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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043382 ID=TCONS_00043382|Name=TCONS_00043382|organism=Clytia hemisphaerica|type=transcript|length=1643bp
GCAGGATGTACTATATCGGTCATTTTATTTGTGCTAGCCATGGAATTGTT
ACTGCGAGCATCGAACACCAACAGCGCAAGTATCCCAAAACTGAGAGCAT
TTATGGATGATATAGCAGTGAAGACAACAAACCAGGAACTAATGCGAGAA
GTACTGCGCAGACTCGACGAGCTCATTAACTGGTCTGATATGAAATTCAA
AGCTAAGAAATCCCGAAGTATAACTTTGATAGTAAAGCAGTTTGAAGTGA
GATACATCATTGGTGGTGAAAACATACCAACAGTCAAAGAAGAGCCAGTC
AAAAGCTTAGGTAGATGGTATAAAGGTGAATTGAGAGATAGCGAACAAGG
GAAGCTGTTGAAAGAAAACGTCGAAAAAGGGCTTAAAGCTATCGACAGGA
CAGAACTGCCAGGGAAATTCAAATGCTGGTGCCTCCAGTATGGTTTATAC
CCAAGGATACGGTGGCCATTACAGATGTACGAAATACCGTTGACAACAGT
TATAGAAAGAATAGAGCAAAGATGTGGTGTATTCACTAGAAAATGGTTGG
GTCTCCCCAAACAACTGAACAATTCAGCGTTATACGGCAAGATGAACCAG
TTACAGCTACCAATTTGCTCCATAGTAGAAGAGTATAAGGCGACAAAGGT
ACAGACGGTTATGATGCTAAGATTTTCGAAtgacaatgaaataaaagaga
ACCCCCCACTAGTGAAGACTGGGAGAAAATGGAAGGCGGAGGAAGCAACT
TGCCAAGCAATATCGAATCTTAAACATGCGGATATTGTAGATGCGGTGCA
AGAAGCTAAAGAGGGAGTAGGCCTGCTAAATTTCTGACCATTCAGAGAGG
CAGGTAGAAAACAGAAGCGACAGGCAGTGGTTGCCGAAGTAAAGAGACAA
GAACAGGAAAAGCGATATCTTTACCTTGTACAATGCCCCTTAACAAGGCC
AATGTGTAAGATGGGAAGAGAACGTAGTAGAACGCAGGATTGGGTGGAAG
GAGATTTGGAGCTGGCAGCGGTCCCGAACCTCTTTCCTAATTAAGTCCAC
GTATGATGTTATGCCGTCACCCGCGAACTTGCTTAGATGGAAAGTGGCCC
AAGACGATAGGTGTAAATGTGGCAAGAAGGGAACCCTCAGGCACATCCTA
TCAAACTGTCATCTCTCTCTCGACAGGTATACCTGGAGACACAATGAGAT
ACTGAAGATCATCCACGACGTCCCGAAGAGAAAGCTCAATCAGTTCAATG
ATGGCGCCTTACCCAAGGTGGAAAAGATCCCCAGAATGAGATTTTGCTCC
AGGTAGCCAGTGAATAAGTACTGTGAGTACCCAGTGCACaagtgaaaatc
aaaatgaattattaaaatttgtgaaaatctgaTTTCCTTGACATCTTGAC
TCTATGACTGTCAAGTCAGATCTGAAGTGAACTGAAATGTGTGCCtgtat
ttatataaaaaataagtcCCTATCCATATTATGTCATTAAATTAACTAAG
TGAAAAAAGCAATTAAATGAGTAAATAATTAAAAGTAATTATCCTAGAGT
GACATATTGTTGacaaaaatgaactttaaaacaaaagacaCTCCACATGA
GAATTGAGAAACTGATGTGTCACAAGGGACTGAATGAAACAAA Run BLAST on NCBI protein sequence of TCONS_00043382-protein >TCONS_00043382-protein ID=TCONS_00043382-protein|Name=TCONS_00043382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
AGCTISVILFVLAMELLLRASNTNSASIPKLRAFMDDIAVKTTNQELMRE
VLRRLDELINWSDMKFKAKKSRSITLIVKQFEVRYIIGGENIPTVKEEPV
KSLGRWYKGELRDSEQGKLLKENVEKGLKAIDRTELPGKFKCWCLQYGLY
PRIRWPLQMYEIPLTTVIERIEQRCGVFTRKWLGLPKQLNNSALYGKMNQ
LQLPICSIVEEYKATKVQTVMMLRFSNDNEIKENPPLVKTGRKWKAEEAT
CQAISNLKHADIVDAVQEAKEGVGLLNF Run BLAST on NCBI transcript from alignment at sc0004177:4..1646 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043382 ID=TCONS_00043382|Name=TCONS_00043382|organism=Clytia hemisphaerica|type=transcript|length=1643bp|location=Sequence derived from alignment at sc0004177:4..1646 (Clytia hemisphaerica)
TTTGTTTCATTCAGTCCCTTGTGACACATCAGTTTCTCAATTCTCATGTG
GAGtgtcttttgttttaaagttcatttttgtCAACAATATGTCACTCTAG
GATAATTACTTTTAATTATTTACTCATTTAATTGCTTTTTTCACTTAGTT
AATTTAATGACATAATATGGATAGGgacttattttttatataaatacaGG
CACACATTTCAGTTCACTTCAGATCTGACTTGACAGTCATAGAGTCAAGA
TGTCAAGGAAAtcagattttcacaaattttaataattcattttgattttc
acttGTGCACTGGGTACTCACAGTACTTATTCACTGGCTACCTGGAGCAA
AATCTCATTCTGGGGATCTTTTCCACCTTGGGTAAGGCGCCATCATTGAA
CTGATTGAGCTTTCTCTTCGGGACGTCGTGGATGATCTTCAGTATCTCAT
TGTGTCTCCAGGTATACCTGTCGAGAGAGAGATGACAGTTTGATAGGATG
TGCCTGAGGGTTCCCTTCTTGCCACATTTACACCTATCGTCTTGGGCCAC
TTTCCATCTAAGCAAGTTCGCGGGTGACGGCATAACATCATACGTGGACT
TAATTAGGAAAGAGGTTCGGGACCGCTGCCAGCTCCAAATCTCCTTCCAC
CCAATCCTGCGTTCTACTACGTTCTCTTCCCATCTTACACATTGGCCTTG
TTAAGGGGCATTGTACAAGGTAAAGATATCGCTTTTCCTGTTCTTGTCTC
TTTACTTCGGCAACCACTGCCTGTCGCTTCTGTTTTCTACCTGCCTCTCT
GAATGGTCAGAAATTTAGCAGGCCTACTCCCTCTTTAGCTTCTTGCACCG
CATCTACAATATCCGCATGTTTAAGATTCGATATTGCTTGGCAAGTTGCT
TCCTCCGCCTTCCATTTTCTCCCAGTCTTCACTAGTGGGGGGTtctcttt
tatttcattgtcaTTCGAAAATCTTAGCATCATAACCGTCTGTACCTTTG
TCGCCTTATACTCTTCTACTATGGAGCAAATTGGTAGCTGTAACTGGTTC
ATCTTGCCGTATAACGCTGAATTGTTCAGTTGTTTGGGGAGACCCAACCA
TTTTCTAGTGAATACACCACATCTTTGCTCTATTCTTTCTATAACTGTTG
TCAACGGTATTTCGTACATCTGTAATGGCCACCGTATCCTTGGGTATAAA
CCATACTGGAGGCACCAGCATTTGAATTTCCCTGGCAGTTCTGTCCTGTC
GATAGCTTTAAGCCCTTTTTCGACGTTTTCTTTCAACAGCTTCCCTTGTT
CGCTATCTCTCAATTCACCTTTATACCATCTACCTAAGCTTTTGACTGGC
TCTTCTTTGACTGTTGGTATGTTTTCACCACCAATGATGTATCTCACTTC
AAACTGCTTTACTATCAAAGTTATACTTCGGGATTTCTTAGCTTTGAATT
TCATATCAGACCAGTTAATGAGCTCGTCGAGTCTGCGCAGTACTTCTCGC
ATTAGTTCCTGGTTTGTTGTCTTCACTGCTATATCATCCATAAATGCTCT
CAGTTTTGGGATACTTGCGCTGTTGGTGTTCGATGCTCGCAGTAACAATT
CCATGGCTAGCACAAATAAAATGACCGATATAGTACATCCTGC Coding sequence (CDS) from alignment at sc0004177:4..1646 >TCONS_00043382 ID=TCONS_00043382|Name=TCONS_00043382|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at sc0004177:4..1646 (Clytia hemisphaerica)
TCAGAAATTTAGCAGGCCTACTCCCTCTTTAGCTTCTTGCACCGCATCTA
CAATATCCGCATGTTTAAGATTCGATATTGCTTGGCAAGTTGCTTCCTCC
GCCTTCCATTTTCTCCCAGTCTTCACTAGTGGGGGGTtctcttttatttc
attgtcaTTCGAAAATCTTAGCATCATAACCGTCTGTACCTTTGTCGCCT
TATACTCTTCTACTATGGAGCAAATTGGTAGCTGTAACTGGTTCATCTTG
CCGTATAACGCTGAATTGTTCAGTTGTTTGGGGAGACCCAACCATTTTCT
AGTGAATACACCACATCTTTGCTCTATTCTTTCTATAACTGTTGTCAACG
GTATTTCGTACATCTGTAATGGCCACCGTATCCTTGGGTATAAACCATAC
TGGAGGCACCAGCATTTGAATTTCCCTGGCAGTTCTGTCCTGTCGATAGC
TTTAAGCCCTTTTTCGACGTTTTCTTTCAACAGCTTCCCTTGTTCGCTAT
CTCTCAATTCACCTTTATACCATCTACCTAAGCTTTTGACTGGCTCTTCT
TTGACTGTTGGTATGTTTTCACCACCAATGATGTATCTCACTTCAAACTG
CTTTACTATCAAAGTTATACTTCGGGATTTCTTAGCTTTGAATTTCATAT
CAGACCAGTTAATGAGCTCGTCGAGTCTGCGCAGTACTTCTCGCATTAGT
TCCTGGTTTGTTGTCTTCACTGCTATATCATCCATAAATGCTCTCAGTTT
TGGGATACTTGCGCTGTTGGTGTTCGATGCTCGCAGTAACAATTCCATGG
CTAGCACAAATAAAATGACCGATATAGTACATCCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043382-exon-sc0004177-1491911889:4..1646 | TCONS_00043382-exon-sc0004177-1491911889:4..1646 | Clytia hemisphaerica | exon |
| TCONS_00043382-exon-sc0004177-1510915933:4..1646 | TCONS_00043382-exon-sc0004177-1510915933:4..1646 | Clytia hemisphaerica | exon |
| TCONS_00043382-exon-sc0004177-1575043694:4..1646 | TCONS_00043382-exon-sc0004177-1575043694:4..1646 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004177 | supercontig | sc0004177:4..1646 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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