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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043758 ID=TCONS_00043758|Name=TCONS_00043758|organism=Clytia hemisphaerica|type=transcript|length=1561bp
AGTGACTTATGGTAATTACTCAATTTTATACCAATCTATTTCGATTTGGA
ACGAAATACAAAAATACCTAGCCTATGACGACATCTCTACACTACTATTG
GATCGTCTCAAAGATTTAACAAGATTATATTTCCTCTCTTCATATACTTA
ATTTTTACGATTTTCGTGTTTCGTTctgaatttttcatttctttattgct
atttcataaaaaatttactttcaatGTATGTATCCTAGTAAGATCTTAGA
AACTATTTTTTCTTGAAACAGTAGCGTGCagccacctccttagtttagct
ttatgtctatgagtgtggtcgctcgtctcgcttattaagaaaaataaatt
cattactTCTAAATTATTTGGTGCAGTCTCTTTTCCAGTGACCTTGTTCC
CCACATTTGAGGCAGTATTCTTTTGGTTTGGCTCTTTTGTTGTTGATTGT
GACTCGAAAGTTAAGCCTCCCTGAACTAGGCCTCCCCGAGTTCTGACCTA
TATCATCTCTCCTAGTGATAGTTGAAGATGGTTGAGTTCTCCTCTTCTTA
TCCTTTTGTTTCTGCAAGGCTCTCTTCTCGGCTGCTCTAATCTTCTTCTT
ATCAGCGGAGTCGCTTGCGACGCTGTCAGACTCGTACTCCAGAACGTTCC
CCCACCCAGCTGGAGACTTATCTGCCATTCTGATTAATTTATTACGAGCA
TCAATGTCCCTGATTACTTCTTTGAGTAGGCTCGAGGACCTGTTTACTGA
GCCATCCTGCACTAAATCAAGCACGTCTTCCAACTTATCTCTAACAGTag
tattaaattaaaattgcttTGCATTTGATTTACTTCTAAAATCGTTTCTC
TTTCTCTTGATACTGCTCGAAGTTTTAAGTTCATTCCTCATGTCCTTCTT
CAAGGAGGAGAATTTGTCTTCGAAATATTTGAATAATGCTTCCATGCCTT
CTTGCGCCATGTTGTCCGCACTCTAAGCTCATCTATAGACGTGTGAGTAA
TCTCAAAATCCTGCCGCCCTTCGTATCACGTGACTAAGAAGCGCCGAACg
aacaaaaataaattcataaatGATGCCTTCACTCCACCCCACCTGTTGCA
CCAGCTACTATGCCAACATCAAGCCTCTCAAGGAGATTAATTAAATCCAG
AGAAATACTTGTAATCAGACAGTATTCATGcttgaaatggaaaaaaatca
aCAGCACAAGACAACAAAACACCATTTATACATCACATTTCGGACGAATC
AACACTAGAAATGGTATTTGAACTGAGAAAGAAGTCATTGGAGCACTCAA
TTCaaccaaaaattaagaaagacCACAACTCAAAACCCCAAGCTTCAAGC
CAGGAAACGTTCGAATGTTTAGAACGTGACAGCCTCGTTTTCATTCGAAA
ACCATAGAATCGGACTAATGGTCATGTCCTGGAACCACCATTGGCCCCAG
CGACTCAAAACTTGGCACTGGCCTTCTCTACGACCTCCAATGGAACCCAA
CTAATTGTAATAGCCTGGACCCACTATTGGTCCCATCGGCCCAAAACTTG
GCACTGGCATT Run BLAST on NCBI protein sequence of TCONS_00043758-protein >TCONS_00043758-protein ID=TCONS_00043758-protein|Name=TCONS_00043758-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MADKSPAGWGNVLEYESDSVASDSADKKKIRAAEKRALQKQKDKKRRTQP
SSTITRRDDIGQNSGRPSSGRLNFRVTINNKRAKPKEYCLKCGEQGHWKR
DCTK Run BLAST on NCBI transcript from alignment at sc0004537:1914..3474 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043758 ID=TCONS_00043758|Name=TCONS_00043758|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at sc0004537:1914..3474 (Clytia hemisphaerica)
AATGCCAGTGCCAAGTTTTGGGCCGATGGGACCAATAGTGGGTCCAGGCT
ATTACAATTAGTTGGGTTCCATTGGAGGTCGTAGAGAAGGCCAGTGCCAA
GTTTTGAGTCGCTGGGGCCAATGGTGGTTCCAGGACATGACCATTAGTCC
GATTCTATGGTTTTCGAATGAAAACGAGGCTGTCACGTTCTAAACATTCG
AACGTTTCCTGGCTTGAAGCTTGGGGTTTTGAGTTGTGgtctttcttaat
ttttggttGAATTGAGTGCTCCAATGACTTCTTTCTCAGTTCAAATACCA
TTTCTAGTGTTGATTCGTCCGAAATGTGATGTATAAATGGTGTTTTGTTG
TCTTGTGCTGttgatttttttccatttcaagCATGAATACTGTCTGATTA
CAAGTATTTCTCTGGATTTAATTAATCTCCTTGAGAGGCTTGATGTTGGC
ATAGTAGCTGGTGCAACAGGTGGGGTGGAGTGAAGGCATCatttatgaat
ttatttttgttcGTTCGGCGCTTCTTAGTCACGTGATACGAAGGGCGGCA
GGATTTTGAGATTACTCACACGTCTATAGATGAGCTTAGAGTGCGGACAA
CATGGCGCAAGAAGGCATGGAAGCATTATTCAAATATTTCGAAGACAAAT
TCTCCTCCTTGAAGAAGGACATGAGGAATGAACTTAAAACTTCGAGCAGT
ATCAAGAGAAAGAGAAACGATTTTAGAAGTAAATCAAATGCAaagcaatt
ttaatttaatactACTGTTAGAGATAAGTTGGAAGACGTGCTTGATTTAG
TGCAGGATGGCTCAGTAAACAGGTCCTCGAGCCTACTCAAAGAAGTAATC
AGGGACATTGATGCTCGTAATAAATTAATCAGAATGGCAGATAAGTCTCC
AGCTGGGTGGGGGAACGTTCTGGAGTACGAGTCTGACAGCGTCGCAAGCG
ACTCCGCTGATAAGAAGAAGATTAGAGCAGCCGAGAAGAGAGCCTTGCAG
AAACAAAAGGATAAGAAGAGGAGAACTCAACCATCTTCAACTATCACTAG
GAGAGATGATATAGGTCAGAACTCGGGGAGGCCTAGTTCAGGGAGGCTTA
ACTTTCGAGTCACAATCAACAACAAAAGAGCCAAACCAAAAGAATACTGC
CTCAAATGTGGGGAACAAGGTCACTGGAAAAGAGACTGCACCAAATAATT
TAGAagtaatgaatttatttttcttaataagcgagacgagcgaccacact
catagacataaagctaaactaaggaggtggctGCACGCTACTGTTTCAAG
AAAAAATAGTTTCTAAGATCTTACTAGGATACATACattgaaagtaaatt
ttttatgaaatagcaataaagaaatgaaaaattcagAACGAAACACGAAA
ATCGTAAAAATTAAGTATATGAAGAGAGGAAATATAATCTTGTTAAATCT
TTGAGACGATCCAATAGTAGTGTAGAGATGTCGTCATAGGCTAGGTATTT
TTGTATTTCGTTCCAAATCGAAATAGATTGGTATAAAATTGAGTAATTAC
CATAAGTCACT Coding sequence (CDS) from alignment at sc0004537:1914..3474 >TCONS_00043758 ID=TCONS_00043758|Name=TCONS_00043758|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0004537:1914..3474 (Clytia hemisphaerica)
ATGGCAGATAAGTCTCCAGCTGGGTGGGGGAACGTTCTGGAGTACGAGTC
TGACAGCGTCGCAAGCGACTCCGCTGATAAGAAGAAGATTAGAGCAGCCG
AGAAGAGAGCCTTGCAGAAACAAAAGGATAAGAAGAGGAGAACTCAACCA
TCTTCAACTATCACTAGGAGAGATGATATAGGTCAGAACTCGGGGAGGCC
TAGTTCAGGGAGGCTTAACTTTCGAGTCACAATCAACAACAAAAGAGCCA
AACCAAAAGAATACTGCCTCAAATGTGGGGAACAAGGTCACTGGAAAAGA
GACTGCACCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043758-exon-sc0004537-1491911889:1914..3474 | TCONS_00043758-exon-sc0004537-1491911889:1914..3474 | Clytia hemisphaerica | exon |
| TCONS_00043758-exon-sc0004537-1510915933:1914..3474 | TCONS_00043758-exon-sc0004537-1510915933:1914..3474 | Clytia hemisphaerica | exon |
| TCONS_00043758-exon-sc0004537-1575043694:1914..3474 | TCONS_00043758-exon-sc0004537-1575043694:1914..3474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004537 | supercontig | sc0004537:1914..3474 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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