TCONS_00044649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044649
Unique NameTCONS_00044649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044649 ID=TCONS_00044649|Name=TCONS_00044649|organism=Clytia hemisphaerica|type=transcript|length=660bp
aagaacattttttatgattttgcaGGATTTTGAGTACCAGATACTAACTT
GATGCCTCATATTTGGTGTTGAGACCACAATTTAGTCCCTTGatacaaag
ttgcaaaaaaattttttcaattaagACCACCATATAGTACCATgtactaa
gttgttttttacttaccttatcAGACCACCACCCGGCACTGGCCCCCACA
ACTTAGTACCACCCCCCCTGTTTGACCATGCACacttctaattaaaaaaa
acctgaaCCCTAGCAATCTTGACAACAGGGCTATAGACTATTTGCTATTC
AGGCTGATACAGGATGTCATTTTGTATAATTAAGGCCTCAAGCATTAAAA
AATTACACATTAATGCATAATATGCACTAATtattttcttatcattgttA
TGACGCTGGAGTTTTAAATTATAATAATATAACAACATACTGATTAgcaa
aatacatgtttttttacaggcatacaaaaatccaaaaactagCGCCTGGA
TCAGCCTGGATGCTTAGATCAAGAGATTGATAACTAAAGGGTTGCTTGTA
CATCTTCAAAGCAAAATTTCAGGGAAATTCTGTAATCCCAGCCAAAAACT
GGCAAATCTGGAAAAATACATTGCAGGCTTTAggtaatgcttagcatatg
cttaaaattt
Run BLAST on NCBI

transcript from alignment at sc0005935:1657..2316

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044649 ID=TCONS_00044649|Name=TCONS_00044649|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0005935:1657..2316 (Clytia hemisphaerica)
aaattttaagcatatgctaagcattaccTAAAGCCTGCAATGTATTTTTC
CAGATTTGCCAGTTTTTGGCTGGGATTACAGAATTTCCCTGAAATTTTGC
TTTGAAGATGTACAAGCAACCCTTTAGTTATCAATCTCTTGATCTAAGCA
TCCAGGCTGATCCAGGCGctagtttttggatttttgtatgcctgtaaaaa
aacatgtattttgcTAATCAGTATGTTGTTATATTATTATAATTTAAAAC
TCCAGCGTCATaacaatgataagaaaataATTAGTGCATATTATGCATTA
ATGTGTAATTTTTTAATGCTTGAGGCCTTAATTATACAAAATGACATCCT
GTATCAGCCTGAATAGCAAATAGTCTATAGCCCTGTTGTCAAGATTGCTA
GGGttcaggttttttttaattagaagtGTGCATGGTCAAACAGGGGGGGT
GGTACTAAGTTGTGGGGGCCAGTGCCGGGTGGTGGTCTgataaggtaagt
aaaaaacaacttagtacATGGTACTATATGGTGGTcttaattgaaaaaat
ttttttgcaactttgtatCAAGGGACTAAATTGTGGTCTCAACACCAAAT
ATGAGGCATCAAGTTAGTATCTGGTACTCAAAATCCtgcaaaatcataaa
aaatgttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028265XLOC_028265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044649-exon-sc0005935-1491911889:1657..2316TCONS_00044649-exon-sc0005935-1491911889:1657..2316Clytia hemisphaericaexon
TCONS_00044649-exon-sc0005935-1510915933:1657..2316TCONS_00044649-exon-sc0005935-1510915933:1657..2316Clytia hemisphaericaexon
TCONS_00044649-exon-sc0005935-1575043694:1657..2316TCONS_00044649-exon-sc0005935-1575043694:1657..2316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005935supercontigsc0005935:1657..2316 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.231849	0.520741	0.54728	1.04381	0.111349	0.495784	0.373299	0.106451	0.0790367	0.30684	0	0.632793	0.0673845	0	0.15399	0.126491	0.0590532	0.206071	0.419697	0.0875046	0.323723	0.465078	0.190774	0.0820006	0	0	0.604118	0	0.187361	0.193015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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