TCONS_00045191 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045191
Unique NameTCONS_00045191
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045191 ID=TCONS_00045191|Name=TCONS_00045191|organism=Clytia hemisphaerica|type=transcript|length=514bp
TGGCATAACTCAAAAGAAATCTTAGGTATTTCAAAGTATATTAGGAGAGT
ATTAATGTCTTACCGTCTTCATTTTCGAAATGTGTTGGTGTTGTGGTAGC
GTTGGCCATTTTGCTTTAAATCTTTAGTTGAAAGTATTGAGTTGAAAGTC
GTGAGTTGAAATGTATGGTGTTTTAAAATTCTTGGGGTTTTTATTCACAT
ACTAATTTTATTGTctccattttttattttagatgtCTATTGTGTTTGTG
AGTTTTAATAtctattgttttattgttttaaaaaaatgttaggTTTATCT
TATTGGTTGGAGTTTCTTCTTGTGTGTCACGTGCTAGTATCACAAGTTTT
CATTGGTTGATACGTTTTTTGAGGTGGTATGGTGGTGGGNNNNNNNNNTA
AAAAAATGTTAGGTTTATCTTATTGGTTGGAGTTTCTTCTTGTGTGTCAC
GTGCTAGTATCACAAGTTTTCATTGGTTGATACGTTTTTTGAGGTGGTAT
GGTGGTGGGTGCTT
Run BLAST on NCBI

transcript from alignment at sc0007167:152..665

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045191 ID=TCONS_00045191|Name=TCONS_00045191|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0007167:152..665 (Clytia hemisphaerica)
AAGCACCCACCACCATACCACCTCAAAAAACGTATCAACCAATGAAAACT
TGTGATACTAGCACGTGACACACAAGAAGAAACTCCAACCAATAAGATAA
ACCTAACATTTTTTTANNNNNNNNNCCCACCACCATACCACCTCAAAAAA
CGTATCAACCAATGAAAACTTGTGATACTAGCACGTGACACACAAGAAGA
AACTCCAACCAATAAGATAAAcctaacatttttttaaaacaataaaacaa
tagaTATTAAAACTCACAAACACAATAGacatctaaaataaaaaatggag
ACAATAAAATTAGTATGTGAATAAAAACCCCAAGAATTTTAAAACACCAT
ACATTTCAACTCACGACTTTCAACTCAATACTTTCAACTAAAGATTTAAA
GCAAAATGGCCAACGCTACCACAACACCAACACATTTCGAAAATGAAGAC
GGTAAGACATTAATACTCTCCTAATATACTTTGAAATACCTAAGATTTCT
TTTGAGTTATGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028774XLOC_028774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045191-exon-sc0007167-1491911889:152..665TCONS_00045191-exon-sc0007167-1491911889:152..665Clytia hemisphaericaexon
TCONS_00045191-exon-sc0007167-1510915933:152..665TCONS_00045191-exon-sc0007167-1510915933:152..665Clytia hemisphaericaexon
TCONS_00045191-exon-sc0007167-1575043694:152..665TCONS_00045191-exon-sc0007167-1575043694:152..665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007167supercontigsc0007167:152..665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.348961	0	0.131704	0.128852	3.08325	2.10726	1.04684	2.40494	0.392084	0.485659	0.539728	0.171869	0	0	0	0.194968	0	0.0895016	0.247302	0.388176	0.337396	0.16457	0.133371	0	0.249776	1.00314	0.547844	0.510663	0.31545	0.394618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045191 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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