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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043434 ID=TCONS_00043434|Name=TCONS_00043434|organism=Clytia hemisphaerica|type=transcript|length=316bp
NNTCATCAATATTCTGTCTGCTTCTGGTCCTGATAATCCAGCTCCTGATC
AGCTGAATCGATTCTAACTCTGTTCATCAATATTCTGTCTGCTTCTGGTC
CTGGTAATCCAGgtgCCAAGGATCCTTCTTGCTTTAGCGGAAGGATCATA
CAGGATCATATATTCTTAGTTTACCCAGAATACCCAGCTCACGAGACTTT
ATTTGATTAAAGAAAAACCAAACAGTTCTACTCAGACCAATCAGTACCAA
TCACAATCACAgctcacaaaaatttatattttttgaaaaaagaaataccC
CTCATTGATAATTAAT Run BLAST on NCBI transcript from alignment at sc0004221:6778..7941+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043434 ID=TCONS_00043434|Name=TCONS_00043434|organism=Clytia hemisphaerica|type=transcript|length=1164bp|location=Sequence derived from alignment at sc0004221:6778..7941+ (Clytia hemisphaerica)
NNTCATCAATATTCTGTCTGCTTCTGGTCCTGATAATCCAGGTAAGGCTT
TTTTCATTATATCTTCTCCCAAAAGTGCAATTATGCTACAAAGTACCAAA
ATTGGCCAAGAACCTACATTTTCCTGTGGATTTCGAATAAAATTAGTCCA
AATTGCGCATAATTATGACCCCTCCATTTTGTTGAGTAACCAATTAAAAG
CTCTATCTAGCTATCTATGAAGAATTGTATTATTTGTCTCTTTCAGCTCC
TGATCAGCTGAATCGATTCTAACTCTGTTCATCAATATTCTGTCTGCTTC
TGGTCCTGGTAATCCAGGTAAGGCATTTTTCATTATATCTTCTCCCAAAA
GTGCAATTTGTAATTATGTTATCTCTTAAATTCAAGGCCAGTTATGTACT
TACAAAGGAAATATGACCTACTCTTTCAGACGAATTGTAGGGATGGGTTA
ACTTGCAATCCTTTGCAATCAATTGAATAGTCACTTTCCAAAAGGTTGAT
AAAGGACATCTATTTAGGGAGTAAAACTTAGatcaaatgaaaatcaaaat
tttgtagGAATTTTTATTCTCGCTAAATTTTGTACTAAATTGTACTAAAT
TTATGTGGAACAGTTTTCTAAGACGAATGCTGATTTTATATATTAGCATT
TACTTAGGTATTCTTTAGTGCTCAATTGTAGGGGGtgtcattttgcaatt
tttcgacACATATTTTTATCACTTTATAATGCCCCCACCACctttttatg
acttttatgCTACAAAGTACCAAAATTGGCCAAGAACCTACATTTTCCGG
TGGATTACGAATAAAATCAGTCCAAAAGCGCTTAATTATGACCCCTTCCA
TTTTGTTGAGTAACCACGCTCCCCCCCCACATATTCCACCCACCCCTACA
ATAAGCACAGAAGAGTAGCTATCAAAATTTAAtcccttttctttcttttt
cttttttcaggtgCCAAGGATCCTTCTTGCTTTAGCGGAAGGATCATACA
GGATCATATATTCTTAGTTTACCCAGAATACCCAGCTCACGAGACTTTAT
TTGATTAAAGAAAAACCAAACAGTTCTACTCAGACCAATCAGTACCAATC
ACAATCACAgctcacaaaaatttatattttttgaaaaaagaaataccCCT
CATTGATAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043434-exon-sc0004221-1491911889:6778..6818 | TCONS_00043434-exon-sc0004221-1491911889:6778..6818 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1510915933:6778..6818 | TCONS_00043434-exon-sc0004221-1510915933:6778..6818 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1575043694:6778..6818 | TCONS_00043434-exon-sc0004221-1575043694:6778..6818 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1491911889:7024..7094 | TCONS_00043434-exon-sc0004221-1491911889:7024..7094 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1510915933:7024..7094 | TCONS_00043434-exon-sc0004221-1510915933:7024..7094 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1575043694:7024..7094 | TCONS_00043434-exon-sc0004221-1575043694:7024..7094 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1491911889:7738..7941 | TCONS_00043434-exon-sc0004221-1491911889:7738..7941 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1510915933:7738..7941 | TCONS_00043434-exon-sc0004221-1510915933:7738..7941 | Clytia hemisphaerica | exon |
| TCONS_00043434-exon-sc0004221-1575043694:7738..7941 | TCONS_00043434-exon-sc0004221-1575043694:7738..7941 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004221 | supercontig | sc0004221:6778..7941 + |
Blast
The following BLAST results are available for this feature:
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