TCONS_00044431-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00044431-protein
Unique NameTCONS_00044431-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00044431-protein ID=TCONS_00044431-protein|Name=TCONS_00044431-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MPLHLKKKLRKNKNKIRTFEIMPPSGTLLPAQKINIQIKFMPSEEVSYME
KLQIEVAQSTQELSVTCRGQGLEPQIEFENSLLQFGPILPYTGKDEVSVK
VTNPCAFPIEFYSLEFDKQYVEEEKVLRAMVGYDDQNTVLLPPREPGSLL
PKQLLDHYERTNLNNQDNNNNNNMMSSFVEDVQPLTSDPVRSNITLSSNN
LANNVINEQSNEQTQTDVKKSEEAMEEQTTKAEENKDNEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_028063XLOC_028063Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00044431TCONS_00044431Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 211..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..240
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 73..198
e-value: 1.2E-8
score: 34.7
coord: 1..72
e-value: 3.6E-11
score: 42.8

Blast
[Close]
BLAST of TCONS_00044431-protein vs. Swiss-Prot (Human)
Match: HYDIN (Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 3.453e-51
Identity = 87/160 (54.37%), Postives = 113/160 (70.62%), Query Frame = 0 
Query:    1 MPLHLKKKLRKN-KNKIRTFEIMPPSGTLLPAQKINIQIKFMPSEEVSYMEKLQIEVAQSTQELSVTCRGQGLEPQIEFENSLLQFGPILPYTGKDEVSVKVTNPCAFPIEFYSLEFDKQYVEEEKVLRAMVGYDDQNTVLLPPREPGSLLPKQLLDHYE 159
            MP +L++KLR   K K R FEI P SG L P +K N+Q+KFMP EE  Y + L  ++AQS Q+L++  RGQGLEP++EF  S+L  GP+L     DE  V V NPC FPIEFYSLEFD+QY+ EEK+LR + GYD  NT+LLPPR PG  LP +L ++++
Sbjct: 1748 MPKYLRQKLRAELKPKTRIFEIQPISGVLDPGEKSNVQVKFMPKEEKFYSQTLVFQIAQSAQKLTLLARGQGLEPRLEFSPSVLDLGPLLLCAPGDEAEVIVKNPCNFPIEFYSLEFDQQYLIEEKILRKLKGYDSYNTLLLPPRNPGEKLPPELYEYFK 1907
The following BLAST results are available for this feature:
BLAST of TCONS_00044431-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HYDIN3.453e-5154.38Hydrocephalus-inducing protein homolog OS=Homo sap... [more]
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