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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044154 ID=TCONS_00044154|Name=TCONS_00044154|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ccgcttttcatcaactTGGAGATTgagtgtttgtaaacatagaatttttt
ttcataacctttatttggggggtcggaattaggcagggctgtcggattta
ggaccactcacggtactagCTTCACTTGAGGAAATAATAGCGGAGATCTG
CACTTGGGGTTAAAAAACTGTCTGCACTttgcacctgaaaacctcaaatt
ttgcacgCCTGCACTTGACtatttgaacttgaaaaagtcACAAACCACAT
GACCCGAACTTGGTAGCTGACCACATTATTTTTATGCGTTTAAACACAGT
AGCAAGAATGGGCCGAAcagtaccgtgagatcgggtaacttgcatcagtg
agtGGAGGCTAAAACATGCATAGCCTGCCCCCTCAAATGATGACTGACCA
ATtctaagcagcaaaatttcaaaacaaatgaactacgcagctccgcttgc
agctctactctaccatttatgttttgatttaattttgtattttaagaaGC
GCCTtaactgatgcaagttacccgatctcacgcgTCACGTTAACTTAAAT
GTAACTAAAacaaatagatagatagataaatagatagatagataaataCC
TCTAAAACGATATTTTCGATATTCTGAGATGATTTGAGCAGCCTACTGCA
CTGCAGCCTGTATTGTTGGAAATTAGGTCAGTGGTTGGCGCAGGCATAGA
TCTTTTTCCTGTGCTTGTGCTCTTGTTGCAGTCGGGTTGAACTATAAAAG
GTTCTGAAGGTATATTGCTTTGGTATTATATATTATGTTATACGGGTGAG
CTCTCTTTTACTACTATGCAGTCTTATCATATTATCTATTATAGTctcaa
aattgtaaaataaactACAGTTGAACCCCAATGAAGCAATTCGGCTTTGT
TTTAGAATTACGtgtttcccgatcgggaaaaaTACTTAACGGTTTTTTGC
TGACTAAGGTAAATATAAGGGAAGATTGTTCTCCGATCGAGCAAAACTTT
CCGATTCAAATTCAAGCGCCATTTTGCATTTCCATGATTTTCAGCAAGCA
ACTTGAACTTCATCAGACTTCATCAAAAGCAAAAGTTTCCATCGACAgtg
aacaaaagaaaagattgagttcaagaaaacgaaacaatatgattgataaa
attcTAGACTTCCATTTAACACCTGTGAGTATTTATTTGACTttcaatta
caaaaaacaagAGGATTTTATCATTAAGCTTTGTCcagtccagacgatct
caatcgaacggaatcgacgatcgaatcaatcaaaccaaatcgaacgcaat
cgaccca Run BLAST on NCBI protein sequence of TCONS_00044154-protein >TCONS_00044154-protein ID=TCONS_00044154-protein|Name=TCONS_00044154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MKQFGFVLELRVSRSGKILNGFLLTKVNIREDCSPIEQNFPIQIQAPFCI
SMIFSKQLELHQTSSKAKVSIDSEQKKRLSSRKRNNMIDKILDFHLTPVS
IYLTFNYKKQEDFIIKLCPVQTISIERNRRSNQSNQIERNRP Run BLAST on NCBI transcript from alignment at sc0005076:3528..4834 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044154 ID=TCONS_00044154|Name=TCONS_00044154|organism=Clytia hemisphaerica|type=transcript|length=1307bp|location=Sequence derived from alignment at sc0005076:3528..4834 (Clytia hemisphaerica)
tgggtcgattgcgttcgatttggtttgattgattcgatcgtcgattccgt
tcgattgagatcgtctggactgGACAAAGCTTAATGATAAAATCCTcttg
ttttttgtaattgaaAGTCAAATAAATACTCACAGGTGTTAAATGGAAGT
CTAgaattttatcaatcatattgtttcgttttcttgaactcaatcttttc
ttttgttcacTGTCGATGGAAACTTTTGCTTTTGATGAAGTCTGATGAAG
TTCAAGTTGCTTGCTGAAAATCATGGAAATGCAAAATGGCGCTTGAATTT
GAATCGGAAAGTTTTGCTCGATCGGAGAACAATCTTCCCTTATATTTACC
TTAGTCAGCAAAAAACCGTTAAGTAtttttcccgatcgggaaacaCGTAA
TTCTAAAACAAAGCCGAATTGCTTCATTGGGGTTCAACTGTagtttattt
tacaattttgagACTATAATAGATAATATGATAAGACTGCATAGTAGTAA
AAGAGAGCTCACCCGTATAACATAATATATAATACCAAAGCAATATACCT
TCAGAACCTTTTATAGTTCAACCCGACTGCAACAAGAGCACAAGCACAGG
AAAAAGATCTATGCCTGCGCCAACCACTGACCTAATTTCCAACAATACAG
GCTGCAGTGCAGTAGGCTGCTCAAATCATCTCAGAATATCGAAAATATCG
TTTTAGAGGtatttatctatctatctatttatctatctatctatttgtTT
TAGTTACATTTAAGTTAACGTGAcgcgtgagatcgggtaacttgcatcag
ttaAGGCGCttcttaaaatacaaaattaaatcaaaacataaatggtagag
tagagctgcaagcggagctgcgtagttcatttgttttgaaattttgctgc
ttagaATTGGTCAGTCATCATTTGAGGGGGCAGGCTATGCATGTTTTAGC
CTCCactcactgatgcaagttacccgatctcacggtactgTTCGGCCCAT
TCTTGCTACTGTGTTTAAACGCATAAAAATAATGTGGTCAGCTACCAAGT
TCGGGTCATGTGGTTTGTgactttttcaagttcaaataGTCAAGTGCAGG
cgtgcaaaatttgaggttttcaggtgcaaAGTGCAGACAGTTTTTTAACC
CCAAGTGCAGATCTCCGCTATTATTTCCTCAAGTGAAGctagtaccgtga
gtggtcctaaatccgacagccctgcctaattccgaccccccaaataaagg
ttatgaaaaaaaattctatgtttacaaacactcAATCTCCAagttgatga
aaagcgg Coding sequence (CDS) from alignment at sc0005076:3528..4834 >TCONS_00044154 ID=TCONS_00044154|Name=TCONS_00044154|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0005076:3528..4834 (Clytia hemisphaerica)
gggtcgattgcgttcgatttggtttgattgattcgatcgtcgattccgtt
cgattgagatcgtctggactgGACAAAGCTTAATGATAAAATCCTcttgt
tttttgtaattgaaAGTCAAATAAATACTCACAGGTGTTAAATGGAAGTC
TAgaattttatcaatcatattgtttcgttttcttgaactcaatcttttct
tttgttcacTGTCGATGGAAACTTTTGCTTTTGATGAAGTCTGATGAAGT
TCAAGTTGCTTGCTGAAAATCATGGAAATGCAAAATGGCGCTTGAATTTG
AATCGGAAAGTTTTGCTCGATCGGAGAACAATCTTCCCTTATATTTACCT
TAGTCAGCAAAAAACCGTTAAGTAtttttcccgatcgggaaacaCGTAAT
TCTAAAACAAAGCCGAATTGCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044154-exon-sc0005076-1491911889:3528..4834 | TCONS_00044154-exon-sc0005076-1491911889:3528..4834 | Clytia hemisphaerica | exon |
| TCONS_00044154-exon-sc0005076-1510915933:3528..4834 | TCONS_00044154-exon-sc0005076-1510915933:3528..4834 | Clytia hemisphaerica | exon |
| TCONS_00044154-exon-sc0005076-1575043694:3528..4834 | TCONS_00044154-exon-sc0005076-1575043694:3528..4834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005076 | supercontig | sc0005076:3528..4834 . |
Blast
The following BLAST results are available for this feature:
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