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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045710 ID=TCONS_00045710|Name=TCONS_00045710|organism=Clytia hemisphaerica|type=transcript|length=2563bp
aaacattcgaatttgTGTAAAGGATCACTTCCACAGATTCTAATGTTTGA
TTCTATAATGGTGGAAAGTATGTaacatgaaaaacatgaaaaagggTTAA
GAATCAGCTCCATTAAGAAAATAATGCATTTCAGTCTTTTGAGTTCAGGT
AGACTTTTCAGCATTTCAAAGCCAGTCCCTGAAACCTTGACTGGGATTCA
AACAAATCTAAATGGGgtgttgatttttaaaaataatctgaTGTTTCATT
TACAAAAATAAGAATGAAAATGAGCGATATAATCTAAGAGTCAAAATCCC
TATATAACAAAAAAGTAGTAATTatcacaaaaatcaatattttctagCTT
AGCAAATTAACAGAAATAACAAATCTAGCAATAACCAGACCTGAAAGAAT
AACATTCAAATGACTCGTTTGTAGGAAATATCAGATAAGAAATCTTCTCC
CAACTTCAGGGGCATTTTTCTacttcaaaatatgaaattgctGCTTTAGA
TATGGGTTATTTTCctctttatatttttcattgaacattttgaaaaagca
GTGAAGCATGGAAACATTGTCTATTCATTTGGGGCTTTAGATTTCTGATC
AGTTCTTTGTTGAAACTTCTTTTGTCACTATGagtcagtgctgcaaataa
ggaaatttcagttggccggtaTTTTTTTGAACGCAACGAAAATAATTTGA
GCAGGGGGTCTGGCAGACAGCAGTATGAAATTTAATTAACATATAGCTAA
TACCGGGttagcttgttttttatttgacgctcatgaaaattttagaaatt
agaAAAGTCTGAAATGACCTTTACATACATTGGCTAAACACCTGtattaa
ttcaaaatctattCTTCTTTTAATTGGAAACGTTATTAAGTATTTATCTA
AGCCTCTAGTCTTtaaattttaaccggacaaaatgaaagATTGAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCT
CTTACTACTGTTGGcttaagaaattgaaaatagACCACTGAAAACACAAG
TGAAATTGACCTGGATGACAAATCTAGTCAGTGTCTTTTCCAAGCACCCA
AATGCCCCCGTTAGACGGTGGCattaaactcaattcaaattgagttCATT
GATAAATTCCAtaaattcattcaattttaaccgttttaaagtGCTAGTTA
AGACAAATATGCTCAGCTTTCTGAACCCCCCACCAGGGCTAGCCCTGGAC
CCACAGGGGGGCTCAAGGCTCCCCAAGCCTCTGATATCGCGGCTTACGCC
TTTgttaaaaactcaatttgaaagtaCAAACGGAGGCATTGCTTGGTGGT
TGGAAAAATCCCTGCTAGTAATCCTGATAAAGGAGTTACTTACACGAATT
AAAACTGCCTTCAACAGACTTTTTAATTTCCTAGGTGggcctttttaaaa
atttccatgataGATACCCAATACCCCacagattgttcttaaaaatCAGA
TTCATTAATCCTGGTACAGAAACctaattaataaaaaatatcatGCATAT
ATTTATTGCAAAGCTTTTGCATGGAAACGGAGATGATCTTCGACAAAAGT
AGCAATAAAATAATAACTATGATCATATCCATCTTGCATGCGAGAAATca
atccaacattgttgttgGATGCAGCAGCTTGAACCAAATTATCAGGCAAA
AGTTGGTCTTGCTTGAGAAAACCATCCTCATTCCCTTGATCTGaaagaat
ttcaattttagggCCACTGTATGTTTTTACAAGCTCACACGAGTCATACC
CTTTCCATGATTCCTGATTTTCTCCCAAATAAcctaaaaaagccttcaat
CCCCATGGACATTTCATAGGATTGCAAATGGGAGCAAACGCAGAGATAGA
CTTGTATTGACCAGGATTTTTCAATCCGCAAACAATGGCACCATGTCCAC
CCATGCTATGACCCATGATAGATTGATTTCCGTTTGTTGGGAAATTTGCA
GCAATGACGGTTGGCAACTCCTTGGTGACATAAGAAAACATACGATAAtt
tgttttccatttttcttcAGTTGCGTCCACGTAAAATCCAGCTCCAGTTC
CGAAATCCCAACCATCTTCTTCTCCCTCAATGTTGCATCCTCTTGGGCTT
GTATCTGGACAAACTATGATAAGGCCAAGCTCACAGGCTAATTTTTGAGC
ACCAGCTTTTGTGATAAAGTTTTGCTCAGTGCATGTAAGTCCAGAAAGCC
AATACAATACAGGGCATTTCTGATCATTCAATGCTTTTGGTGGCAACATA
ACTGCAAAGGtcatctttgtttttgtttcttctgaATCGTGTGTGAAAAC
TTTGACATTTCCGCCAAAACATTTCACTGTAGATTTTTGCTCCAGTGTTG
TGGCCATCTTGCTGAATGCTTTTGTTACTGAGAAAAGTTTACCTGTAGAT
TTCTTTGGGAGCAAAGAATTAGCCAGACGACCAAAAATCATGTACGTCCT
GGTACGTCCAGTACAACCaccaaaatctttgaatatGTTCACGCGCATGA
GACAAATCGGAAA Run BLAST on NCBI transcript from alignment at scaffold_100:853931..856568+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045710 ID=TCONS_00045710|Name=TCONS_00045710|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at scaffold_100:853931..856568+ (Clytia hemisphaerica)
aaacattcgaatttgTGTAAAGGATCACTTCCACAGATTCTAATGTTTGA
TTCTATAATGGTGGAAAGTATGTaacatgaaaaacatgaaaaagggTTAA
GAATCAGCTCCATTAAGAAAATAATGCATTTCAGTCTTTTGAGTTCAGGT
AGACTTTTCAGCATTTCAAAGCCAGTCCCTGAAACCTTGACTGGGATTCA
AACAAATCTAAATGGGgtgttgatttttaaaaataatctgaTGTTTCATT
TACAAAAATAAGAATGAAAATGAGCGATATAATCTAAGAGTCAAAATCCC
TATATAACAAAAAAGTAGTAATTatcacaaaaatcaatattttctagCTT
AGCAAATTAACAGAAATAACAAATCTAGCAATAACCAGACCTGAAAGAAT
AACATTCAAATGACTCGTTTGTAGGAAATATCAGATAAGAAATCTTCTCC
CAACTTCAGGGGCATTTTTCTacttcaaaatatgaaattgctGCTTTAGA
TATGGGTTATTTTCctctttatatttttcattgaacattttgaaaaagca
GTGAAGCATGGNACTGCTTTAGATATGGGTTATATTTTCctctttatatt
tttcattgaacattttgaaaaagcaGTGAAGCATGGAAACATTGTCTATT
CATTTGGGGCTTTAGATTTCTGATCAGTTCTTTGTTGAAACTTCTTTTGT
CACTATGagtcagtgctgcaaataaggaaatttcagttggccggtaTTTT
TTTGAACGCAACGAAAATAATTTGAGCAGGGGGTCTGGCAGACAGCAGTA
TGAAATTTAATTAACATATAGCTAATACCGGGttagcttgttttttattt
gacgctcatgaaaattttagaaattagaAAAGTCTGAAATGACCTTTACA
TACATTGGCTAAACACCTGtattaattcaaaatctattCTTCTTTTAATT
GGAAACGTTATTAAGTATTTATCTAAGCCTCTAGTCTTtaaattttaacc
ggacaaaatgaaagATTGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTCTTACTACTGTTGGcttaagaaatt
gaaaatagACCACTGAAAACACAAGTGAAATTGACCTGGATGACAAATCT
AGTCAGTGTCTTTTCCAAGCACCCAAATGCCCCCGTTAGACGGTGGCatt
aaactcaattcaaattgagttCATTGATAAATTCCAtaaattcattcaat
tttaaccgttttaaagtGCTAGTTAAGACAAATATGCTCAGCTTTCTGAA
CCCCCCACCAGGGCTAGCCCTGGACCCACAGGGGGGCTCAAGGCTCCCCA
AGCCTCTGATATCGCGGCTTACGCCTTTgttaaaaactcaatttgaaagt
aCAAACGGAGGCATTGCTTGGTGGTTGGAAAAATCCCTGCTAGTAATCCT
GATAAAGGAGTTACTTACACGAATTAAAACTGCCTTCAACAGACTTTTTA
ATTTCCTAGGTGggcctttttaaaaatttccatgataGATACCCAATACC
CCacagattgttcttaaaaatCAGATTCATTAATCCTGGTACAGAAACct
aattaataaaaaatatcatGCATATATTTATTGCAAAGCTTTTGCATGGA
AACGGAGATGATCTTCGACAAAAGTAGCAATAAAATAATAACTATGATCA
TATCCATCTTGCATGCGAGAAATcaatccaacattgttgttgGATGCAGC
AGCTTGAACCAAATTATCAGGCAAAAGTTGGTCTTGCTTGAGAAAACCAT
CCTCATTCCCTTGATCTGaaagaatttcaattttagggCCACTGTATGTT
TTTACAAGCTCACACGAGTCATACCCTTTCCATGATTCCTGATTTTCTCC
CAAATAAcctaaaaaagccttcaatCCCCATGGACATTTCATAGGATTGC
AAATGGGAGCAAACGCAGAGATAGACTTGTATTGACCAGGATTTTTCAAT
CCGCAAACAATGGCACCATGTCCACCCATGCTATGACCCATGATAGATTG
ATTTCCGTTTGTTGGGAAATTTGCAGCAATGACGGTTGGCAACTCCTTGG
TGACATAAGAAAACATACGATAAtttgttttccatttttcttcAGTTGCG
TCCACGTAAAATCCAGCTCCAGTTCCGAAATCCCAACCATCTTCTTCTCC
CTCAATGTTGCATCCTCTTGGGCTTGTATCTGGACAAACTATGATAAGGC
CAAGCTCACAGGCTAATTTTTGAGCACCAGCTTTTGTGATAAAGTTTTGC
TCAGTGCATGTAAGTCCAGAAAGCCAATACAATACAGGGCATTTCTGATC
ATTCAATGCTTTTGGTGGCAACATAACTGCAAAGGtcatctttgtttttg
tttcttctgaATCGTGTGTGAAAACTTTGACATTTCCGCCAAAACATTTC
ACTGTAGATTTTTGCTCCAGTGTTGTGGCCATCTTGCTGAATGCTTTTGT
TACTGAGAAAAGTTTACCTGTAGATTTCTTTGGGAGCAAAGAATTAGCCA
GACGACCAAAAATCATGTACGTCCTGGTACGTCCAGTACAACCaccaaaa
tctttgaatatGTTCACGCGCATGAGACAAATCGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045710-exon-scaffold_100-1491911889:853931..854466 | TCONS_00045710-exon-scaffold_100-1491911889:853931..854466 | Clytia hemisphaerica | exon |
| TCONS_00045710-exon-scaffold_100-1510915933:853931..854466 | TCONS_00045710-exon-scaffold_100-1510915933:853931..854466 | Clytia hemisphaerica | exon |
| TCONS_00045710-exon-scaffold_100-1575043694:853931..854466 | TCONS_00045710-exon-scaffold_100-1575043694:853931..854466 | Clytia hemisphaerica | exon |
| TCONS_00045710-exon-scaffold_100-1491911889:854542..856568 | TCONS_00045710-exon-scaffold_100-1491911889:854542..856568 | Clytia hemisphaerica | exon |
| TCONS_00045710-exon-scaffold_100-1510915933:854542..856568 | TCONS_00045710-exon-scaffold_100-1510915933:854542..856568 | Clytia hemisphaerica | exon |
| TCONS_00045710-exon-scaffold_100-1575043694:854542..856568 | TCONS_00045710-exon-scaffold_100-1575043694:854542..856568 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:853931..856568 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0018738 | S-formylglutathione hydrolase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0046294 | formaldehyde catabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0046294 |
formaldehyde catabolic process |
| molecular_function |
GO:0018738 |
S-formylglutathione hydrolase activity |
Blast
BLAST of TCONS_00045710 vs. Swiss-Prot (Human)
Match: ESTD (S-formylglutathione hydrolase OS=Homo sapiens GN=ESD PE=1 SV=2) HSP 1 Score: 390.193 bits (1001), Expect = 2.113e-128 Identity = 182/281 (64.77%), Postives = 220/281 (78.29%), Query Frame = -1
Query: 1559 TLEQKSTVKCFGGNVKVFTHDSEETKTKMTFAVMLPPKALNDQKCPVLYWLSGLTCTEQNFITKAGAQKLACELGLIIVCPDTSPRGCNIEGEEDGWDFGTGAGFYVDATEEKWKTNYRMFSYVTKELPTVIAANFPTNGNQ-SIMGHSMGGHGAIVCGLKNPGQYKSISAFAPICNPMKCPWGLKAFLGYLGENQESWKGYDSCELVKTYSGPKIEILSDQGNEDGFLKQDQLLPDNLVQAAASNNNVGLISRMQDGYDHSYYFIATFVEDHLRFHAKAL 2398
L+Q S+ KCFGG KVF HDS E KM FAV LPPKA KCP LYWLSGLTCTEQNFI+K+G + A E GL+++ PDTSPRGCNI+GE++ WDFGTGAGFYVDATE+ WKTNYRM+SYVT+ELP +I ANFP + + SI GHSMGGHGA++C LKNPG+YKS+SAFAPICNP+ CPWG KAF GYLG +Q WK YD+ LVK+Y G +++IL DQG +D FL QLLPDN + AA + + ++ R+Q+GYDHSYYFIATF+ DH+R HAK L
Sbjct: 2 ALKQISSNKCFGGLQKVFEHDSVELNCKMKFAVYLPPKA-ETGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCPWGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFI-AACTEKKIPVVFRLQEGYDHSYYFIATFITDHIRHHAKYL 280
The following BLAST results are available for this feature:
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