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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043984 ID=TCONS_00043984|Name=TCONS_00043984|organism=Clytia hemisphaerica|type=transcript|length=1004bp
TCTCTTTTTGTCAATGAGAACTCTTCTGACTTGATGGGGAGTGACGACAG
CCATGCTGATGCACCGTGTGCACTGGCGATTTCGATTGCTCTCGGTTCCA
TTGGTGATGAATTTATGAATTTAATTTCAAGAGTTCGAGTTTTCTCTTGT
TGAACGACAGTTTTGATTCGGTATTTGGAATACTGGTTTCGGTTGATGTA
ATGATGACTTCGTTCTGGTTTACGATGTTACGAACAAGATTCTGAGTGAC
TTTGATAGATTGTTGAAATTCCAGATCGCACATCTCGGTGACATTGATTA
TTGCCAAGCCACCCATCTTGACAGGCAGAGAAAGAAGCTGTCTCTCATGA
TCATTACAGGTTCTTCCTTCACATAGAGCGTGGATAAAATGGTGTCGAGT
GATATTTTCTAAAGGTTGCAGCTCTTCTTTGATGTTTGGGATGGTTCGGT
TGACATAGTTGAACTTATGTGCGAACCCTGCTGTAAAAGCACAGTATGCT
GATTTGGGGTATGCTTTAGCGATCTCGGAAAGGACTTTCAGTTGCTTGAC
CCAATCTTGAATGAACTTCTTAACGTACTCGGATTTGAATGTTTCAGTTC
CAACAACTGCACCAAGGTGACGCTTTCCgtcttttgtaattttgatgttG
GTATCTTTAAATATGATTTTAGCTAGTTCATTTTTGTCCGGTTTTACGAC
GAGCCAGGATTTTGATCCTTTTGGGAAGTATCCGAGGTATGGACCGACGT
TTTGAAGCATTGTCCACCATTTCAGGAGGGATTTCAATTTACCAGCTGCT
GTTAGATCGTCAGCATAAGCAACCTGGTTGATGTCACTCGAATTGATGTT
TTCCAGTAAAGGGACTAAAGCTAGTGCGTAGTTGGGCATTGCTACCTGAT
CCCCTTGAGCGGTTCCTTCTGAAGAAATGATTTCAAACCCACCGGTTGTG
GTGTCTAAtctcgtgaagtcattgcagtggtgcatatcatgaattacaaC
ACCT Run BLAST on NCBI protein sequence of TCONS_00043984-protein >TCONS_00043984-protein ID=TCONS_00043984-protein|Name=TCONS_00043984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
GVVIHDMHHCNDFTRLDTTTGGFEIISSEGTAQGDQVAMPNYALALVPLL
ENINSSDINQVAYADDLTAAGKLKSLLKWWTMLQNVGPYLGYFPKGSKSW
LVVKPDKNELAKIIFKDTNIKITKDGKRHLGAVVGTETFKSEYVKKFIQD
WVKQLKVLSEIAKAYPKSAYCAFTAGFAHKFNYVNRTIPNIKEELQPLEN
ITRHHFIHALCEGRTCNDHERQLLSLPVKMGGLAIINVTEMCDLEFQQSI
KVTQNLVRNIVNQNEVIITSTETSIPNTESKLSFNKRKLELLKLNS Run BLAST on NCBI transcript from alignment at sc0004808:2..1005 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043984 ID=TCONS_00043984|Name=TCONS_00043984|organism=Clytia hemisphaerica|type=transcript|length=1004bp|location=Sequence derived from alignment at sc0004808:2..1005 (Clytia hemisphaerica)
AGGTGttgtaattcatgatatgcaccactgcaatgacttcacgagaTTAG
ACACCACAACCGGTGGGTTTGAAATCATTTCTTCAGAAGGAACCGCTCAA
GGGGATCAGGTAGCAATGCCCAACTACGCACTAGCTTTAGTCCCTTTACT
GGAAAACATCAATTCGAGTGACATCAACCAGGTTGCTTATGCTGACGATC
TAACAGCAGCTGGTAAATTGAAATCCCTCCTGAAATGGTGGACAATGCTT
CAAAACGTCGGTCCATACCTCGGATACTTCCCAAAAGGATCAAAATCCTG
GCTCGTCGTAAAACCGGACAAAAATGAACTAGCTAAAATCATATTTAAAG
ATACCaacatcaaaattacaaaagacGGAAAGCGTCACCTTGGTGCAGTT
GTTGGAACTGAAACATTCAAATCCGAGTACGTTAAGAAGTTCATTCAAGA
TTGGGTCAAGCAACTGAAAGTCCTTTCCGAGATCGCTAAAGCATACCCCA
AATCAGCATACTGTGCTTTTACAGCAGGGTTCGCACATAAGTTCAACTAT
GTCAACCGAACCATCCCAAACATCAAAGAAGAGCTGCAACCTTTAGAAAA
TATCACTCGACACCATTTTATCCACGCTCTATGTGAAGGAAGAACCTGTA
ATGATCATGAGAGACAGCTTCTTTCTCTGCCTGTCAAGATGGGTGGCTTG
GCAATAATCAATGTCACCGAGATGTGCGATCTGGAATTTCAACAATCTAT
CAAAGTCACTCAGAATCTTGTTCGTAACATCGTAAACCAGAACGAAGTCA
TCATTACATCAACCGAAACCAGTATTCCAAATACCGAATCAAAACTGTCG
TTCAACAAGAGAAAACTCGAACTCTTGAAATTAAATTCATAAATTCATCA
CCAATGGAACCGAGAGCAATCGAAATCGCCAGTGCACACGGTGCATCAGC
ATGGCTGTCGTCACTCCCCATCAAGTCAGAAGAGTTCTCATTGACAAAAA
GAGA Coding sequence (CDS) from alignment at sc0004808:2..1005 >TCONS_00043984 ID=TCONS_00043984|Name=TCONS_00043984|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0004808:2..1005 (Clytia hemisphaerica)
GGTGttgtaattcatgatatgcaccactgcaatgacttcacgagaTTAGA
CACCACAACCGGTGGGTTTGAAATCATTTCTTCAGAAGGAACCGCTCAAG
GGGATCAGGTAGCAATGCCCAACTACGCACTAGCTTTAGTCCCTTTACTG
GAAAACATCAATTCGAGTGACATCAACCAGGTTGCTTATGCTGACGATCT
AACAGCAGCTGGTAAATTGAAATCCCTCCTGAAATGGTGGACAATGCTTC
AAAACGTCGGTCCATACCTCGGATACTTCCCAAAAGGATCAAAATCCTGG
CTCGTCGTAAAACCGGACAAAAATGAACTAGCTAAAATCATATTTAAAGA
TACCaacatcaaaattacaaaagacGGAAAGCGTCACCTTGGTGCAGTTG
TTGGAACTGAAACATTCAAATCCGAGTACGTTAAGAAGTTCATTCAAGAT
TGGGTCAAGCAACTGAAAGTCCTTTCCGAGATCGCTAAAGCATACCCCAA
ATCAGCATACTGTGCTTTTACAGCAGGGTTCGCACATAAGTTCAACTATG
TCAACCGAACCATCCCAAACATCAAAGAAGAGCTGCAACCTTTAGAAAAT
ATCACTCGACACCATTTTATCCACGCTCTATGTGAAGGAAGAACCTGTAA
TGATCATGAGAGACAGCTTCTTTCTCTGCCTGTCAAGATGGGTGGCTTGG
CAATAATCAATGTCACCGAGATGTGCGATCTGGAATTTCAACAATCTATC
AAAGTCACTCAGAATCTTGTTCGTAACATCGTAAACCAGAACGAAGTCAT
CATTACATCAACCGAAACCAGTATTCCAAATACCGAATCAAAACTGTCGT
TCAACAAGAGAAAACTCGAACTCTTGAAATTAAATTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043984-exon-sc0004808-1491911889:2..1005 | TCONS_00043984-exon-sc0004808-1491911889:2..1005 | Clytia hemisphaerica | exon |
| TCONS_00043984-exon-sc0004808-1510915933:2..1005 | TCONS_00043984-exon-sc0004808-1510915933:2..1005 | Clytia hemisphaerica | exon |
| TCONS_00043984-exon-sc0004808-1575043694:2..1005 | TCONS_00043984-exon-sc0004808-1575043694:2..1005 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004808 | supercontig | sc0004808:2..1005 . |
Blast
The following BLAST results are available for this feature:
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