TCONS_00044728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044728
Unique NameTCONS_00044728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044728 ID=TCONS_00044728|Name=TCONS_00044728|organism=Clytia hemisphaerica|type=transcript|length=821bp
cttgttacaaaaatgacgattagaaaatcaaataaaacctACTTAGTATA
TTAGTCTCTATCTTCCAGATGTGCGGTAAATGATAGCGTAATTCCGTTCA
GACATAAGTCATCCGTTCGGACATAAGTCATCCGATGTGAACTGTAGTTG
CAAGATCTTGTTGCGCTCTACTTCACGACCGTTCTCTCTTTCTTCGatct
tcttcttttcctttctttttccGTCTCTTTTCTCTCCTCCCTCTGTCATG
TTTTTGGGTCCTTTTATATCATTTGTCTGATATGCAATTTCACAATGGAT
TGCCGTTAGGACCCGGACGGAAGTCGTTTTGTGTATTATATAACGTCGTT
TATGGGGCCTAGCGGAAGTGTCGTTAGCCCCCAAATTGATTTCCTGTTTT
TTTTGCAATTAATGTTTCTTATTACATGAAAACGCTTCATCACACTCCTC
CCAACCATAGCGTACTGATGTCCTCATCAGTTCAAGTCCACCGTAGTCGA
TAAGTCTGTTCAATTCATGTTGGTGTCATCATCATTACACCAATTTTGTc
gtaaattgttaaaaaaatttattataaagaaaaacagaattTCCTGTATA
CAAAATAGTTCTAAAATTTCCTATTATTATTACGATTATatatgttatat
aattttttgttttgttttgttttgttttttttttgttttttttttgtttt
gtttttgtgttttgttttgtttttcttttctttttctttttccgtCTCTT
TTCTCTCCTCCCTCTGTCATGTTTTTGGGTCCTTTTATATCATTTGTCTG
ATATGCAATTTCACAATGGAT
Run BLAST on NCBI

transcript from alignment at sc0006095:3..823

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044728 ID=TCONS_00044728|Name=TCONS_00044728|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0006095:3..823 (Clytia hemisphaerica)
ATCCATTGTGAAATTGCATATCAGACAAATGATATAAAAGGACCCAAAAA
CATGACAGAGGGAGGAGAGAAAAGAGacggaaaaagaaaaagaaaagaaa
aacaaaacaaaacacaaaaacaaaacaaaaaaaaaacaaaaaaaaaacaa
aacaaaacaaaacaaaaaattatataacatatATAATCGTAATAATAATA
GGAAATTTTAGAACTATTTTGTATACAGGAaattctgtttttctttataa
taaatttttttaacaatttacgACAAAATTGGTGTAATGATGATGACACC
AACATGAATTGAACAGACTTATCGACTACGGTGGACTTGAACTGATGAGG
ACATCAGTACGCTATGGTTGGGAGGAGTGTGATGAAGCGTTTTCATGTAA
TAAGAAACATTAATTGCAAAAAAAACAGGAAATCAATTTGGGGGCTAACG
ACACTTCCGCTAGGCCCCATAAACGACGTTATATAATACACAAAACGACT
TCCGTCCGGGTCCTAACGGCAATCCATTGTGAAATTGCATATCAGACAAA
TGATATAAAAGGACCCAAAAACATGACAGAGGGAGGAGAGAAAAGAGACg
gaaaaagaaaggaaaagaagaagatCGAAGAAAGAGAGAACGGTCGTGAA
GTAGAGCGCAACAAGATCTTGCAACTACAGTTCACATCGGATGACTTATG
TCCGAACGGATGACTTATGTCTGAACGGAATTACGCTATCATTTACCGCA
CATCTGGAAGATAGAGACTAATATACTAAGTaggttttatttgattttct
aatcgtcatttttgtaacaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028342XLOC_028342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044728-exon-sc0006095-1491911889:3..823TCONS_00044728-exon-sc0006095-1491911889:3..823Clytia hemisphaericaexon
TCONS_00044728-exon-sc0006095-1510915933:3..823TCONS_00044728-exon-sc0006095-1510915933:3..823Clytia hemisphaericaexon
TCONS_00044728-exon-sc0006095-1575043694:3..823TCONS_00044728-exon-sc0006095-1575043694:3..823Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006095supercontigsc0006095:3..823 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347821	0.16959	0.131274	0.0642154	0.39088	0.370654	0.521709	0.837287	0.0488503	0.60509	0.234926	0.617725	0.853942	1.00097	0.427926	0.105976	0.130554	0.178418	0	0.193454	0.0560488	0.082016	0	0.120857	2.67632	2.77739	0	0.169665	0.193027	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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