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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044431 ID=TCONS_00044431|Name=TCONS_00044431|organism=Clytia hemisphaerica|type=transcript|length=946bp
GATAATTCAAGTGCAAGTGATTGACAAAATGAGATATATCACTAGCTTGT
CGATTTGAAGTTTGTCATTTTCCTCGAAAGATGCCTGATAAATTATCATA
TTATATCATACTCGATTCGACACtctttattttatgtttttttgcagGCG
GACAAACACATGCCATTACATTTGAAGAAGAAGTTGAGAAAGAACAAAAA
CAAGATACGAACTTTCGAAATCATGCCGCCCTCAGGAACCCTTTTACCCG
CTCAAAAGATCAAcattcaaatcaaatttatgcCTTCCGAAGAGGTGAGT
TATATGGAGAAGTTGCAAATAGAAGTGGCACAAAGCACTCAAGAGTTGTC
CGTTACGTGCAGAGGTCAAGGTTTGGAGCCACAAATCGAGTTCGAGAATT
CATTGCTTCAATTTGGTCCCATTCTCCCTTACACTGGGAAAGATGAGGTG
TCGGTCAAAGTCACCAATCCTTGCGCATTTCCCATCGAATTTTATTCATT
GGAGTTTGACAAACAGTATGTTGAGGAGGAGAAGGTTTTACGAGCGATGG
TTGGTTACGACGACCAAAACACTGTCCTCTTACCACCACGCGAGCCTGGT
TCTCTGTTACCCAAACAACTTCTCGATCATTATGAACGAACCAATCTGAA
TAACCaagacaacaacaacaataacaacatGATGAGTTCATTCGTGGAAG
ATGTCCAACCGTTAACCAGCGATCCAGTTCGCAGCAACATCACTCTTTCT
TCCAACAACCTTGCCAATAATGTCATTAACGAACAATCAAACGAGCAAAC
TCAAACGGACGTCAAGAAAAGTGAAGAAGCTATGGAGGAGCAAACAACAA
AAGCAGAAGAGAACAAGGATAATGAAGGTTGATTGCTCTGCTTTTTCTAT
TTTGAGTGTTCTCTGACATCACATGCATGTTTCAATGTAAAACTTT Run BLAST on NCBI protein sequence of TCONS_00044431-protein >TCONS_00044431-protein ID=TCONS_00044431-protein|Name=TCONS_00044431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MPLHLKKKLRKNKNKIRTFEIMPPSGTLLPAQKINIQIKFMPSEEVSYME
KLQIEVAQSTQELSVTCRGQGLEPQIEFENSLLQFGPILPYTGKDEVSVK
VTNPCAFPIEFYSLEFDKQYVEEEKVLRAMVGYDDQNTVLLPPREPGSLL
PKQLLDHYERTNLNNQDNNNNNNMMSSFVEDVQPLTSDPVRSNITLSSNN
LANNVINEQSNEQTQTDVKKSEEAMEEQTTKAEENKDNEG Run BLAST on NCBI transcript from alignment at sc0005562:9..4177+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044431 ID=TCONS_00044431|Name=TCONS_00044431|organism=Clytia hemisphaerica|type=transcript|length=4169bp|location=Sequence derived from alignment at sc0005562:9..4177+ (Clytia hemisphaerica)
GATAATTCAAGTGCAAGTGATTGACAAAATGAGATATATCACTAGCTTGT
CGATTTGAAGTTTGTCATTTTCCTCGAAAGATGCCTGATAAATTATCATA
TTATATCATACTCGATTCGACACtctttattttatgtttttttgcagGCG
GACAAACACATGCCATTACATTTGAAGAAGAAGTTGAGAAAGAACAAAAA
CAAGATACGAACTTTCGAAATCATGCCGCCCTCAGGAACCCTTTTACCCG
CTCAAAAGATCAAcattcaaatcaaatttatgcCTTCCGAAGAGGTTAGT
CTTTTTGTTTGTCGCAACACTGTCAAATACTGAAAGGCAATAAGTGAGAA
ATTTGCCGCTaacaaaacccacaaaacatGGTAAATTAGAATATATGCGC
TAACTTTTCCAATTGATAGTTTTTCTtctcaaatctttgtttgatagGTG
AGTTATATGGAGAAGTTGCAAATAGAAGTGGCACAAAGCACTCAAGAGTT
GTCCGTTACGTGCAGAGGTCAAGGTTTGGAGCCACAAATCGAGTTCGAGA
ATTCATTGCTTCAATTTGGTCCCATTCTCCCTTACACTGGGAAAGATGAG
GTGTCGGTCAAAGTCACCAATCCTTGCGCATTTCCCATCGAATTTTATTC
ATTGGAGTTTGACAAACAGTATGTTGAGGAGGAGAAGGTAACACATTTTT
TACATGAAGTTGTCTTTTTACTGGAATCAGGTTTCTCCGNAAGGTAACAC
ATTTTTTACATGAAGTTGTCTTTTTACTGGAATCAGGTTTCTCCGTTTCT
CCGATAGATCAAAGCAATCCCTTTAAATTTATAACACTTAATCAATTTGC
TCTCGCACCGTCGTGGTTATTTTGCTAATATTCTGGTCCATTTAGTATCC
CGAAAACTATGTTCTTtaaacagacagacagacagacagatgcCTTCCCA
TGCAAGGGGATAGGCCTCACCAAAAGGTGAGGATCACAGCACCTCCTAAA
GCTAAAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNAAACTatgttctttaaaaacttaCCCTATCTG
AAACACTGCAAAATCATATAGGTTCTGTTCTCCTGCATTCTGACGAAGAT
TTCAAGTTCTTCTATTTGTCGGTTTGATTTGATTCTGTTTTTTAATTACT
CCACAAGGTTTTACGAGCGATGGTTGGTTACGACGACCAAAACACTGTCC
TCTTACCACCACGCGAGCCTGGTTCTCTGTTACCCAAACAACTTCTCGAT
CATTATGAACGAACCAATCTGAATAACCaagacaacaacaacaataacaa
catGATGAGTTCATTCGTGGAAGATGTCCAACCGTTAACCAGCGATCCAG
TTCGCAGCAACATCACTCTTTCTTCCAACAACCTTGCCAATAATGTCATT
AACGAACAATCAAACGAGCAAACTCAAACGGACGTCAAGAAAAGTGAAGA
AGCTATGGAGGAGCAAACAACAAAAGCAGAAGAGAACAAGGATAATGAAG
GTTGATTGCTCTGCTTTTTCTATTTTGAGTGTTCTCTGACATCACATGCA
TGTTTCAATGTAAAACTTT Coding sequence (CDS) from alignment at sc0005562:9..4177+ >TCONS_00044431 ID=TCONS_00044431|Name=TCONS_00044431|organism=Clytia hemisphaerica|type=CDS|length=2169bp|location=Sequence derived from alignment at sc0005562:9..4177+ (Clytia hemisphaerica)
ATGCCATTACATTTGAAGAAGAAGTTGAGAAAGAACAAAAACAAGATACG
AACTTTCGAAATCATGCCGCCCTCAGGAACCCTTTTACCCGCTCAAAAGA
TCAAcattcaaatcaaatttatgcCTTCCGAAGAGGTGAGTTATATGGAG
AAGTTGCAAATAGAAGTGGCACAAAGCACTCAAGAGTTGTCCGTTACGTG
CAGAGGTCAAGGTTTGGAGCCACAAATCGAGTTCGAGAATTCATTGCTTC
AATTTGGTCCCATTCTCCCTTACACTGGGAAAGATGAGGTGTCGGTCAAA
GTCACCAATCCTTGCGCATTTCCCATCGAATTTTATTCATTGGAGTTTGA
CAAACAGTATGTTGAGGAGGAGAAGGTTTTACGAGCGATGGTTGGTTACG
ACGACCAAAACACTGTCCTCTTACCACCACGCGAGCCTGGTTCTCTGTTA
CCCAAACAACTTCTCGATCATTATGAACGAACCAATCTGAATAACCaaga
caacaacaacaataacaacatGATGAGTTCATTCGTGGAAGATGTCCAAC
CGTTAACCAGCGATCCAGTTCGCAGCAACATCACTCTTTCTTCCAACAAC
CTTGCCAATAATGTCATTAACGAACAATCAAACGAGCAAACTCAAACGGA
CGTCAAGAAAAGTGAAGAAGCTATGGAGGAGCAAACAACAAAAGCAGAAG
AGAACAAGGATAATGAAGGTTGAATGCCATTACATTTGAAGAAGAAGTTG
AGAAAGAACAAAAACAAGATACGAACTTTCGAAATCATGCCGCCCTCAGG
AACCCTTTTACCCGCTCAAAAGATCAAcattcaaatcaaatttatgcCTT
CCGAAGAGGTGAGTTATATGGAGAAGTTGCAAATAGAAGTGGCACAAAGC
ACTCAAGAGTTGTCCGTTACGTGCAGAGGTCAAGGTTTGGAGCCACAAAT
CGAGTTCGAGAATTCATTGCTTCAATTTGGTCCCATTCTCCCTTACACTG
GGAAAGATGAGGTGTCGGTCAAAGTCACCAATCCTTGCGCATTTCCCATC
GAATTTTATTCATTGGAGTTTGACAAACAGTATGTTGAGGAGGAGAAGGT
TTTACGAGCGATGGTTGGTTACGACGACCAAAACACTGTCCTCTTACCAC
CACGCGAGCCTGGTTCTCTGTTACCCAAACAACTTCTCGATCATTATGAA
CGAACCAATCTGAATAACCaagacaacaacaacaataacaacatGATGAG
TTCATTCGTGGAAGATGTCCAACCGTTAACCAGCGATCCAGTTCGCAGCA
ACATCACTCTTTCTTCCAACAACCTTGCCAATAATGTCATTAACGAACAA
TCAAACGAGCAAACTCAAACGGACGTCAAGAAAAGTGAAGAAGCTATGGA
GGAGCAAACAACAAAAGCAGAAGAGAACAAGGATAATGAAGGTTGAATGC
CATTACATTTGAAGAAGAAGTTGAGAAAGAACAAAAACAAGATACGAACT
TTCGAAATCATGCCGCCCTCAGGAACCCTTTTACCCGCTCAAAAGATCAA
cattcaaatcaaatttatgcCTTCCGAAGAGGTGAGTTATATGGAGAAGT
TGCAAATAGAAGTGGCACAAAGCACTCAAGAGTTGTCCGTTACGTGCAGA
GGTCAAGGTTTGGAGCCACAAATCGAGTTCGAGAATTCATTGCTTCAATT
TGGTCCCATTCTCCCTTACACTGGGAAAGATGAGGTGTCGGTCAAAGTCA
CCAATCCTTGCGCATTTCCCATCGAATTTTATTCATTGGAGTTTGACAAA
CAGTATGTTGAGGAGGAGAAGGTTTTACGAGCGATGGTTGGTTACGACGA
CCAAAACACTGTCCTCTTACCACCACGCGAGCCTGGTTCTCTGTTACCCA
AACAACTTCTCGATCATTATGAACGAACCAATCTGAATAACCaagacaac
aacaacaataacaacatGATGAGTTCATTCGTGGAAGATGTCCAACCGTT
AACCAGCGATCCAGTTCGCAGCAACATCACTCTTTCTTCCAACAACCTTG
CCAATAATGTCATTAACGAACAATCAAACGAGCAAACTCAAACGGACGTC
AAGAAAAGTGAAGAAGCTATGGAGGAGCAAACAACAAAAGCAGAAGAGAA
CAAGGATAATGAAGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044431-exon-sc0005562-1491911889:9..302 | TCONS_00044431-exon-sc0005562-1491911889:9..302 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1510915933:9..302 | TCONS_00044431-exon-sc0005562-1510915933:9..302 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1575043694:9..302 | TCONS_00044431-exon-sc0005562-1575043694:9..302 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1491911889:456..695 | TCONS_00044431-exon-sc0005562-1491911889:456..695 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1510915933:456..695 | TCONS_00044431-exon-sc0005562-1510915933:456..695 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1575043694:456..695 | TCONS_00044431-exon-sc0005562-1575043694:456..695 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1491911889:3766..4177 | TCONS_00044431-exon-sc0005562-1491911889:3766..4177 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1510915933:3766..4177 | TCONS_00044431-exon-sc0005562-1510915933:3766..4177 | Clytia hemisphaerica | exon |
| TCONS_00044431-exon-sc0005562-1575043694:3766..4177 | TCONS_00044431-exon-sc0005562-1575043694:3766..4177 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0005562 | supercontig | sc0005562:9..4177 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013783 | Ig-like_fold |
Blast
BLAST of TCONS_00044431 vs. Swiss-Prot (Human)
Match: HYDIN (Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=3) HSP 1 Score: 168.703 bits (426), Expect = 1.478e-45 Identity = 88/163 (53.99%), Postives = 115/163 (70.55%), Query Frame = 1
Query: 151 DKHMPLHXXXXXXXXXX-XIRTFEIMPPSGTLLPAQKINIQIKFMPSEEVSYMEKLQIEVAQSTQELSVTCRGQGLEPQIEFENSLLQFGPILPYTGKDEVSVKVTNPCAFPIEFYSLEFDKQYVEEEKVLRAMVGYDDQNTVLLPPREPGSLLPKQLLDHYE 636
+KHMP +L++KLR K R FEI P SG L P +K N+Q+KFMP EE Y + L ++AQS Q+L++ RGQGLEP++EF S+L GP+L DE V V NPC FPIEFYSLEFD+QY+ EEK+LR + GYD NT+LLPPR PG LP +L ++++
Sbjct: 1745 EKHMPKYLRQKLRAELKPKTRIFEIQPISGVLDPGEKSNVQVKFMPKEEKFYSQTLVFQIAQSAQKLTLLARGQGLEPRLEFSPSVLDLGPLLLCAPGDEAEVIVKNPCNFPIEFYSLEFDQQYLIEEKILRKLKGYDSYNTLLLPPRNPGEKLPPELYEYFK 1907
The following BLAST results are available for this feature:
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