TCONS_00046289 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046289
Unique NameTCONS_00046289
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046289 ID=TCONS_00046289|Name=TCONS_00046289|organism=Clytia hemisphaerica|type=transcript|length=1569bp
GAGCTCCGGTGGCCAGGTACATTACGTTCGAATCCCAACGTCAGCTTTAC
AACAACAAGGCGCGACAGGTGTATCTCAACTCATCTTACAACAGCactta
caacaacaacaacaacaacaacagcaacagcaACAAACAACACAAGAATC
ATCACAACAAACACAACCATCCAatcagcaacaacaacaacaaactaGTA
GCAACGGTGTTGAACCTTCGATTCCTTCCTACGCCAATTCATCGGGAGGT
GTATACGTGGTCGCTCCTCAAAACACTCAACAGCAATCAACACAAAATAA
TAGTGGCGTCAACAATGAATCAAGTTAAAGCTGTCGAAAAATGTGAAAGG
TTAGTTTGCATTTTCATTGTCTTGACTGGTGAAGTTGGCAACTTTTGACG
CATTGGGTATGTGGTTGAATGTCTTACCTCTTGGAGTGGTATCGATTGCA
AGCCTTGTCATGACGGGATTCAGACAAACTTGTGAAGACCTCGCTGATGA
AGAGAGAGAGACTTTTTCAAAGAAGACGTGTCATGACTCTATTTTGCAAA
TTGTGGTCTCAAGAAGACCACGGAAAAATTAACCCGAATTGGGAACCCTG
TTATTATTAGGGATAAGTATGTTCATGGATGCAACGCCCGTTTCCAGATT
CACGTGTTAAAATCTTTTGTGACAATTGATTGCTTAATAGTTAGAGAGAA
TGTTACTAAACATTATAGTATCAAACATGCTATGTTGATTCCCACGTGGA
GTTGAGAATCCGATGGTATAGATGGAATACCACTTAAAAATAAGAGTGGA
ATAACTAAACTAAAGCTGTATTGATGGGTTTTAGAAATGATAATCCCCAC
TACTCgcgattatcttttcaacgagatTTTAATTCAAACTCCATCCTAAG
CTATTCGTAATTATAAGTTTATTGACCAGCTAATTTAGAAAGTGATGAGT
GCTCGGTCTTACCAagttacacacttttttattagaacccagtttataag
aagaGCACTTAGTCTGGAATTTGgagagtgataaaaaaagaacATCGTAA
GTTAACATAACAAGCCTGAGAATAAGTTAACCAAATTAGCTCGAATTAAC
AGAATTCTAAGAAACTTTCGAAATTTCAGTAATTCTTTCCGttccttaaa
ggttttatttttacataagtgtttccgtttcatatcaggatagtgtcttg
ctattgttatattatgctgatataagcattCTCTCTCTCTGATcgtcttg
ctccacatccgtgtcaatccaatgtaaaaaagcttgtaaattaaaattaa
tgagtaagcaaacgatatcactcttacttaaaaacaaaaactttaagCTT
TCATTATCCGAATTGTGAATTTAAAAATTGTTACATTATACTCTAACGTG
TAACATTTTTTTCCTCAGCAAGCCTGTTGTATAGTTGATATTATATTATT
TCCTCCTAaatttgttgtttatttatttgttttgtatcaaaatgcttttt
atcttgttaaagattgaaaagaaaatctttggtttagtttttttaaagaa
aaaatcatgtataTTTAGA
Run BLAST on NCBI

protein sequence of TCONS_00046289-protein

>TCONS_00046289-protein ID=TCONS_00046289-protein|Name=TCONS_00046289-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
APVARYITFESQRQLYNNKARQVYLNSSYNSTYNNNNNNNSNSNKQHKNH
HNKHNHPISNNNNKLVATVLNLRFLPTPIHREVYTWSLLKTLNSNQHKII
VASTMNQVKAVEKCERLVCIFIVLTGEVGNF
Run BLAST on NCBI

transcript from alignment at scaffold_108:377055..382361-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046289 ID=TCONS_00046289|Name=TCONS_00046289|organism=Clytia hemisphaerica|type=transcript|length=5307bp|location=Sequence derived from alignment at scaffold_108:377055..382361- (Clytia hemisphaerica)
GAGCTCCGGTGGCCAGGTACATTACGTTCGAATCCCAACGTCAGCTTTAC
AACAACAAGGCGCGACAGGTGTATCTCAACTCATCTTACAACAGCACTTA
CAACAACAACAACAACAACAACAGCAACAGCAACAAACAACACAAGAATC
ATCACAACAAACACAACCATCCAATCAGCAACAACAACAACAAACTAGTA
GCAACGGTGTTGAACCTTCGGTAAGTTGGCTTAAATACTAATTTTCTTTA
GGGGGGAAACTTTCGCAGGGATAGCTTTCTCAAAGGAGCATTTTTATCAA
AATGTCCAAAAATGAGGTAATCTTTGCATGTCTCAGCCAATCAGAGCTTT
ACTCGACGTTTATTCGTGACCTTGTTACATGAATCTGCTAATTGGAAAAT
CATGTATTAACTTTGCATTACTAAATTGATCAGCTAAATTTTTTACAAAA
AGTTATTATTTACTGATACTCAGTTAACTGGCATCTTAGCTTTTTAAAGT
TAAACGTGCCCTTAGAATTAGAAAAAAAGCTCGTTGTAAAAATTTCAAAA
ATTACCTTCTAAATGTAATTTTATCTATGCAATCTCTTATACATTTTTTT
CGGAGGAAATGTTNGCTTGTAAAAATTTCTAAAACTACCTTCTAAATGTT
ATTTTATCTATGCAATCTCTAATACATTTTTTTTCGGATGAAATGTTCTT
CTCATATCTTTTATTTTGATAAAACCATAGAAATGACGTCATGCTATCCT
ATAGTACCATGGTAATTTTGATAGTTTGTTTGATAAAAGGCTTCGTCTTT
TATCAATTGCGTTCGATTTTTATACTACGTCATTTAATATCATTCTCTAC
CTTGTACACATATGAATGTTATAACGGATACAAAAAACCGTAAGAGCAGA
GGTGTGACCTAGTTTACGGTTAACAGTTTTATTTTTACATAAGTGTTCCC
GTTTCATATCAGACACATATTTCATATCAGGACAGTGTCTGCCTATTGTT
ATATTATGTTGACATAAACAAAAAAATGTTTTTCTTTCCCTCTTTCTGAT
CATCTTGCTCCACATCCGTTATCACTCTTATTTAAAAACAAAACCTTTAA
GGAAAAAGAAGTCATATCGAGAAAAGATTGTGAACAGTTTCGATACGCAC
CTCACGAAAAAAAATCTTTATTGTCCTTACGATTTTATTTTAACTTATGA
TAAATTATTTTAGCAGATTTCATTTCTGTTATTTAGCGAGGGCCTTTGAG
GTAATGTTTGGTCTTAAATGCCCACTTCCTTCTATCTTTTCATTACCCTA
TAGAGGGGAGTTTCAGGGGGTTCGATTCGGCAATTCCGCCAATTTTTTTC
CCGATTTCAAAAATCAGCCTTCGAAAATTCCTTTGAATTTCAAGGCTTTG
TCAACAATTTCGGGAGCTTTGAATATTTTTTCCCTTTTGCTGGATTCCGT
TTTCCCGCATTAAAAACACCCAACTTTCCGTCACCGGCAGAGAACCCAAT
CCTACCAATTCTAGAATTCCACTTATTAAAAATTGTAGTGTGTGAAATCA
ATAAGGTGTAATTTATGAAAATCTAAAACTTAGTGAGTTTCAAATTACGT
GTTCGCATCATAACGTTGCAACTAGCATGCTTACTTTTTCAAGAACTCAA
GATTGGTTGATTGGCCTGTCAATAATAATGAGAATGCATGTCTCTCCGTA
TGCATCTAATACTTTAGAGAAGCCACTAAGACTTAAGACTAGCCACAGCT
TTCACTAACTGCCACCCGCTACAAATGCTTATAACGACTAAATGCTGATT
AAAGCTTTTTAATGCTTTATAGTGAAAGTTTGGAAAATTATTAGGAACAA
TTAGAATGATTCTTCTCAAAAGCATTTTCTTTGGGATATCAATAAGCTAT
CATATATCAAATATATTTTTTCTAAAAAGGTGAATTACTTTTACAAAGAA
TAAAATGCGAGATTATAAAAGTGTCCAGGTAGAGTCAATTACAAGTACCA
AAACACTCAAAAGACATGCAACGATATATTCCAACCAATTTGAAATATAA
ATGACCCATAGTACAACCAAACTGCATAAATAATGCCATGAACCAGAAAC
ATAACAGTTGCATCATTCTAATAACAGCATTTCGAGCAGTAACCAAAAAT
AGACAGGTAACAACGTATTCAGGAGTTTTTCCAACGGCTTAACAAAGGAT
ATCGTGATCTAAAATTGTTTACATTAAAAAGATTTAATAGTAATTTAGAA
CTTGTAACTGCGTCATGTGAAGGATGGAAGACGATATGTGGTATAAGTAG
CAGTAACGAGGCAATATTGATTAGCAGGAACCAGGAATTTTTGGCAGTTT
TGTTTCCGGAATGCGGGTGAAGGAAAAAAGTTATCATGCGGCCGGCCGCA
AAATAATTTTTTTTTGCTATTTTTGATAATTTATGGCTCATTGAAATAGA
GTTTAAGAATAACTTTTATGTATAAACACAGCATAAATTATGCCCTAAAT
TACAACAAGTACGAAAGCATAATGCACCTCCAAGGCATGACTGAAGTTTA
TAACATAGCCCTGAGTGCATGGTTCTTCAGTACTCATTTTTAACATAAGT
TGAGAATATATAAAAAAGATATCTCAACCTTTGAATGAGAGTTTTATTCT
ACTTTGATTTACACAAAAGTGATCGAAGACCTTGAAAGTTAAAATATACA
ACCTCAAATTTAACCGTATAGTATTCTTTTCACAAAACGTTAACCTTTTC
CATGACGATGCCACCACATATGTCATAGAAATCCAAAAGCTCTATTCAAT
CTTTAAAGATTATTTAACCCTCTTCAAAAGTTTGCGGCCGGGTCAGAAAA
AAAAATTTTCACCCGGCCGGTTTCCGGAAACAAGAAATTCTTTTTGTTTC
GCCTTACTGTCGAAGTACCATAACACAGGATCTTTAAGCATTCTTTATGT
TGAATGACGATTGTCGAATAAATTTAGTTACAGTGGAATTTCGTTGCCAA
TTCAACCACCAACAATAATCACTTTTGTCCATATTCAATCATTGTTCTTC
TATTATCATTTTAATCATTGTTCATTATTGTTCTGTGGTAAAAATTGTAA
TCAATTTAGAACTTGGAAGTAATAAATATAAATCCAATCAATCAAATAAA
ATGTGTACAAAATCATAAATAATACGTAATTCAATAATTCTGTATAAAAA
TATAACAACATCCTTCAAATTCATTATTGGTATATGTATATAGGTATCTT
GTTTAATCCCAAAGTCAAAAGTAAACGCGTTTTGACTGCAGGAGGAGAGA
GCTTGAATTAAAAAAAACTTCCAGAAACTTCCCCATTCTTCCATTTCCTG
CATGTTGACCAATCGGGCAAAATTCTACAAGCGGAATAGAATCTACTGTC
GAAAGCTGAGTAGAATGCCCGTTTTTAGGCTAGCAACTGCCGTCCCGGAA
AAAAAAACGAACGTTTACGGAAGAGACTAACTACGGGGATGCTTGCGCGA
CAAAACACAAAAACAACAAAATTTCGAGATTCCAGTCCAATATCTATGCG
TGAAGCTATGACTGTCTCCTCACTCACTTCGTTCGTTGCGGGGGCAAAAA
GTGGTCGAATTTTTCTAAAATTGCGTACACTAGTTTCTTGGATAAAATTT
CATTTTTTTAAATTGATCTCTCTGGATAGTCGGAAAACTACTGCTAAGCC
CAGTTTGGTGCGTGCATTCGACTATGCATGGTTACTGGATATTTGGAAGA
ACGATTCCACCGATGCGGACGACAAAGGCTATATCCTGGGATAGTTACCT
ATTCTAGGATAGATTGTAGCGCTTACTAGACACCGTTGACCCTATGCTCG
TAACAAAGCAGAGCCATGGCCTATTGTATTTATTGTTACTGAGTATATAG
TTGAAAAAGAAATATGTATATTCAGTGTGTAATATGTTCAATTTTTTTTA
TATCACAGATTCCTTCCTACGCCAATTCATCGGGAGGTGTATACGTGGTC
GCTCCTCAAAACACTCAACAGCAATCAACACAAAATAATAGTGGCGTCAA
CAATGAATCAAGTTAAAGCTGTCGAAAAATGTGAAAGGTTAGTTTGCATT
TTCATTGTCTTGACTGGTGAAGTTGGCAACTTTTGACGCATTGGGTATGT
GGTTGAATGTCTTACCTCTTGGAGTGGTATCGATTGCAAGCCTTGTCATG
ACGGGATTCAGACAAACTTGTGAAGACCTCGCTGATGAAGAGAGAGAGAC
TTTTTCAAAGAAGACGTGTCATGACTCTATTTTGCAAATTGTGGTCTCAA
GAAGACCACGGAAAAATTAACCCGAATTGGGAACCCTGTTATTATTAGGG
ATAAGTATGTTCATGGATGCAACGCCCGTTTCCAGATTCACGTGTTAAAA
TCTTTTGTGACAATTGATTGCTTAATAGTTAGAGAGAATGTTACTAAACA
TTATAGTATCAAACATGCTATGTTGATTCCCACGTGGAGTTGAGAATCCG
ATGGTATAGATGGAATACCACTTAAAAATAAGAGTGGAATAACTAAACTA
AAGCTGTATTGATGGGTTTTAGAAATGATAATCCCCACTACTCGCGATTA
TCTTTTCAACGAGATTTTAATTCAAACTCCATCCTAAGCTATTCGTAATT
ATAAGTTTATTGACCAGCTAATTTAGAAAGTGATGAGTGCTCGGTCTTAC
CAAGTTACACACTTTTTTATTAGAACCCAGTTTATAAGAAGAGCACTTAG
TCTGGAATTTGGAGAGTGATAAAAAAAGAACATCGTAAGTTAACATAACA
AGCCTGAGAATAAGTTAACCAAATTAGCTCGAATTAACAGAATTCTAAGA
AACTTTCGAAATTTCAGTAATTCTTTCCGTTCCTTAAAGGTTTTATTTTT
ACATAAGTGTTTCCGTTTCATATCAGGATAGTGTCTTGCTATTGTTATAT
TATGCTGATATAAGCATTCTCTCTCTCTGATCGTCTTGCTCCACATCCGT
GTCAATCCAATGTAAAAAAGCTTGTAAATTAAAATTAATGAGTAAGCAAA
CGATATCACTCTTACTTAAAAACAAAAACTTTAAGCTTTCATTATCCGAA
TTGTGAATTTAAAAATTGTTACATTATACTCTAACGTGTAACATTTTTTT
CCTCAGCAAGCCTGTTGTATAGTTGATATTATATTATTTCCTCCTAAATT
TGTTGTTTATTTATTTGTTTTGTATCAAAATGCTTTTTATCTTGTTAAAG
ATTGAAAAGAAAATCTTTGGTTTAGTTTTTTTAAAGAAAAAATCATGTAT
ATTTAGA

Coding sequence (CDS) from alignment at scaffold_108:377055..382361-

>TCONS_00046289 ID=TCONS_00046289|Name=TCONS_00046289|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_108:377055..382361- (Clytia hemisphaerica)
ATTCCTTCCTACGCCAATTCATCGGGAGGTGTATACGTGGTCGCTCCTCA
AAACACTCAACAGCAATCAACACAAAATAATAGTGGCGTCAACAATGAAT
CAAGTTAAAGCTGTCGAAAAATGTGAAAGGTTAGTTTGCATTTTCATTGT
CTTGACTGGTGAAGTTGGCAACTTTTGAGCTCCGGTGGCCAGGTACATTA
CGTTCGAATCCCAACGTCAGCTTTACAACAACAAGGCGCGACAGGTGTAT
CTCAACTCATCTTACAACAGCACTTACAACAACAACAACAACAACAACAG
CAACAGCAACAAACAACACAAGAATCATCACAACAAACACAACCATCCAA
TCAGCAACAACAACAACAAACTAGTAGCAACGGTGTTGAACCTTCGATTC
CTTCCTACGCCAATTCATCGGGAGGTGTATACGTGGTCGCTCCTCAAAAC
ACTCAACAGCAATCAACACAAAATAATAGTGGCGTCAACAATGAATCAAG
TTAAAGCTGTCGAAAAATGTGAAAGGTTAGTTTGCATTTTCATTGTCTTG
ACTGGTGAAGTTGGCAACTTTTGAGCTCCGGTGGCCAGGTACATTACGTT
CGAATCCCAACGTCAGCTTTACAACAACAAGGCGCGACAGGTGTATCTCA
ACTCATCTTACAACAGCACTTACAACAACAACAACAACAACAACAGCAAC
AGCAACAAACAACACAAGAATCATCACAACAAACACAACCATCCAATCAG
CAACAACAACAACAAACTAGTAGCAACGGTGTTGAACCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029557XLOC_029557Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046289-proteinTCONS_00046289-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046289-exon-scaffold_108-1575043694:382142..382361TCONS_00046289-exon-scaffold_108-1575043694:382142..382361Clytia hemisphaericaexon
TCONS_00046289-exon-scaffold_108-1575043694:377055..378403TCONS_00046289-exon-scaffold_108-1575043694:377055..378403Clytia hemisphaericaexon
TCONS_00046289-exon-scaffold_108-1510915933:382142..382361TCONS_00046289-exon-scaffold_108-1510915933:382142..382361Clytia hemisphaericaexon
TCONS_00046289-exon-scaffold_108-1510915933:377055..378403TCONS_00046289-exon-scaffold_108-1510915933:377055..378403Clytia hemisphaericaexon
TCONS_00046289-exon-scaffold_108-1491911889:382142..382361TCONS_00046289-exon-scaffold_108-1491911889:382142..382361Clytia hemisphaericaexon
TCONS_00046289-exon-scaffold_108-1491911889:377055..378403TCONS_00046289-exon-scaffold_108-1491911889:377055..378403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_108supercontigscaffold_108:377055..382361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.8214	10.8072	5.19309	6.76693	24.2923	17.1664	19.5677	15.7845	7.89587	10.0844	9.54665	5.59432	6.20689	7.64848	5.93795	7.06755	8.58989	9.21243	5.98932	6.37528	7.55515	7.61833	8.36306	9.98269	11.5783	10.2165	3.00308	2.64488	4.53835	4.57473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046289 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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