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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043736 ID=TCONS_00043736|Name=TCONS_00043736|organism=Clytia hemisphaerica|type=transcript|length=1015bp
GTTAGCGACTCAGATATCATGCAACAtttgttgacgtcaaaccaaatgtt
tcatttttccgtgaactttctatgtatgctaaagcgttctggtttttact
aaaagaaagcccgtgatcttagctttccagcggcatacaacactgtggac
acgggctagacggcaaattggtaaattGCCGAACgtttttgcaacatttc
aagATTGTTTCACGAcgggagaaaaattttttgcaactatcgatgaacaa
atgtctctggaaatggaggaattTGTAgttggaggctgaaactttgtatg
tttatcagaaaaagggtgaggcggcaatcaaaaatatgttccattcgggt
cctaaaacatcttcaaatccagtcggtcgcATTAGGAACTCTATTTTTCT
TGATCGTGTTAACCCTGCTGAAGTCTTACTAACAATTAATTCTTTATCCT
TTAACAAATCATCTGGCCCTTATAGCATTTCCCCAAAAATTCTTTGTCTT
CTAAAGTTTGACCTCTCTGGAcccctttcttttctttttaacctttcatt
TGAATCTGGTTGTTTTCCCTCAATGCTTAAACTCTCGAAAGTTATTCCCG
TNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTGGAcccctttcttttc
tttttaacctttcattTGAATCTGGTTGTTTTCCCTCAATGCTTAAACTC
TCGAAAGTTATTcccgttttcaaaaacaaagttCTTGAAATATCCAATTA
TCGCCCAGTATCGCCCTATATCTCTTCTTTCCAACATAGAGAAAATTCTT
GAGAAACTTATGTACTCTCGTCTTATTACTTTCTTAGATTCTCATCGAGT
ATTTTTTGAGCGCCAGTTTGGTTTTCGTAGATCTCACTCAACCATCCATA
CCTTACTTAATATTGTTGAGCATTTTCGGAAATCTCTTGATGATGGTAAC
TTTGTGTGtggtgtttttgttgatttgcaaAAGGCTTTTGACACTGTTGA
TCATTCTATTCTAAT Run BLAST on NCBI protein sequence of TCONS_00043736-protein >TCONS_00043736-protein ID=TCONS_00043736-protein|Name=TCONS_00043736-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MFHSGPKTSSNPVGRIRNSIFLDRVNPAEVLLTINSLSFNKSSGPYSISP
KILCLLKFDLSGPLSFLFNLSFESGCFPSMLKLSKVIPXXXXXXXXXXSL
DPFLFFLTFHLNLVVFPQCLNSRKLFPFSKTKFLKYPIIAQYRPISLLSN
IEKILEKLMYSRLITFLDSHRVFFERQFGFRRSHSTIHTLLNIVEHFRKS
LDDGNFVCGVFVDLQKAFDTVDHSIL Run BLAST on NCBI transcript from alignment at sc0004518:1..1015 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043736 ID=TCONS_00043736|Name=TCONS_00043736|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at sc0004518:1..1015 (Clytia hemisphaerica)
ATTAGAATAGAATGATCAACAGTGTCAAAAGCCTTttgcaaatcaacaaa
aacaccaCACACAAAGTTACCATCATCAAGAGATTTCCGAAAATGCTCAA
CAATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAAAC
TGGCGCTCAAAAAATACTCGATGAGAATCTAAGAAAGTAATAAGACGAGA
GTACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATATAG
GGCGATACTGGGCGATAATTGGATATTTCAAGaactttgtttttgaaaac
gggAATAACTTTCGAGAGTTTAAGCATTGAGGGAAAACAACCAGATTCAa
atgaaaggttaaaaagaaaagaaaggggTCCAGAGAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNACGGGAATAACTTTCGAGAGTTTAAGCATTGAGGGA
AAACAACCAGATTCAaatgaaaggttaaaaagaaaagaaaggggTCCAGA
GAGGTCAAACTTTAGAAGACAAAGAATTTTTGGGGAAATGCTATAAGGGC
CAGATGATTTGTTAAAGGATAAAGAATTAATTGTTAGTAAGACTTCAGCA
GGGTTAACACGATCAAGAAAAATAGAGTTCCTAATgcgaccgactggatt
tgaagatgttttaggacccgaatggaacatatttttgattgccgcctcac
cctttttctgataaacatacaaagtttcagcctccaacTACAaattcctc
catttccagagacatttgttcatcgatagttgcaaaaaatttttctcccg
TCGTGAAACAATcttgaaatgttgcaaaaacGTTCGGCaatttaccaatt
tgccgtctagcccgtgtccacagtgttgtatgccgctggaaagctaagat
cacgggctttcttttagtaaaaaccagaacgctttagcatacatagaaag
ttcacggaaaaatgaaacatttggtttgacgtcaacaaaTGTTGCATGAT
ATCTGAGTCGCTAAC Coding sequence (CDS) from alignment at sc0004518:1..1015 >TCONS_00043736 ID=TCONS_00043736|Name=TCONS_00043736|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0004518:1..1015 (Clytia hemisphaerica)
TAGAATAGAATGATCAACAGTGTCAAAAGCCTTttgcaaatcaacaaaaa
caccaCACACAAAGTTACCATCATCAAGAGATTTCCGAAAATGCTCAACA
ATATTAAGTAAGGTATGGATGGTTGAGTGAGATCTACGAAAACCAAACTG
GCGCTCAAAAAATACTCGATGAGAATCTAAGAAAGTAATAAGACGAGAGT
ACATAAGTTTCTCAAGAATTTTCTCTATGTTGGAAAGAAGAGATATAGGG
CGATACTGGGCGATAATTGGATATTTCAAGaactttgtttttgaaaacgg
gAATAACTTTCGAGAGTTTAAGCATTGAGGGAAAACAACCAGATTCAaat
gaaaggttaaaaagaaaagaaaggggTCCAGAGAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNACGGGAATAACTTTCGAGAGTTTAAGCATTGAGGGAAA
ACAACCAGATTCAaatgaaaggttaaaaagaaaagaaaggggTCCAGAGA
GGTCAAACTTTAGAAGACAAAGAATTTTTGGGGAAATGCTATAAGGGCCA
GATGATTTGTTAAAGGATAAAGAATTAATTGTTAGTAAGACTTCAGCAGG
GTTAACACGATCAAGAAAAATAGAGTTCCTAATgcgaccgactggatttg
aagatgttttaggacccgaatggaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043736-exon-sc0004518-1491911889:1..1015 | TCONS_00043736-exon-sc0004518-1491911889:1..1015 | Clytia hemisphaerica | exon |
| TCONS_00043736-exon-sc0004518-1510915933:1..1015 | TCONS_00043736-exon-sc0004518-1510915933:1..1015 | Clytia hemisphaerica | exon |
| TCONS_00043736-exon-sc0004518-1575043694:1..1015 | TCONS_00043736-exon-sc0004518-1575043694:1..1015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004518 | supercontig | sc0004518:1..1015 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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