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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042690 ID=TCONS_00042690|Name=TCONS_00042690|organism=Clytia hemisphaerica|type=transcript|length=1080bp
CCCATTcattgttaatacattttttatttgaaagtaatctcttcatggaa
taaaaagatatagtcaaatcttgtagggtcatttttcaaaatttttttgc
caaatttcgattttcgcatttcgccattttaccctacgcaaacgcacgtg
cgGCAGGACTAGGAGAGTTTGAGAAAGGCAGAGACGAAAACAACAGATGC
GgatattgtaaaaaaatgataTCCAAATCAACCATCAAAGCAATAGAGTG
TGACCTATGCTCTAAATGGTTCCACAGCAACAAACAGTGTGGAAGTGAGC
TAGTGCAGGTGTACAACCAAATTATATTACTAGGTGACAGCCCTCTTCTA
AAGTGGTACTGTAAGACGTGTGAAAGTGAAATAGAGAACCATCAACAGAA
AATAGCAGTCAATGTAATGGCCCTAAAAGCGGCAGAAGAAAAAGTAGAAG
AAAAGAGCGACACCATAGCAAAACTTAAGGCAGAGGCAAAGCTGATGAAA
GATAATCTAAAGATCGAGGAAGAAAAACACCAGATGGCATTAGTACAGAT
AAATGGAAAAGAAAGATGGATATCAGAAGTCGCAAGAGCAATAGGCATAC
ACCCAAAGCAGAATGAAGAAGGACAAGAAACAAATGGAAAGGAAGTGCTC
CAGGGCTTAAAAAGAAAATGGGATGAAAGCAAAAAACGGGAAAAAGGACT
TAGAGACGAGATAAAACAATACAAGAAAAACATAGAGGAGACTATAGCGG
AGAAaagagaaatagaaaaaatgctACAAGAAATGATAGAAACGCTGAAC
AAGAGAAGGAAAGTAGGCAGGAGAAAGAAATTACGATTCCAGATAGAAGA
GCAGAANCGTGGAGAAaagagaaatagaaaaaatgctACAAGAAATGATA
GAGAACGCTAAACAAGAGAAGGAAAGTAGGCAGGAGAAAGAAATTACGAT
TCCAGATAGAAGAGCAGAAGCTGAGGAAACAGAAATCACCAGAAAAGAGA
AGAAGATAGAGGAAAAAGTCCAGGGAGAAGCAGAACCAGCAGTGACAAAG
AATAAACAGCAGAACCACAAAGGAAAATGG Run BLAST on NCBI protein sequence of TCONS_00042690-protein >TCONS_00042690-protein ID=TCONS_00042690-protein|Name=TCONS_00042690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MISKSTIKAIECDLCSKWFHSNKQCGSELVQVYNQIILLGDSPLLKWYCK
TCESEIENHQQKIAVNVMALKAAEEKVEEKSDTIAKLKAEAKLMKDNLKI
EEEKHQMALVQINGKERWISEVARAIGIHPKQNEEGQETNGKEVLQGLKR
KWDESKKREKGLRDEIKQYKKNIEETIAEKREIEKMLQEMIETLNKRRKV
GRRKKLRFQIEEQXRGEKRNRKNATRNDRER Run BLAST on NCBI transcript from alignment at sc0003609:7277..8356 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042690 ID=TCONS_00042690|Name=TCONS_00042690|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0003609:7277..8356 (Clytia hemisphaerica)
CCATTTTCCTTTGTGGTTCTGCTGTTTATTCTTTGTCACTGCTGGTTCTG
CTTCTCCCTGGACTTTTTCCTCTATCTTCTTCTCTTTTCTGGTGATTTCT
GTTTCCTCAGCTTCTGCTCTTCTATCTGGAATCGTAATTTCTTTCTCCTG
CCTACTTTCCTTCTCTTGTTTAGCGTTCTCTATCATTTCTTGTagcattt
tttctatttctcttTTCTCCACGNTTCTGCTCTTCTATCTGGAATCGTAA
TTTCTTTCTCCTGCCTACTTTCCTTCTCTTGTTCAGCGTTTCTATCATTT
CTTGTagcattttttctatttctcttTTCTCCGCTATAGTCTCCTCTATG
TTTTTCTTGTATTGTTTTATCTCGTCTCTAAGTCCTTTTTCCCGTTTTTT
GCTTTCATCCCATTTTCTTTTTAAGCCCTGGAGCACTTCCTTTCCATTTG
TTTCTTGTCCTTCTTCATTCTGCTTTGGGTGTATGCCTATTGCTCTTGCG
ACTTCTGATATCCATCTTTCTTTTCCATTTATCTGTACTAATGCCATCTG
GTGTTTTTCTTCCTCGATCTTTAGATTATCTTTCATCAGCTTTGCCTCTG
CCTTAAGTTTTGCTATGGTGTCGCTCTTTTCTTCTACTTTTTCTTCTGCC
GCTTTTAGGGCCATTACATTGACTGCTATTTTCTGTTGATGGTTCTCTAT
TTCACTTTCACACGTCTTACAGTACCACTTTAGAAGAGGGCTGTCACCTA
GTAATATAATTTGGTTGTACACCTGCACTAGCTCACTTCCACACTGTTTG
TTGCTGTGGAACCATTTAGAGCATAGGTCACACTCTATTGCTTTGATGGT
TGATTTGGAtatcatttttttacaatatcCGCATCTGTTGTTTTCGTCTC
TGCCTTTCTCAAACTCTCCTAGTCCTGCcgcacgtgcgtttgcgtagggt
aaaatggcgaaatgcgaaaatcgaaatttggcaaaaaaattttgaaaaat
gaccctacaagatttgactatatctttttattccatgaagagattacttt
caaataaaaaatgtattaacaatgAATGGG Coding sequence (CDS) from alignment at sc0003609:7277..8356 >TCONS_00042690 ID=TCONS_00042690|Name=TCONS_00042690|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0003609:7277..8356 (Clytia hemisphaerica)
TTAGCGTTCTCTATCATTTCTTGTagcattttttctatttctcttTTCTC
CACGNTTCTGCTCTTCTATCTGGAATCGTAATTTCTTTCTCCTGCCTACT
TTCCTTCTCTTGTTCAGCGTTTCTATCATTTCTTGTagcattttttctat
ttctcttTTCTCCGCTATAGTCTCCTCTATGTTTTTCTTGTATTGTTTTA
TCTCGTCTCTAAGTCCTTTTTCCCGTTTTTTGCTTTCATCCCATTTTCTT
TTTAAGCCCTGGAGCACTTCCTTTCCATTTGTTTCTTGTCCTTCTTCATT
CTGCTTTGGGTGTATGCCTATTGCTCTTGCGACTTCTGATATCCATCTTT
CTTTTCCATTTATCTGTACTAATGCCATCTGGTGTTTTTCTTCCTCGATC
TTTAGATTATCTTTCATCAGCTTTGCCTCTGCCTTAAGTTTTGCTATGGT
GTCGCTCTTTTCTTCTACTTTTTCTTCTGCCGCTTTTAGGGCCATTACAT
TGACTGCTATTTTCTGTTGATGGTTCTCTATTTCACTTTCACACGTCTTA
CAGTACCACTTTAGAAGAGGGCTGTCACCTAGTAATATAATTTGGTTGTA
CACCTGCACTAGCTCACTTCCACACTGTTTGTTGCTGTGGAACCATTTAG
AGCATAGGTCACACTCTATTGCTTTGATGGTTGATTTGGAtatcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042690-exon-sc0003609-1491911889:7277..8356 | TCONS_00042690-exon-sc0003609-1491911889:7277..8356 | Clytia hemisphaerica | exon |
| TCONS_00042690-exon-sc0003609-1510915933:7277..8356 | TCONS_00042690-exon-sc0003609-1510915933:7277..8356 | Clytia hemisphaerica | exon |
| TCONS_00042690-exon-sc0003609-1575043694:7277..8356 | TCONS_00042690-exon-sc0003609-1575043694:7277..8356 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003609 | supercontig | sc0003609:7277..8356 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013083 | Znf_RING/FYVE/PHD |
Blast
The following BLAST results are available for this feature:
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