TCONS_00043115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043115
Unique NameTCONS_00043115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043115 ID=TCONS_00043115|Name=TCONS_00043115|organism=Clytia hemisphaerica|type=transcript|length=803bp
TCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGATGAAGTTGAAGACAA
TCAAGTAGAGGCGAAGATTGTCATCGAATTACAAGATGATGATGATACTG
ATGATGAACAATCCAAAGCTGTACATTTagATGTGGAGAAAACACTATCC
CGTGCCAAAGAAACAAAACCAGATGCACCTGTTGAGAATAATGAAAAaga
tcaaaacaaagaaaccgaATCAACACCACCAATCACCATCGATTATTTAT
GGAAAGATCGAACATATGAGAAAAAGTTCNAACTTTCAACCATAAACACC
GATAGCTATTTCAGAGAGGTCAGTCGGGCGCTCTTCACCCATATGTTTTC
AACGGAAAAAGTCAGTTGGAAGGTATCTCACATTTTGTGCAAGATACAAA
CGTGAAGGGGGAATTCACAGCAAACAATGTGCAGAACCCAAATTTGATGC
ATGGTGTTTAGTGCGCGGCTGCTCAAGGAATATTTTCAGCCATAAAAGAT
TTTTACCCAAATACCCAACTTGCTACGAACAGATAAAAAGATTGAGGGAG
CTGTTGGATATTGTGGTCGATGACAGattcttttaagatttttattatta
tttcaaGATTATTCCCATGTTTTATATAGACTTATTTTCATTTAGTTGTC
TAGTGAACTATtgcatataaaaaaataatagatCGTGACTGCACTTGAAT
ATGAAACGAtctcaaagttattttttaattttaggagtAATTCTGGAATA
CTCAAGGGTCTAAAGTTCATACCTGACTTTGTGACCGAAAAAATGAATCA
TAA
Run BLAST on NCBI

protein sequence of TCONS_00043115-protein

>TCONS_00043115-protein ID=TCONS_00043115-protein|Name=TCONS_00043115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
STAKPALLIEPDEVEDNQVEAKIVIELQDDDDTDDEQSKAVHLDVEKTLS
RAKETKPDAPVENNEKDQNKETESTPPITIDYLWKDRTYEKKFXLSTINT
DSYFREVSRALFTHMFSTEKVSWKVSHILCKIQT
Run BLAST on NCBI

transcript from alignment at sc0003927:3104..4791+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043115 ID=TCONS_00043115|Name=TCONS_00043115|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at sc0003927:3104..4791+ (Clytia hemisphaerica)
TCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGGTAAGATATTATTGCT
AATTTGATTACCATGTTTAGACATGCTTACTCATTTATTTTCTTGTTGCA
TGCCTTTAAAACAGAGTACATCATCACAAGAGCAGAAGTAATGAAATTTT
AATTATGTTTATATCTTACAGATGAAGTTGAAGACAATCAAGTAGAGGCG
AAGATTGTCATCGAATTACAAGATGATGATGATACTGATGATGAACAATC
CAAAGCTGTACATTTaggtaaatatttttgaaaactgaaatgaTAATCAA
AGAAAGCAAAGGCACGTTCATTTCCTGAATGCAATATTTCAAATCGACCC
TAATGTAATGATTCTTTCGATAGATGTGGAGAAAACACTATCCCGTGCCA
AAGAAACAAAACCAGATGCACCTGTTGAGAATAATGAAAAaggtatttaa
attttttgttaccttaagggaagaaattttcgcggggagaaaatttcgcg
gttttcgcggtttttggctaaaaccgccaaattaagttcccgcaaaattt
tacaaaattgtcaatccgcgaaattaaattcccgcgaaatttaataaaTT
CTACATTTATCCTGAAAATTGTTAAAACCCAtaggaaaattaaagaaaat
gtaTTGAAAATCttatgaaccgcgaaattaggttcccgcgaaatttctta
aattttattgaccgcgaaattaaattcccgcgaaatcaattttttcagcc
atccgcgaaattaaattgccgcgaaaatttcttcccttaaggtatgacAA
TATTTAACACTCTGGTATTGACTTTCTAGCTCCAACAAGTATGGTCAATG
TTTGAAGTATCATGTTGTATTCCAAAAATTACAAGGTCCTTTGAATAGGT
AGTTGTCGCGTCAACTCCCCTTTGGATCGTATCATTTAAGCGTCTATGAC
TTTTGAATAAGAATTAGCCATGTTCTGAAATGAACTATCTAACAGTAgtg
acatttttttcatttttaagatcaaaacaaagaaaccgaATCAACACCAC
CAATCACCATCGATTATTTATGGAAAGATCGAACATATGAGAAAAAGTTC
NAAATCAACACCACCAACCACCATCGATTATTTATGGAAAGATCGAACTT
AAGAGAAAAAGTTCTACCTTTCAACCATAAACACCGATAGCTATTTCAGA
GAGGTCAGTCGGGCGCTCTTCACCCATATGTTTTCAACGGAAAAAGTCAG
TTGGAAGGTATCTCACATTTTGTGCAAGATACAAACGTGAAGGGGGAATT
CACAGCAAACAATGTGCAGAACCCAAATTTGATGCATGGTGTTTAGTGCG
CGGCTGCTCAAGGAATATTTTCAGCCATAAAAGATTTTTACCCAAATACC
CAACTTGCTACGAACAGATAAAAAGATTGAGGGAGCTGTTGGATATTGTG
GTCGATGACAGattcttttaagatttttattattatttcaaGATTATTCC
CATGTTTTATATAGACTTATTTTCATTTAGTTGTCTAGTGAACTATtgca
tataaaaaaataatagatCGTGACTGCACTTGAATATGAAACGAtctcaa
agttattttttaattttaggagtAATTCTGGAATACTCAAGGGTCTAAAG
TTCATACCTGACTTTGTGACCGAAAAAATGAATCATAA

Coding sequence (CDS) from alignment at sc0003927:3104..4791+

>TCONS_00043115 ID=TCONS_00043115|Name=TCONS_00043115|organism=Clytia hemisphaerica|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0003927:3104..4791+ (Clytia hemisphaerica)
TCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGATGAAGTTGAAGACAA
TCAAGTAGAGGCGAAGATTGTCATCGAATTACAAGATGATGATGATACTG
ATGATGAACAATCCAAAGCTGTACATTTagATGTGGAGAAAACACTATCC
CGTGCCAAAGAAACAAAACCAGATGCACCTGTTGAGAATAATGAAAAaga
tcaaaacaaagaaaccgaATCAACACCACCAATCACCATCGATTATTTAT
GGAAAGATCGAACATATGAGAAAAAGTTCNAACTTTCAACCATAAACACC
GATAGCTATTTCAGAGAGGTCAGTCGGGCGCTCTTCACCCATATGTTTTC
AACGGAAAAAGTCAGTTGGAAGGTATCTCACATTTTGTGCAAGATACAAA
CGTGATCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGATGAAGTTGAA
GACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACAAGATGATGATGA
TACTGATGATGAACAATCCAAAGCTGTACATTTagATGTGGAGAAAACAC
TATCCCGTGCCAAAGAAACAAAACCAGATGCACCTGTTGAGAATAATGAA
AAagatcaaaacaaagaaaccgaATCAACACCACCAATCACCATCGATTA
TTTATGGAAAGATCGAACATATGAGAAAAAGTTCNAACTTTCAACCATAA
ACACCGATAGCTATTTCAGAGAGGTCAGTCGGGCGCTCTTCACCCATATG
TTTTCAACGGAAAAAGTCAGTTGGAAGGTATCTCACATTTTGTGCAAGAT
ACAAACGTGATCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGATGAAG
TTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACAAGATGAT
GATGATACTGATGATGAACAATCCAAAGCTGTACATTTagATGTGGAGAA
AACACTATCCCGTGCCAAAGAAACAAAACCAGATGCACCTGTTGAGAATA
ATGAAAAagatcaaaacaaagaaaccgaATCAACACCACCAATCACCATC
GATTATTTATGGAAAGATCGAACATATGAGAAAAAGTTCNAACTTTCAAC
CATAAACACCGATAGCTATTTCAGAGAGGTCAGTCGGGCGCTCTTCACCC
ATATGTTTTCAACGGAAAAAGTCAGTTGGAAGGTATCTCACATTTTGTGC
AAGATACAAACGTGATCGACGGCAAAGCCAGCCTTGTTAATTGAACCTGA
TGAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATTACAAG
ATGATGATGATACTGATGATGAACAATCCAAAGCTGTACATTTagATGTG
GAGAAAACACTATCCCGTGCCAAAGAAACAAAACCAGATGCACCTGTTGA
GAATAATGAAAAagatcaaaacaaagaaaccgaATCAACACCACCAATCA
CCATCGATTATTTATGGAAAGATCGAACATATGAGAAAAAGTTCNAACTT
TCAACCATAAACACCGATAGCTATTTCAGAGAGGTCAGTCGGGCGCTCTT
CACCCATATGTTTTCAACGGAAAAAGTCAGTTGGAAGGTATCTCACATTT
TGTGCAAGATACAAACGTGATCGACGGCAAAGCCAGCCTTGTTAATTGAA
CCTGATGAAGTTGAAGACAATCAAGTAGAGGCGAAGATTGTCATCGAATT
ACAAGATGATGATGATACTGATGATGAACAATCCAAAGCTGTACATTTag
ATGTGGAGAAAACACTATCCCGTGCCAAAGAAACAAAACCAGATGCACCT
GTTGAGAATAATGAAAAagatcaaaacaaagaaaccgaATCAACACCACC
AATCACCATCGATTATTTATGGAAAGATCGAACATATGAGAAAAAGTTCN
AACTTTCAACCATAAACACCGATAGCTATTTCAGAGAGGTCAGTCGGGCG
CTCTTCACCCATATGTTTTCAACGGAAAAAGTCAGTTGGAAGGTATCTCA
CATTTTGTGCAAGATACAAACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026845XLOC_026845Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043115-proteinTCONS_00043115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043115-exon-sc0003927-1491911889:3104..3137TCONS_00043115-exon-sc0003927-1491911889:3104..3137Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1510915933:3104..3137TCONS_00043115-exon-sc0003927-1510915933:3104..3137Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1575043694:3104..3137TCONS_00043115-exon-sc0003927-1575043694:3104..3137Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1491911889:3275..3370TCONS_00043115-exon-sc0003927-1491911889:3275..3370Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1510915933:3275..3370TCONS_00043115-exon-sc0003927-1510915933:3275..3370Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1575043694:3275..3370TCONS_00043115-exon-sc0003927-1575043694:3275..3370Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1491911889:3477..3545TCONS_00043115-exon-sc0003927-1491911889:3477..3545Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1510915933:3477..3545TCONS_00043115-exon-sc0003927-1510915933:3477..3545Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1575043694:3477..3545TCONS_00043115-exon-sc0003927-1575043694:3477..3545Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1491911889:4124..4206TCONS_00043115-exon-sc0003927-1491911889:4124..4206Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1510915933:4124..4206TCONS_00043115-exon-sc0003927-1510915933:4124..4206Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1575043694:4124..4206TCONS_00043115-exon-sc0003927-1575043694:4124..4206Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1491911889:4271..4791TCONS_00043115-exon-sc0003927-1491911889:4271..4791Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1510915933:4271..4791TCONS_00043115-exon-sc0003927-1510915933:4271..4791Clytia hemisphaericaexon
TCONS_00043115-exon-sc0003927-1575043694:4271..4791TCONS_00043115-exon-sc0003927-1575043694:4271..4791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003927supercontigsc0003927:3104..4791 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.40358	0	0.135252	0.132323	0	0.487966	1.53577	0.747638	0.880787	0	0.998436	0.866271	0.524336	1.16297	0.0169574	0.0363959	0.0224184	0.0229781	0	0	0.173242	0.0845013	1.36963	0.591467	1.17564	1.25336	0	0.0874031	0.16573	0.54033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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