TCONS_00044166 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044166
Unique NameTCONS_00044166
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044166 ID=TCONS_00044166|Name=TCONS_00044166|organism=Clytia hemisphaerica|type=transcript|length=498bp
AACCCTACAGTATAACATAATTTTAGACATCGCTAATGCAATACACTGTT
tagtagtgtcgactgcgcacgccagcgcacgcgtccaaacaattttccat
tgttttgattttagcgacagCAGGAAACTTCACTGTCCCTGTAAAAAAGA
ACagccagcagagaaatggtaggtaaaaaacTCCTTTtaaatcataactt
cttttcctttaaatgaatttttgtgaaatcttccggagagatccataaaa
ttatcattgatatcatattcaaatatctaaatcattcccaaaccttccac
agtactaaagtgcgcattgtTACCTACCGCCTCTGCAGTAAAGCACCATG
GAGATAGCGAGACTGCTGAATGGTGTATTCAAAATTCCAGAAAACATCAA
TTACTCACACAAATGAAATAGTTAACAAGCTATAATAACAAATTCACCTA
CACAGATAAATGAAGCTTTTGAAGCCACTGAATCATTTTTAAATAGAA
Run BLAST on NCBI

transcript from alignment at sc0005099:4254..4751

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044166 ID=TCONS_00044166|Name=TCONS_00044166|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at sc0005099:4254..4751 (Clytia hemisphaerica)
TTCTATTTAAAAATGATTCAGTGGCTTCAAAAGCTTCATTTATCTGTGTA
GGTGAATTTGTTATTATAGCTTGTTAACTATTTCATTTGTGTGAGTAATT
GATGTTTTCTGGAATTTTGAATACACCATTCAGCAGTCTCGCTATCTCCA
TGGTGCTTTACTGCAGAGGCGGTAGGTAacaatgcgcactttagtactgt
ggaaggtttgggaatgatttagatatttgaatatgatatcaatgataatt
ttatggatctctccggaagatttcacaaaaattcatttaaaggaaaagaa
gttatgatttaAAAGGAgttttttacctaccatttctctgctggctGTTC
TTTTTTACAGGGACAGTGAAGTTTCCTGctgtcgctaaaatcaaaacaat
ggaaaattgtttggacgcgtgcgctggcgtgcgcagtcgacactactaAA
CAGTGTATTGCATTAGCGATGTCTAAAATTATGTTATACTGTAGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027812XLOC_027812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044166-exon-sc0005099-1491911889:4254..4751TCONS_00044166-exon-sc0005099-1491911889:4254..4751Clytia hemisphaericaexon
TCONS_00044166-exon-sc0005099-1510915933:4254..4751TCONS_00044166-exon-sc0005099-1510915933:4254..4751Clytia hemisphaericaexon
TCONS_00044166-exon-sc0005099-1575043694:4254..4751TCONS_00044166-exon-sc0005099-1575043694:4254..4751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005099supercontigsc0005099:4254..4751 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123542	0	0	0.154369	0	0	0.191831	0.687439	0.225253	0.318938	0.442329	0.46019	0.515056	0.254735	0.0764843	0	0.0983075	0	0	0.384037	0.73069	0.706106	0.143698	0.129117	0	0.139689	0.185757	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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