TCONS_00043559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043559
Unique NameTCONS_00043559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043559 ID=TCONS_00043559|Name=TCONS_00043559|organism=Clytia hemisphaerica|type=transcript|length=443bp
TTCGTAACAGACTATTCCTAAATACATTCTATTTCATCTTTTCAGaatat
tttgtatttgattGGTGAGACCTTCTTGGAGTTTGTGGAGAAGTTTAAAC
TTTACAGCACATTTTGTTCCTGTCATTCTCGAGCTGTCAAACTGTTGGAA
TTGAATTCGAACGATGCTTTGAGGGCATTTTTGATAGCAAGAAATCCTAA
ACAACAACATACAGGAACAGTGGAATCCTACTTGATCACCCCAATTCAGC
GTATTCTGCGTTACCCACTGCTGATGAAGACCATGCTGAAACTCATGGAC
AAAGAGAGTGATGAATACAACTGTCTTTACAACGCCTTACGTAAGGTGGA
GGAGGTGGCTGACTACATCAACGAAATGCAACGTATCAGTGAAACATACA
CTCCTCTCTTTCAAAATCTTTGCAAACAATATCCAGAAGTCGA
Run BLAST on NCBI

transcript from alignment at sc0004345:6030..7229-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043559 ID=TCONS_00043559|Name=TCONS_00043559|organism=Clytia hemisphaerica|type=transcript|length=1200bp|location=Sequence derived from alignment at sc0004345:6030..7229- (Clytia hemisphaerica)
TTCGTAACAGACTATTCCTAAATACATTCTATTTCATCTTTTCAGAATAT
TTTGTATTTGATTGGTGAGACCTTCTTGGAGTTTGTGGAGAAGTTTAAAC
TTTACAGCACATTTTGTTCCTGTCATTCTCGAGCTGTCAAACTGTTGGAA
TTGAGTAAGAGCTATTCTTTCTTTAGTTTAGGGCACATTTCTACCGAGTA
TTAGAATTCCTCTAACAGAAACCAATGATACTTTTGAAGTGACTGGCTGA
TCTCAACGTGACTTTGACGAGTTAAGCGCTTCGCACATCGTAAACTGATT
TTAGTATAATATAGTTTCCATGATTCAAAACCATGACAAATTTCTTGAAC
TTCAATGTGTCAGATGGCCCAAAGTACTGGTTCCCGCAAACCTCCAAAAA
TGGGGGGGGTGGAGGGGGCTGGGAAATTTTGAATTTTCTGGGGGGTGAGG
TAGAAGAGGTCACCTGCTTTTTCCTGGGGAGGGCTGAGACCCCTGAGTAT
AAAATGAACCCTATGTATAAAATAAAAGTATTTCAGAGATAGGGTCTCTT
TAGAACAGACAAAAGTATTCAATATTTTCTTTCCATACTATTGGAATCAA
CTGAGAATATGAATGTAATATTCTTTAGATTCGAACGATGCTTTGAGGGC
ATTTTTGATAGCAAGAAATCCTAAACAACAACATACAGGAACAGTGGAAT
CCTACTTGATCACCCCAATTCAGGTAAACTCTCATTCTTCGCCAAAGAAA
GCCACGTCATACACTGTTTCACCTATAAGTTAAAAAACTTCGATAGGAGA
ATTTAGTCCTCTAAGATGCTTTGCACACCTAGCAAACGTTATTAATCTTG
CGTAACTTAGTTCTACCGTAGCGCTTTGTTAACACCCGATACTGACGTTT
GATCAGTCTCGCTGTAAAAAGAGGCTAACCTCTCATTCTACATCCCCGAA
CGTTCTTCGACTTTCTTCTTCATCCACAGGTTTTGATAGTCTCACTTTCT
TTCTAGCGTATTCTGCGTTACCCACTGCTGATGAAGACCATGCTGAAACT
CATGGACAAAGAGAGTGATGAATACAACTGTCTTTACAACGCCTTACGTA
AGGTGGAGGAGGTGGCTGACTACATCAACGAAATGCAACGTATCAGTGAA
ACATACACTCCTCTCTTTCAAAATCTTTGCAAACAATATCCAGAAGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027246XLOC_027246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043559-exon-sc0004345-1575043694:7076..7229TCONS_00043559-exon-sc0004345-1575043694:7076..7229Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1575043694:6507..6601TCONS_00043559-exon-sc0004345-1575043694:6507..6601Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1575043694:6030..6223TCONS_00043559-exon-sc0004345-1575043694:6030..6223Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1510915933:7076..7229TCONS_00043559-exon-sc0004345-1510915933:7076..7229Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1510915933:6507..6601TCONS_00043559-exon-sc0004345-1510915933:6507..6601Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1510915933:6030..6223TCONS_00043559-exon-sc0004345-1510915933:6030..6223Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1491911889:7076..7229TCONS_00043559-exon-sc0004345-1491911889:7076..7229Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1491911889:6507..6601TCONS_00043559-exon-sc0004345-1491911889:6507..6601Clytia hemisphaericaexon
TCONS_00043559-exon-sc0004345-1491911889:6030..6223TCONS_00043559-exon-sc0004345-1491911889:6030..6223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004345supercontigsc0004345:6030..7229 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.34062	9.17752	4.8111	6.81002	42.6955	36.4256	30.8297	29.8766	16.2826	24.4589	17.1748	12.1109	3.27142	1.27871	1.73126	4.2012	5.3606	5.35212	1.98074	3.89824	6.9485	6.53346	11.8038	11.8111	15.7908	14.5795	11.6835	7.96988	7.06107	5.41506
Blast
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BLAST of TCONS_00043559 vs. Swiss-Prot (Human)
Match: TIAM1 (T-lymphoma invasion and metastasis-inducing protein 1 OS=Homo sapiens GN=TIAM1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.449e-31
Identity = 62/141 (43.97%), Postives = 97/141 (68.79%), Query Frame = 1 
Query:    1 FVTDYS*IHSISSFQNILYLIGETFLEFVEKFKLYSTFCSCHSRAVKLL-ELNSNDALRAFLIARNPKQQHTGTVESYLITPIQRILRYPXXXXXXXXXXXXESDEYNCLYNALRKVEEVADYINEMQRISETYTPLFQNL 420
             V D   +  +  F+ +L+ +G +FL + ++FKLYS FC+ H++  K+L +  ++ A +AFL A+NPKQQH+ T+ESYLI PIQRIL+YPLL++ +  L D ES+E+  L  A++ + +VA +INEMQ+I E +  +F  L
Sbjct: 1108 LVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPKQQHSSTLESYLIKPIQRILKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQL 1248
The following BLAST results are available for this feature:
BLAST of TCONS_00043559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIAM12.449e-3143.97T-lymphoma invasion and metastasis-inducing protei... [more]
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