TCONS_00043451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043451
Unique NameTCONS_00043451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043451 ID=TCONS_00043451|Name=TCONS_00043451|organism=Clytia hemisphaerica|type=transcript|length=786bp
CTTTATTAGAAAATACCAAATTGGTAAACATGAAATTATCTCTATCTCCA
TCTTTCCTGACTCTAGAAATTTAAAACGATCTTTTAATCTCTTCTGTTGC
TATTTTCCACCTTCCTTTACTGTAGATCTTGACTTAATTAAACTTCTTTT
TCCACCTAACTCAATAGTTGTTGGTGACCTCAATGCCAAACATTCTTCTT
GGGGTAGTACTAAAGATGGCATTAGGGGCTTAGTTTTTagagaacttttt
gataataaTCATATGGAAACATACAATATGCCACCtaattataagaacaa
aaaagggGAATACAAGGAGGTCATTCAACAAATAGTCACCTCTCAAGATA
GATTTTTTCAAATAGAAGACATTTCCTCTCTTCCTAACATGGGTTCTGAT
CATCTCCCAGTTACTTTCTCTGTTTTCGATCCTTTAGCTTCTTGTAAAAA
GactaaaaatattaaactttATCACAAACTTAATCTCGATTCTGTTACAA
CCATTCTTAATAATTTTTCTCTTGAAAAGGTCTTTGGTGTTAAACAAGTA
GAAGACAAAACATCCAATTTAATCTCCttgcttaaccctattattatcag
gctttttcggattttgtattctcaagggggggtgttttccaccagccttg
cataactttcgatctagaaaaggtatggacttgaaattttgcccaAATGT
TCTCTTTCAtgaaaggagttcatagaaaaaaatttgggttgatgacgtca
tcataaaggtgatgacgtcatcacaaagtttcacaa
Run BLAST on NCBI

protein sequence of TCONS_00043451-protein

>TCONS_00043451-protein ID=TCONS_00043451-protein|Name=TCONS_00043451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
FIRKYQIGKHEIISISIFPDSRNLKRSFNLFCCYFPPSFTVDLDLIKLLF
PPNSIVVGDLNAKHSSWGSTKDGIRGLVFRELFDNNHMETYNMPPNYKNK
KGEYKEVIQQIVTSQDRFFQIEDISSLPNMGSDHLPVTFSVFDPLASCKK
TKNIKLYHKLNLDSVTTILNNFSLEKVFGVKQVEDKTSNLISLLNPIIIR
LFRILYSQGGVFSTSLA
Run BLAST on NCBI

transcript from alignment at sc0004233:735..1520

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043451 ID=TCONS_00043451|Name=TCONS_00043451|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0004233:735..1520 (Clytia hemisphaerica)
ttgtgaaactttgtgatgacgtcatcacctttatgatgacgtcatcaacc
caaatttttttctatgaactcctttcaTGAAAGAGAACATTtgggcaaaa
tttcaagtccataccttttctagatcgaaagttatgcaaggctggtggaa
aacacccccccttgagaatacaaaatccgaaaaagcctgataataatagg
gttaagcaaGGAGATTAAATTGGATGTTTTGTCTTCTACTTGTTTAACAC
CAAAGACCTTTTCAAGAGAAAAATTATTAAGAATGGTTGTAACAGAATCG
AGATTAAGTTTGTGATaaagtttaatatttttagtCTTTTTACAAGAAGC
TAAAGGATCGAAAACAGAGAAAGTAACTGGGAGATGATCAGAACCCATGT
TAGGAAGAGAGGAAATGTCTTCTATTTGAAAAAATCTATCTTGAGAGGTG
ACTATTTGTTGAATGACCTCCTTGTATTCcccttttttgttcttataatt
aGGTGGCATATTGTATGTTTCCATATGAttattatcaaaaagttctctAA
AAACTAAGCCCCTAATGCCATCTTTAGTACTACCCCAAGAAGAATGTTTG
GCATTGAGGTCACCAACAACTATTGAGTTAGGTGGAAAAAGAAGTTTAAT
TAAGTCAAGATCTACAGTAAAGGAAGGTGGAAAATAGCAACAGAAGAGAT
TAAAAGATCGTTTTAAATTTCTAGAGTCAGGAAAGATGGAGATAGAGATA
ATTTCATGTTTACCAATTTGGTATTTTCTAATAAAG

Coding sequence (CDS) from alignment at sc0004233:735..1520

>TCONS_00043451 ID=TCONS_00043451|Name=TCONS_00043451|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0004233:735..1520 (Clytia hemisphaerica)
ttatgcaaggctggtggaaaacacccccccttgagaatacaaaatccgaa
aaagcctgataataatagggttaagcaaGGAGATTAAATTGGATGTTTTG
TCTTCTACTTGTTTAACACCAAAGACCTTTTCAAGAGAAAAATTATTAAG
AATGGTTGTAACAGAATCGAGATTAAGTTTGTGATaaagtttaatatttt
tagtCTTTTTACAAGAAGCTAAAGGATCGAAAACAGAGAAAGTAACTGGG
AGATGATCAGAACCCATGTTAGGAAGAGAGGAAATGTCTTCTATTTGAAA
AAATCTATCTTGAGAGGTGACTATTTGTTGAATGACCTCCTTGTATTCcc
cttttttgttcttataattaGGTGGCATATTGTATGTTTCCATATGAtta
ttatcaaaaagttctctAAAAACTAAGCCCCTAATGCCATCTTTAGTACT
ACCCCAAGAAGAATGTTTGGCATTGAGGTCACCAACAACTATTGAGTTAG
GTGGAAAAAGAAGTTTAATTAAGTCAAGATCTACAGTAAAGGAAGGTGGA
AAATAGCAACAGAAGAGATTAAAAGATCGTTTTAAATTTCTAGAGTCAGG
AAAGATGGAGATAGAGATAATTTCATGTTTACCAATTTGGTATTTTCTAA
TAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027147XLOC_027147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043451-proteinTCONS_00043451-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043451-exon-sc0004233-1491911889:735..1520TCONS_00043451-exon-sc0004233-1491911889:735..1520Clytia hemisphaericaexon
TCONS_00043451-exon-sc0004233-1510915933:735..1520TCONS_00043451-exon-sc0004233-1510915933:735..1520Clytia hemisphaericaexon
TCONS_00043451-exon-sc0004233-1575043694:735..1520TCONS_00043451-exon-sc0004233-1575043694:735..1520Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004233supercontigsc0004233:735..1520 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.57852	1.4644	2.08252	2.46099	5.87923	5.61651	6.04583	6.23562	2.26801	1.50416	2.19816	2.22969	1.95585	1.24526	1.14356	1.26673	1.32472	1.13035	1.94794	2.14562	3.41543	4.0238	1.02647	1.30318	6.14397	6.81057	2.1111	1.00916	1.33892	1.57779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top