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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045716 ID=TCONS_00045716|Name=TCONS_00045716|organism=Clytia hemisphaerica|type=transcript|length=1730bp
TTCAGACTACGATAtagagaaaaatattaaaataaaatgagtGCCAGAAG
TATTTGTTTACAATGTTATAGAAAAGGATTCTTTTCTTTGTCATCGAAAA
ATGGATTAAGAGTCTATAATGTACGAAAATATGCGACTGAACCAAAGGGG
TTGATGAGTGCAAGTGAAAAAGAGAAATTGGCATATCTCAGAAGGTCCAA
AGAGGTCTTTGAAACCAACCTTTATGAGCCATCCATTGATTTGGCAGACA
CAAGAGGAATAAGTGTCAACCACATGACCAAAGAGAATAGAAGTTCAGCT
TTGNGCAGACACAAGAGGAATAAGTGTCAACCACATGACCAAAGAGAATA
GAAGCTCGGCTTTATTAAGACAATGTTTATCAGAACAACCAGATCGAGAA
GGTTTTTTCAAAGCAGTCGATATTTATGTTGATCGAAACAAAAGACGACA
TGGACATATGGAATTTATAGTCACTGCTATGAAATTTATCGAACCGTATG
GGTTAGGGAAGGATCTGGAGATCTATAATAAACTTTTAGATGTGTTCCCA
CGAGACAAATTTGTGAATAGGACATTATTTGATGCGATATGGCCAAAGCA
ACATCCTCAGATGAATTTAGCTttagatattttgacaaaaatggaaTGGC
AGGGAATTATGCCTAGTGAAGAAACACACGATTTATTGTACTCTATCTTT
GGGCGTGCTAGTTTCCCTTTAAAGAAAGTTTATCGAATGTGGTTTTGGTT
TGAGACGTTGAAAGATATCAATCCTTATTATCTTCCAGATGAAGTATATA
AAGATAGGTTGAATATTGTTCGAGCAGGAATCGATCGCATTCTTGGGAAT
AATGATGGTACCAAAATTATTGAAATCTCATCAGCAGAAGAGACAGAAGA
GGAGTCATCAGAAATGGTGGATTACAAACATTTCATCATAAGTTCACAAA
GTGAATATCAAAAACAATGTATTAGTATGCTAAACACTGACAAAACAGTA
TTCGTTGAAGGCCCTATCAATATTTGGTTGGGCAAGAAGAGAGAAGAATA
TTTTATATTGAAAACAGGGCGTCAAGATTTGATGACTTGTGATGAGTTGA
CAGTACAACCGGATGAAGAAAGAGAAGGAGTGGTATTAGCCGTTTGTTTT
GCAACGCGTCCTTACAGAGAGAACATTTCAAAATGGCTGACCTATCTTCA
AGAAGAAAACAAGCAACTGAAAGAAATGAACATTGTTTATAATATTTCTG
ATGGCGAAGTTGGTTATGAAAGACCCACATTGGCTCCACCTGTagagaaa
aattaatttaataaTGGTGTATATTTAGATAAAAGCAATCTGACTTGTTG
TGAGCATTGACCAATACATTGACTACATCTGTAGAAGAAAATGATTCAAT
TGTGGTGTCTTTTTGTTAAAAGAAGCAATTGTGAGTAATAATTAAAGATC
CGCAGGAAGGAGTTGAACTGATGGAGTGTTCGTTGCTTGAAAATAAGTGC
CTTGCAAGACTTTTTATTCTCTCTTTAAACtattttattacaaaaaaaat
gatttaaacctttatttgacttgatatttgtgatttttgtgATGTGATAA
GATAATTGATCTCCCCTAGCTTGGAGAAATTTGCATTGGTTGCAAATATT
GAGTTTAGAGCCCATATTAGACTAGGAATGAGTCATCCAAGATGCGGTGC
AAAAATCAAGGCTCTCTTTTTCTTACTTGG Run BLAST on NCBI transcript from alignment at scaffold_100:57581..60875- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045716 ID=TCONS_00045716|Name=TCONS_00045716|organism=Clytia hemisphaerica|type=transcript|length=3295bp|location=Sequence derived from alignment at scaffold_100:57581..60875- (Clytia hemisphaerica)
TTCAGACTACGATATAGAGAAAAATATTAAAATAAAATGAGTGCCAGAAG
TATTTGTTTACAATGTTATAGAAAAGGATTCTTTTCTTTGTCATCGAAAA
ATGGATTAAGAGTCTATAATGTACGAAAATATGCGACTGAACCAAAGGGG
TTGATGAGTGCAAGTGAAAAAGAGAAATTGGCATATCTCAGAAGGTCCAA
AGAGGTCTTTGAAACCAACCTTTATGAGCCATCCATTGATTTGGCAGACA
CAAGAGGAATAAGTGTCAACCACATGACCAAAGAGAATAGAAGTTCAGCT
TTGNGCAGACACAAGAGGAATAAGTGTCAACCACATGACCAAAGAGAATA
GAAGCTCGGCTTTATTAAGACAATGTTTATCAGAACAACCAGATCGAGAA
GGTTTTTTCAAAGCAGTCGATATTTATGTTGATCGAAACAAAAGACGACA
TGGACATATGGAATTTATAGTCACTGCTATGAAATTTATCGAACCGTATG
GGTTAGGGAAGGATCTGGAGATCTATAATAAACTTTTAGATGTGTTCCCA
CGAGACAAATTTGTGAATAGGACATTATTTGATGCGATATGGCCAAAGCA
ACATCCTCAGATGAATTTAGCTTTAGATATTTTGACAAAAATGGAATGGC
AGGGAATTATGCCTAGTGAAGAAACACACGATTTATTGTACTCTATCTTT
GGGCGTGCTAGTTTCCCTTTAAAGAAAGTTTATCGAATGTGGTTTTGGTT
TGAGACGTTGAAAGATATCAATCCTTATTATCTTCCAGATGAAGTATATA
AAGATAGGTTGAATATTGTTCGAGCAGGAATCGATCGCATTCTTGGGAAT
AATGATGGTACCAAAATTATTGAAGTGAGTTCTTTTGCACTGTTCTCCTT
TTTGTTGCTTGAGAAACAATACATTTTCAAACTTACTCAATTTTATTTTT
TACGACAAAAGCTTTTCAATTTTCCTGATATATACTTTAAAAAATGTGTT
GTTTCATTATCTTTAAAATTCTTTTTGATATGTCTAGATCAGTATTTTGA
TTTTTCCTACAAATTATGGATGACACCATGGGGGAGGCAAAATTGGTGTT
GGGTATGTGCAAGTTATGCATAAGTCAGCATAAGTGTCTCTTTTTTACAC
CTTTGAAAGTCTCTCACAGGGAAGTAAAACAGCAACCGAATCTCTGACCG
GGTCCCAAAATTATGAAATATCAAAAATCAATTCCCTCACAGAGTCGTTA
CAAATCCTCGTAATTTCGACCAAAGTTTGAAAACTCGAAATTCAGTATTT
CACAGGGTCGACTTTCGAACTTTGGCACGGACATGGCTATTACCTCTCAA
AGCTAGTACCCCTGGGCACCCTTATCTGTGAAATTTTGCGTGATTCAATC
CATTGAAGTACCCTTCAAGGGGAACTCTCACCCTCGCCAAATGATTCTTC
TAATATTTGTGAAGCTCTTTAAAGGTGTGATTTGATGTAAATGGGTTTTT
TATCACAGCACTTGGCTTTCAATTGGGGCCGTCCACATAGTACGTACGCA
CTAAAGGGGGGAGGATGGTGGTCTTCTCAAAAGCGTATGCTTGTGTACAG
GGGGGGAGGGGTCAAAGGAAAATGTACGTACGCAGAGAAAAATTTTTCAT
AGCCCTTTTTTGCTTGTTTTTTTGTCGACTTTTACGCTTCTTATACGCAT
CAAGGAAAAGAGAAAGTTTCTTAATAAACATTGAGTTTCATGTATGAAAT
AAAGGTCCGAACCAAACGATTTGAATCCGAATTTTTTTTCAACTGATGAG
GGGGTTAGTGAATGAAAAAGTACGTACTTACCAGGAGGGGGTATAGCCAT
TTGCGTACGCTTGCGTATAGGGGGGGGTATTCGATTTTCGACATTTTAGT
GCGTACGTGTACTATGTGGACGGCCGCATTATTCTATAATAACCTTTTAA
AACATGTTTCATGCCCAGATCTCATCAGCAGAAGAGACAGAAGAGGAGTC
ATCAGAAATGGTGGATTACAAACATTTCATCATAAGTTCACAAAGTGAAT
ATCAAAAACAATGTATTAGTATGCTAAACACTGACAAAACAGTATTCGTT
GAAGGCCCTATCAATATTTGGTTGGGCAAGAAGAGAGAAGAATATTTTAT
ATTGAAAACAGGGCGTCAAGATTTGATGACTTGTGATGAGTTGACAGTAC
AACCGGATGAAGAAAGAGAAGGTTGCTTTTTTGTTTGTTGTAGATTCCTA
ACATTTGTTAACCAGGAAAAAGTGTTGGCTATAAAGGGTTAAGCCCTTGC
TAACAGACAGCGACGTGTCATGCATTTTTGAAATATGAATTAATTCGCAC
ATATTGTAGATTTACAATATCTACACATGTAGTAGATTTACGGATTCTAA
TATCTACACATATGGTAGATTTACGGATGTTTACATATCTACACATATGG
TAGATTTACGGATGTTTACATATCTACACATATGGTAGATTTACGGATGT
TTACATATCTACACATATGGTAGAAATAAGTGCGAGATTGGCCTGTACCT
TTCCTCTAAAGAGTCCATCTGTTTGTATGATCTATGATGATTAACATAAC
TTTTTCAAAATCTCCTAAATTTCTGTGTATTTAGGGAAGGAATGAGTTCA
TTTTTTCAGTGTATCTTCATTCCATTTTATTTGTTATTTCAGGAGTGGTA
TTAGCCGTTTGTTTTGCAACGCGTCCTTACAGAGAGAACATTTCAAAATG
GCTGACCTATCTTCAAGAAGAAAACAAGCAACTGAAAGAAATGAACATTG
TTTATAATATTTCTGATGGCGAAGTTGGTTATGAAAGACCCACATTGGCT
CCACCTGTAGAGAAAAATTAATTTAATAATGGTGTATATTTAGATAAAAG
CAATCTGACTTGTTGTGAGCATTGACCAATACATTGACTACATCTGTAGA
AGAAAATGATTCAATTGTGGTGTCTTTTTGTTAAAAGAAGCAATTGTGAG
TAATAATTAAAGATCCGCAGGAAGGAGTTGAACTGATGGAGTGTTCGTTG
CTTGAAAATAAGTGCCTTGCAAGACTTTTTATTCTCTCTTTAAACTATTT
TATTACAAAAAAAATGATTTAAACCTTTATTTGACTTGATATTTGTGATT
TTTGTGATGTGATAAGATAATTGATCTCCCCTAGCTTGGAGAAATTTGCA
TTGGTTGCAAATATTGAGTTTAGAGCCCATATTAGACTAGGAATGAGTCA
TCCAAGATGCGGTGCAAAAATCAAGGCTCTCTTTTTCTTACTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045716-exon-scaffold_100-1575043694:60002..60875 | TCONS_00045716-exon-scaffold_100-1575043694:60002..60875 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1575043694:58655..58907 | TCONS_00045716-exon-scaffold_100-1575043694:58655..58907 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1575043694:57581..58183 | TCONS_00045716-exon-scaffold_100-1575043694:57581..58183 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1510915933:60002..60875 | TCONS_00045716-exon-scaffold_100-1510915933:60002..60875 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1510915933:58655..58907 | TCONS_00045716-exon-scaffold_100-1510915933:58655..58907 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1510915933:57581..58183 | TCONS_00045716-exon-scaffold_100-1510915933:57581..58183 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1491911889:60002..60875 | TCONS_00045716-exon-scaffold_100-1491911889:60002..60875 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1491911889:58655..58907 | TCONS_00045716-exon-scaffold_100-1491911889:58655..58907 | Clytia hemisphaerica | exon |
| TCONS_00045716-exon-scaffold_100-1491911889:57581..58183 | TCONS_00045716-exon-scaffold_100-1491911889:57581..58183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_100 | supercontig | scaffold_100:57581..60875 - |
Blast
BLAST of TCONS_00045716 vs. Swiss-Prot (Human)
Match: ECSIT (Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial OS=Homo sapiens GN=ECSIT PE=1 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 2.380e-37 Identity = 92/343 (26.82%), Postives = 161/343 (46.94%), Query Frame = 2
Query: 362 LLRQCLSEQPDREGFFKAVDIYVDRNKRRHGHMEFIVTAMKFIEPYGLGKDLEIYNKLLDVFPRDKFVNRTLFDAIWPKQHPQMNLALDILTKMEWQGIMPSEETHDLLYSIFGRASFPLKKVYRMWFWFETLKDINPYYLPDEVYKDRLNIVRAGIDRILGNNDGTKXXXXXXXXXXXXXXXXMVDYKHFIISSQSEYQKQCISMLNTDKTVFVEGPINIWLGKKREEYFILKTGRQDLMTC-----------------------------DELTVQPDEEREGVVLAVCFATRPYRENISKWLTYLQEENKQLKEMNIVYNISD-------GEVGYERPTL 1282
L Q + D+ F + V + + + R+ GH++FI A++ + YG+ +DL +YN+LL++FP++ F R + I+ Q + +L +ME G+MP++ET LL IFGR S+P+ K+ R+ WF ++NP+ +P ++ +D + + G+ + D + + I ++ + + I+ QS Q+ ++ N + VFVEGP ++WL K Y IL R DL+ D +E EG V A+C A + ++KW+ LQE N L ++ +V+ ++ G E P L
Sbjct: 75 LFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREYGVERDLAVYNQLLNIFPKEVFRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETEFLLIQIFGRKSYPMLKLVRLKLWFPRFMNVNPFPVPRDLPQDPVELAMFGLRHM--EPDLSARVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHNPARPVFVEGPFSLWLRNKCVYYHIL---RADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINEVEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPL 412
The following BLAST results are available for this feature:
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