TCONS_00042327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042327
Unique NameTCONS_00042327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2003

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042327 ID=TCONS_00042327|Name=TCONS_00042327|organism=Clytia hemisphaerica|type=transcript|length=2003bp
GTTTATACTGACTGAGGGCAAGAAATAAATGCTTTGTGTAGTGCTTTGTT
ATTCAATACACCATCACATTCTCCTAAAGGTCTATCAAGCATAAAAAACC
ACCCACCTTCTATTTTAGAgatcttaaaatgaaaaaaacaactttaaatC
CCAATTAAATCAGGAGAAAATATCAAATACACAGTTTTGACTGCTCAAGA
AATTTATATTCAGTTATATTATGGATTCTGAAACTATTCAAGaTTGAATT
GGTTGGAAACTTCGATTGAACATTTTGGTTTATGCCAGGGAGtctttttt
ccatttaaataaatttcaaattatcgTTAGCGCTATTACTGTGCTCATCT
TGTATACTGTATTAAAAGAATATTATTAAGGTTTGATTCAATTATGGCGT
TAACTGTGACAAACAAATGAGAACATGACAAATACATATACCAAATAAAA
ACATAGACcaaatcttatttttgtttaaaagagaCAATGTGACAGAAACA
GAACACCTTTCAATAATAAGAATTATGTTTGTACTTGTGttgtttctttt
taaaaattgatttagaaaatggtgatttttgaaatttctgttAATTTTTA
GTATCACAGCCCATCAACTCACATATATTTATGTTATTTTGTATTTATGT
TAtataatcttcattttcattccAGCTCTTCAGAATGAAGCAATCAGCCA
ATCAATACTTCTCTCGAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCt
atcaaaaaataataagtgacAGCATCACTGATCTCCAATCTCAGACCCCT
CCACTTATACTATGTGAAAGGAAATTGCTGACTTTATCTAGTCATGTTGG
GTGTACGGATGGTATTCTGTATGCAATGCCTTTGATAGCAGAAATTAATG
GTGAAAGACATTTATACATTAGGTGTTTTGAGTCGGGTGTGTACAAAGGC
TACTTTGATCAAACTGAAATGTTTGGTGAACTCATGGATCAGTATGAAAT
CACCAAGAAGTTTGTCATCAGGATATACACAGAGTGGGATGTTCTTGCTG
TTTATCACACTGAACGAAACAAACATAAAAAGgGGACTAAGCATTCAACA
ACATTTAAAAGGCTCACAACACTCGATAAACATTCAATCGATAAAACCAT
TAAATCAGCACACGACTCTTTAAAGGAAACATTTAAAAGTTTTGCACCtg
gttttgtattttattgccGTAGAGACATGTCTCATACAAATCGAAATACT
GATCCCAAAGATAACCAATTTTACTTGATTGAGGGTCTTGGTGCATCTGA
ACTCTGGTTTAGAAACTTTCAAGATTATGGAACCGAACATCCAAACGACC
CATATCCAACCGTTCTTGAACAGTTCAaaggaaaagaagaactttCACTG
ATCGAGCAATTCCAAGTTTTATCCCATGTCCCGAATCTTCATTCTTGGGC
TTCTGAATCAAAAAGTGGAACGAAAAAACAAcaatattttgcttcaaatg
GTTACTCCCCTCGAGATATCATCTTACGTGCTCTAGATGACATTCATTCT
GACATGGAAGAAAAAGTCTCATCTATAACACCTATCTACTCGCTGATTTT
ATCCAAACAATACCATGTCCCGAAAGTGTCTATCCACAAACAAAATaaaC
GGCGTACTTGCAATCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCT
TTGCTAGAGCATCTTGACCACCCTAATTTTGTTCAACCTGTGTATGAAAA
GTTGGATGTTTACCCAAATTTTCGATACAATATTTTCAATCACGGGACGA
TCGTTTGGCGTGAACTATCACAAAACCAACATGTTGTGGTTATGAATGAT
TACGACTCCGATAATATTAACGGGAACGTCAAGGTTGGTTTAAACCATTA
AATGATATACTTTGAAGGCTTAGATAATTTTTttagacgaaaaaaaaacc
gatTCGTAATTTACAATAGTTGTAAGATGGAAAAAGAAGGTGtcttaaaa
aat
Run BLAST on NCBI

transcript from alignment at sc0003345:3486..7230-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042327 ID=TCONS_00042327|Name=TCONS_00042327|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0003345:3486..7230- (Clytia hemisphaerica)
GTTTATACTGACTGAGGGCAAGAAATAAATGCTTTGTGTAGTGCTTTGTT
ATTCAATACACCATCACATTCTCCTAAAGGTCTATCAAGCATAAAAAACC
ACCCACCTTCTATTTTAGAGATCTTAAAATGAAAAAAACAACTTTAAATC
CCAATTAAATCAGGAGAAAATATCAAATACACAGTTTTGACTGCTCAAGA
AATTTATATTCAGTTATATTATGGATTCTGAAACTATTCAAGGTACAATC
TTTTTTTATTTTATTTTCAATACGAAAAATATTAATATATCACACAGAAT
AGAATTATATGTTATAAGGAACAAAACTGAACCAATACATGTGACTAATG
ACATAACAATTGACATACATAAACCTCTCAATTTTTTTACAGATTGAATT
GGTTGGAAACTTCGATTGAACATTTTGGTTTATGCCAGGGAGTCTTTTTT
CCATTTAAATAAATTTCAAATTATCGTTAGCGCTATTACTGTGCTCATCT
TGTATACTGTATTAAAAGAATATTATTAAGGTTTGATTCAATTATGGCGT
TAACTGTGACAAACAAATGAGAACATGACAAATACATATACCAAATAAAA
ACATAGACCAAATCTTATTTTTGTTTAAAAGAGACAATGTGACAGAAACA
GAACACCTTTCAATAATAAGAATTATGTTTGTACTTGTGTTGTTTCTTTT
TAAAAATTGATTTAGAAAATGGTGATTTTTGAAATTTCTGTTAATTTTTA
GTATCACAGCCCATCAACTCACATATATTTATGTTATTTTGTATTTATGT
TATATAATCTTCATTTTCATTCCAGCTCTTCAGAATGAAGCAATCAGCCA
ATCAATACTTCTCTCGAAATGCTTGGAGGCTGCCTCTTTGGATATGCTCT
ATCAAAAAATAATAAGTGACAGCATCACTGATCTCCAATCTCAGACCCCT
CCACTTATACTATGTGAAAGGAAATTGCTGACTTTATCTAGTCATGTTGG
GTGTACGGATGGTATTCTGTATGCAATGCCTTTGATAGCAGAAATTAATG
GTGAAAGACATTTATACATTAGGTAAAGAATTTGGCTTCTACTTTAAGTG
TTCGCTCTAGGAATTATTTCAATCTCTCTTTTCCCATGACACTTTGTATC
AACAACTGCTTAAAATCGAAATGTTTTATTTTTTAAACTTATTGATTTTA
TTTGTTTGCATTAAATTTCAGGTGTTTTGAGTCGGGTGTGTACAAAGGCT
ACTTTGATCAAACTGAAATGTTTGGTGAACTCATGGATCAGTATGAAATC
ACCAAGAAGTTTGTCATCAGGATATACACAGAGTGGGATGTTCTTGCTGT
TTATCACACTGAACGAAACAAACATAAAAAGGGTAAATAATTTTGAAATT
TAGTCTTTTTTACCAATAGTTGTATTTTTGTTATTACTGAACTGAATTTT
TGAAATTGTTGCCCAAACTATATTCTATTATATACTTTTTTATTCAGGGA
CTAAGCATTCAACAACATTTAAAAGGCTCACAACACTCGATAAACATTCA
ATCGATAAAACCATTAAATCAGCACACGACTCTTTAAAGGAAACATTTAA
AAGTTTTGCACCTGGTTTTGTATTTTATTGCCGTAGAGACATGTCTCATA
CAAATCGAAATACTGATCCCAAAGATAACCAGTAAGATAATACTTTTCTT
TGGTTCTCTACTGTCTTTTCTATTTGAAGAGAGTATTTTTAGAAACTAAG
ATTATGTACAAATTCGCCTCTGTGAAATATTCCACTTTTACATTACAGCT
GTTCTTCGAACTCGAACTCGGAAATCTAATTTGTTGAATTACAGAGAGTT
TTTTAAGAGACCTAGAAAATTCAATAGTATCAGGGATAGAAAGAATTAGG
GAAAGTCTAGTTCGCTAAAAGAAATTTTATTTTATTTCTTATTTTTCACA
GATTTTACTTGATTGAGGGTCTTGGTGCATCCGAACTCTGGTTTAGAAAC
TTTCAAGATTATGGAACCGAACATCCAAACGACCCATATCCAACCGTTCT
TGAACAGTTCAAAGGAAAAGAAGAACTTTCACTGATCGAGCAATTCCAAG
TTTTATCCCATGTCCCGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGT
GGAACGAAAAAACAACAATATTTTGCTTCAAATGGTTACTCCCCTCGAGA
TATCATCTTACGTGCTCTAGATGACATTCATTCTGACATGGAAGAAAAAG
TCTCATCTATAACACCTATCTACTCGCTGATTTTATCCAAACAATACCAT
GTCCCGAAAGTGTCTATCCACAAACAAAATGTAAGTGTTAAACTTTTCAC
GTTATATGATTGATAAGATCCATTCATTTTCTAGTCTTCGGAAGACAAAT
CATAAAAATTTATATAATTACTACAAATAAGAAATGAAATTATGATGATT
TTTTCCGATAAATTATTAATCTCGATATCCTAAATATTTTAAATTTAGAA
ACGGCGTACTTGCAATCAAACTCACCGGCGAAAAGTATTGGACAAGACGG
CTTTGCTAGAGCATCTTGACCACCCTAATTTTGTTCAACCTGTATATGAA
AAGTTGGATGTTTACCCAAATTTTCGATACAATATTTTCAACNATGTACA
AATTCGCCTCTGTGAAATATTCCACTTTTACATTACAGCTGTTCTTCGAA
CTCGAACTCGGAAATCTAATTTGTTGAATTACAGACAGTTTTTTAAGAGA
CCTAGAAAATTCAATAGTATCAGGGATAGAAAGAATTAGTGAAATTCTAG
TTCGCTAAAAGAAATTTTATTTTATTTCTTATTTTTCACAGATTTTACTT
GATTGAGGGTCTTGGTGCATCTGAACTCTGGTTTAGAAACTTTCAAGATT
ATGGAACCGAACATCCAAACGACCCATATCCAACCGTTCTTGAACAGTTC
AAAGGAAAAGAAGAACTTTCACTGATCGAGCAATTCCAAGTTTTATCCCA
TGTCCCGAATCTTCATTCTTGGGCTTCTGAATCAAAAAGTGGAACGAAAA
AACAACAATATTTTGCTTCAAATGGTTACTCCCCTCGAGATATCATCTTA
CGTGCTCTAGATGACATTCATTCTGACATGGAAGAAAAAGTCTCATCTAT
AACACCTATCTACTCGCTGATTTTATCCAAACAATACCATGTCCCGAAAG
TGTCTATCCACAAACAAAATGTAAGTGTTAAACTTTTCACGTTATATGAT
TGATAAGATCCATTCATTTTCTAGTCTTCGGAAGACAAATCATAAAAATT
GATATAATTACTACAAATAAGAAATGAAATTATGATGATTTTTTCCGATA
AATCATTAATCTCGATATCCTAAATATTTTAAATTTAGAAACGGCGTACT
TGCAATCAAACTCACCGGCGAAAAGTATTGGACAAGACGGCTTTGCTAGA
GCATCTTGACCACCCTAATTTTGTTCAACCTGTGTATGAAAAGTTGGATG
TTTACCCAAATTTTCGATACAATATTTTCAATCACGGGACGATCGTTTGG
CGTGAACTATCACAAAACCAACATGTTGTGGTTATGAATGATTACGACTC
CGATAATATTAACGGGAACGTCAAGGTTGGTTTAAACCATTAAATGATAT
ACTTTGAAGGCTTAGATAATTTTTTTAGACGAAAAAAAAACCGATTCGTA
ATTTACAATAGTTGTAAGATGGAAAAAGAAGGTGTCTTAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026176XLOC_026176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042327-exon-sc0003345-1575043694:6989..7230TCONS_00042327-exon-sc0003345-1575043694:6989..7230Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1575043694:6159..6838TCONS_00042327-exon-sc0003345-1575043694:6159..6838Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1575043694:5849..6009TCONS_00042327-exon-sc0003345-1575043694:5849..6009Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1575043694:5550..5733TCONS_00042327-exon-sc0003345-1575043694:5550..5733Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1575043694:4011..4389TCONS_00042327-exon-sc0003345-1575043694:4011..4389Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1575043694:3486..3842TCONS_00042327-exon-sc0003345-1575043694:3486..3842Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:6989..7230TCONS_00042327-exon-sc0003345-1510915933:6989..7230Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:6159..6838TCONS_00042327-exon-sc0003345-1510915933:6159..6838Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:5849..6009TCONS_00042327-exon-sc0003345-1510915933:5849..6009Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:5550..5733TCONS_00042327-exon-sc0003345-1510915933:5550..5733Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:4011..4389TCONS_00042327-exon-sc0003345-1510915933:4011..4389Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1510915933:3486..3842TCONS_00042327-exon-sc0003345-1510915933:3486..3842Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:6989..7230TCONS_00042327-exon-sc0003345-1491911889:6989..7230Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:6159..6838TCONS_00042327-exon-sc0003345-1491911889:6159..6838Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:5849..6009TCONS_00042327-exon-sc0003345-1491911889:5849..6009Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:5550..5733TCONS_00042327-exon-sc0003345-1491911889:5550..5733Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:4011..4389TCONS_00042327-exon-sc0003345-1491911889:4011..4389Clytia hemisphaericaexon
TCONS_00042327-exon-sc0003345-1491911889:3486..3842TCONS_00042327-exon-sc0003345-1491911889:3486..3842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003345supercontigsc0003345:3486..7230 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.707824	0.159755	0.810533	0.791409	0.920057	0.875493	1.81917	1.59873	0.717984	1.27119	0	0	0	0	0	0.0752138	0	0	0	0	0.489302	0.762105	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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