980|Name=BlTCONS00061980|organism=Branchiostoma lanceolatum|type=mRNA|length=4243bp|location=Sequence derived from alignment at Sc0000049:452476..456718+ (Branchiostoma lanceolatum)
ATCAGGTTACGGGTCACATCAGGGTCAGAGGTCAAACCATAGACATCATG
TCAGCGCCTGATGAATATTTCACTCATAAAGGGATCTTATTCAACAGCAA
AGTAAACGTTAAATCGTTAGAAGATATTGAAACTTTGGCTGTTAAAGAGG
NTCGTTAGAATATATTGAAACTTTGGCTGTTAAAGAGGATGATGTTTTCG
TGGCGACGTATACACGATCAGGTAAGTCGTCAGCTTTGTTCCGAGTGTCT
ATCGATCTTGTCAAAGTTTGAACATGAGTTTGATGTAAGTACCAGTAGAC
TTTATATATCGCTAGCTATGATATCTCTGTGAATGTTTAAACCGGCTAGA
ATATCTTACTACCTTTAATATAGATGATAATCAAAGATTCAGTCGAATGC
ATGCCCGTTTCATTTTCGTAGCCATTTTTGTAAAAAGTGAGTGCTTTTGA
CTGAGATCATGGGACAAGATATTATGTGTCTCGCGATATGAGGCCGACCT
TTGACCTCAAAACCTGATTGCCCCTAGTGAAATATAAGTATAGTTTTAAA
GAATACGCCATGTCGAGGCAAAATTATATCAAGTATCAACGTTAAGCTTA
GTTAAGCATTGTAAAGTTATTTATGTCACAATGCTAATCATTCAAATTAA
TTTCTCTGAACAACTAACGTTATAATGTTATGATCATAGAACTGCAGGTA
ACATTACATTTAATGATTTATGAAAGTCAACAAAGAAACCTTCCTAGACC
ATCTTTCCGAATCTTTGTTAAGATTAAATTATCTTTGTTCTTCCAATCAT
TTCAAAACTAAACCAGGCACCACGTGGACAGAAGAGATCCTGTCTCTTAT
CTACAATGGAGGAGATGTGGAGGAGGTGAAGTCCACTCCGATCTACACCC
GCATCCCTTACCTGGAGTATAAGTACTTCCCCGAGGGCCAGACTGAGTAT
GAGAGGTTCTTAGAACTGCCCTCACCCCGTCTGGGGAAAACTCACGTTCC
ATACAACATGCTGCCCAGGCAGCTACAAGAAGGGAGAGGAAAGGTGGGAA
AACTGTGAATAATTATAAGCTAGTTCACAGTTTGAAGTGCACATGTGTCA
CCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGTGCACATGTGT
CACCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGTGCACATGT
GTCACCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGTGCACAT
GTGTCACCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGTGCAC
ATGTGTCACCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGTGC
ACATGTGTCACCACAGTTTGAAGTGCACATGTGTCACCACAGTTTGAAGT
GCACATGTGTCACCACAGTTTGAATTGCACACATGTCACTTAACAAGATG
GTTCAAGTGTAAATGTAGAAGTTTTGATGCTACGACATATCAAGAAACCT
TTTTTTAGAAAGGATGTAATAAGTGTTGGGGGATGTTACATGAAATATCA
ATTGAATACAATACATAATATAGTCCTTAGGTTTCTTAAATTTGTTACTA
TACCTATTATTCTATGATAATTATTCCAGTTAATCTGCGTTGCACGAAAC
CCCAAAGACGTGGCAGTCTCCAACTTTTACTTTAATGGGATGAACCGAAG
CTTCAAGACACCAGTGTCGTGGGACTCCTTCCTTTCTGACTTTATGACAG
GAAATGGTAAATACAAATACCTTTTCTTTTGTACCATGTACAGAGATATT
GTTTGCAGTGTGTCAGGATGTTTGTGTGTTCATATTTATTTGAATATACA
GTCAATAGAGTGGCAGGGAAGATGGTGCCTAGTACATCATATACAGTATA
CACTATGCAGAATTCACTACCTTTGTAACAAGTAACAATCGTAACAAGAA
CTAATAAATCTTGTTTCTTGTTAGTTCCTTTAGGATCTGTTTTTGACCAC
GTTCTAGGATACTGGGCTCATCGAAGCAACCCTGGCATGCTTTTCATCAA
ATATGAAGACCTACAAAAGGTATGCTCTTTGGATATCAAAGACATTGTGA
ACACCTAACTGCATTCTTATAAGTAGCTGGCGCAAAAATCATAAATGAAA
CACCCGTAAATCTTCAAAATGTTCTCAAGCAAAGCCAAGATATAGATATT
TTTCTCAATTTTGGTCATCTTTTAGATATGTTGCAAATTATCTTGATATG
AAACATTACACACATAGCAGGACCTTCACCTTATTTCGTTAATCTTAAGC
ACTCTGAAGTAGCCGTTTGATTACAGAATACAGCAGTAAAAAAGTTGTGC
TTTCCAATTAATCTTTTATTTGTCACAAATACCCATGTGTTTTTTTCTGA
AAATAACAACATAAACAGGACTTACATGGAACTGTTAAGAAATTAGCAGA
CTTTGTGGGACATCAGTTGCCACCTGGAACAATAGACAAGATAGTGGACC
ACTGCTCGTTCAGGTCCATGAGTGAAAATCCCATGACCAACTACTCCAAA
CACCCAGAGCAACGCTGTCGATTTGACACCTCCAATTCAGAATTCATCAG
GAAAGGTAGGTGTGATAAACCCTCTCTGACTGACATGACTGTGAGTACAT
ACTTGTTAACTAGTGATATGTACCTAAATGTAACTTCAGGTACCAGTACA
GAGATCTAACTTAAGGTACCTGTACATGTACCTGACCTGTTTGACAAAGT
AAAATGTAGTCTTCAATGATGACAGAAACTGAAATAAGCAGTTAACAGAA
TTTTTATTTATACCGCAAGTATCTTGCGCGGGATTTCAAATCAAAATTGG
TGCAGATTTCAACAACCATACAATATTTTCATCTTTTTCAGTGCTAAATT
TTCATTTTTGTGGTACAAATGTAGCAATGATACATTTTTATTGACAAAAT
AGGTCATCAAGTGTAAGATCTATTCAGGTACAGTACAGGTACATTCATGT
TCCGTTATTTTGGACATGTGCCTAAATGATTTTCGTAGTATTGTACTGGT
ACTGGGTACCGGTTTGCAGCCCTACTGTACATATATAGAAAGTACTTGTA
TTCTCATCTTTCCTGTTAGCCATAGAATGATTTCTTATGTATACTATGAG
AAGCTTGTAGTGTAAGATTCTTTTTTATTGTATTTTCTCTTCTTTTTTCA
TTCATCAGGGGTTGTAGGGGATTGGAAGAATCACTTCACAGACAAGCAAA
ATGAAGCATTTGACAAGATGTTGGAAGACAGACTGTCTGGCACAGGTTTG
GAATATGATTTTGGAATCTAGTTCTCTAAATGCCGCCGTCACCATACTGG
TGGAGTGCATGGATCCAAGATGGCCGCCAGTCATTCAGAATGCACAGATT
ATGATTTTAAAGGAAATTCTCCATAGTCCGATAGTTTCTAACTGTGTAGA
GGTAAAAATCATTCCTGTTGATGTAGAGAGAAATTAACATGTAACAGTTC
TAAGCTAATGTTTTCCATGGGTCTTTTACCAACCAAGATGGCGGATTCAA
ATATGTCACAGTTACATGACTGCGATCAACCAATAACTTCACTCATCAAT
AGTCGGTACACTGTATTTCCTTCTGACGGGGCTGGGCGACACATGCACAC
TTCTCTCGTGTCCGTAGCGCTTCCCCTTGTAAAGTATCAGTCCGCCCCCG
AGGAACAGTAGCATGAACACGATACACAGCACGGGCACAATCACTGCTGC
CGTGTTGGTCAAACCACCTGGGTTGTTGGGAGCTGCTGAAACGTAATGTG
CAGTTTGGTCAATGATATGTCAATTTTGGTATATTTGCTATTTTGTTTGA
GTAAATTTACTATTTTGTTAAACCATAAAATAAGAGAGAGTATACGAAGA
TGTGTGGATGTGGCACTAGATTATCTAATAGCCTACTATTCTGCCTGTAG
TTGTTTTGCAAAATAACAGTGAATGTTAAATATTTTTCCTCTCATGTGAA
GGCCATGAACATACACAAGTCTCATGATCTAAGTACCTGAGTTTGCAAGG
AAGTCAAAGGCAACCTCACATCTAAAGAACTGTAATCAATATTTTCATAT
CAATGATATTTCAATCATCTATTCAGCATCAACTGATCATTAAAGGTATA
AATTGAAAAACTTTTGGTTGACTATGAATGATATGTGTGCTTTAGGGGAC
ACCATACTTACCGGAACAGCCTGGTGTGAAGTCAGAATTTGAG

Coding sequence (CDS) from alignment at Sc0000049:452476..456718+

>BlTCONS00061980 ID=BlTCONS00061980|Name=BlTCONS00061980|organism=Branchiostoma lanceolatum|type=CDS|length=558bp|location=Sequence derived from alignment at Sc0000049:452476..456718+ (Branchiostoma lanceolatum)
ATGCTGCCCAGGCAGCTACAAGAAGGGAGAGGAAAGTTAATCTGCGTTGC
ACGAAACCCCAAAGACGTGGCAGTCTCCAACTTTTACTTTAATGGGATGA
ACCGAAGCTTCAAGACACCAGTGTCGTGGGACTCCTTCCTTTCTGACTTT
ATGACAGGAAATGTTCCTTTAGGATCTGTTTTTGACCACGTTCTAGGATA
CTGGGCTCATCGAAGCAACCCTGGCATGCTTTTCATCAAATATGAAGACC
TACAAAAGGACTTACATGGAACTGTTAAGAAATTAGCAGACTTTGTGGGA
CATCAGTTGCCACCTGGAACAATAGACAAGATAGTGGACCACTGCTCGTT
CAGGTCCATGAGTGAAAATCCCATGACCAACTACTCCAAACACCCAGAGC
AACGCTGTCGATTTGACACCTCCAATTCAGAATTCATCAGGAAAGGGGTT
GTAGGGGATTGGAAGAATCACTTCACAGACAAGCAAAATGAAGCATTTGA
CAAGATGTTGGAAGACAGACTGTCTGGCACAGGTTTGGAATATGATTTTG
GAATCTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00061980BlTCONS00061980-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00061980-exon-Sc0000049-1564993656:452476..452696BlTCONS00061980-exon-Sc0000049-1564993656:452476..452696Branchiostoma lanceolatumexon
BlTCONS00061980-exon-Sc0000049-1564993656:453292..453518BlTCONS00061980-exon-Sc0000049-1564993656:453292..453518Branchiostoma lanceolatumexon
BlTCONS00061980-exon-Sc0000049-1564993656:454105..454231BlTCONS00061980-exon-Sc0000049-1564993656:454105..454231Branchiostoma lanceolatumexon
BlTCONS00061980-exon-Sc0000049-1564993656:454450..454544BlTCONS00061980-exon-Sc0000049-1564993656:454450..454544Branchiostoma lanceolatumexon
BlTCONS00061980-exon-Sc0000049-1564993656:454894..455080BlTCONS00061980-exon-Sc0000049-1564993656:454894..455080Branchiostoma lanceolatumexon
BlTCONS00061980-exon-Sc0000049-1564993656:455684..456718BlTCONS00061980-exon-Sc0000049-1564993656:455684..456718Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:452476..456718 +
Properties
Property NameValue
GeneIDBlCUFF030568