TCONS_00043457 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043457
Unique NameTCONS_00043457
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043457 ID=TCONS_00043457|Name=TCONS_00043457|organism=Clytia hemisphaerica|type=transcript|length=365bp
TTCATTTGttgtcaaaatgtttgactCTTTTGTCTTTCTACACTACAGGT
CGTGATGCTGTATCATAACATAAACTCCACGAAACCATTTCTCGTCAATT
AAATCAAGGGTAAGGTAAGGGAATTATCTGCTTGCTATATATGTAGGTat
tatttcaagtttttttttgagcaatgaaatgtttttggcaaagctttctt
ctcaatttttgaCTATTCTGAGATATGATTAAAATGAGTATCCTTGTTTG
TGAATGAATGATGGAGCAATATATATcagatttgtttatttttatacaGG
TTAAATGACTTTATCAAGCACTGAAACTTTACAACTCTCTGCACCATAAG
AAAAAATCCAGATAG
Run BLAST on NCBI

transcript from alignment at sc0004237:1150..1514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043457 ID=TCONS_00043457|Name=TCONS_00043457|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at sc0004237:1150..1514 (Clytia hemisphaerica)
CTATCTGGATTTTTTCTTATGGTGCAGAGAGTTGTAAAGTTTCAGTGCTT
GATAAAGTCATTTAACCtgtataaaaataaacaaatctgATATATATTGC
TCCATCATTCATTCACAAACAAGGATACTCATTTTAATCATATCTCAGAA
TAGtcaaaaattgagaagaaagctttgccaaaaacatttcattgctcaaa
aaaaaacttgaaataatACCTACATATATAGCAAGCAGATAATTCCCTTA
CCTTACCCTTGATTTAATTGACGAGAAATGGTTTCGTGGAGTTTATGTTA
TGATACAGCATCACGACCTGTAGTGTAGAAAGACAAAAGagtcaaacatt
ttgacaaCAAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027153XLOC_027153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043457-exon-sc0004237-1491911889:1150..1514TCONS_00043457-exon-sc0004237-1491911889:1150..1514Clytia hemisphaericaexon
TCONS_00043457-exon-sc0004237-1510915933:1150..1514TCONS_00043457-exon-sc0004237-1510915933:1150..1514Clytia hemisphaericaexon
TCONS_00043457-exon-sc0004237-1575043694:1150..1514TCONS_00043457-exon-sc0004237-1575043694:1150..1514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004237supercontigsc0004237:1150..1514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.682264	0.221772	0	0	1.22676	0.484702	0.349381	0.547457	1.353	1.77794	1.61286	1.81754	0.605003	0.942453	0.924824	0.425663	0.363996	0.355417	0.737905	0	1.70345	2.00124	0.805598	0.989937	0.976689	1.08959	0.661937	1.68561	0.82865	1.03985
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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