TCONS_00045545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045545
Unique NameTCONS_00045545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045545 ID=TCONS_00045545|Name=TCONS_00045545|organism=Clytia hemisphaerica|type=transcript|length=416bp
AAAACATGGACGGTAAACAAAAGGCTGTACGATTAATAAGtcagtaaaga
aaaaaaaaatatttataccgtaaaatacataaataattaaagtaacaaaa
tatttataatgCTAATTATAATCACAGGGATAAAACCCTGGCTAATGctt
tatcaaaataatatttttagcttCTTTATTAAATTCTTCTAGAgtcttta
aagattttatgcTTTCTGGCAGATCATCATACCAACGAGCTTGACATTGA
AATGTACCATCATTAACAACTTTGATCATTGGTTCTTTGAGTGTACAGCG
AAGCTTCTTACTAGGGTTAGAGAATTCTGCATTTAGATAACTGGGATGAT
TTTTATCTCGACGTGACTTGTGAACAATTTTAGCAGTGTTAAGTTCGATG
TACTCTTTGACTGGTA
Run BLAST on NCBI

transcript from alignment at sc0008254:5..420

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045545 ID=TCONS_00045545|Name=TCONS_00045545|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0008254:5..420 (Clytia hemisphaerica)
TACCAGTCAAAGAGTACATCGAACTTAACACTGCTAAAATTGTTCACAAG
TCACGTCGAGATAAAAATCATCCCAGTTATCTAAATGCAGAATTCTCTAA
CCCTAGTAAGAAGCTTCGCTGTACACTCAAAGAACCAATGATCAAAGTTG
TTAATGATGGTACATTTCAATGTCAAGCTCGTTGGTATGATGATCTGCCA
GAAAgcataaaatctttaaagacTCTAGAAGAATTTAATAAAGaagctaa
aaatattattttgataaagCATTAGCCAGGGTTTTATCCCTGTGATTATA
ATTAGcattataaatattttgttactttaattatttatgtattttacggt
ataaatattttttttttctttactgaCTTATTAATCGTACAGCCTTTTGT
TTACCGTCCATGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029122XLOC_029122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045545-exon-sc0008254-1491911889:5..420TCONS_00045545-exon-sc0008254-1491911889:5..420Clytia hemisphaericaexon
TCONS_00045545-exon-sc0008254-1510915933:5..420TCONS_00045545-exon-sc0008254-1510915933:5..420Clytia hemisphaericaexon
TCONS_00045545-exon-sc0008254-1575043694:5..420TCONS_00045545-exon-sc0008254-1575043694:5..420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008254supercontigsc0008254:5..420 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19973	0.835662	1.74651	1.70869	6.47161	2.8905	4.71557	8.14596	2.45526	3.22013	0.185681	2.69194	2.67477	0.82863	1.16785	1.07313	0.514647	0.527497	0	0.19065	1.15997	1.21241	0.196512	0	0.368028	0.164228	1.17505	1.25404	1.33161	0.969069
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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