TCONS_00042149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042149
Unique NameTCONS_00042149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042149 ID=TCONS_00042149|Name=TCONS_00042149|organism=Clytia hemisphaerica|type=transcript|length=563bp
gtACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGA
GGCCCGCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGA
GGCTGTTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGG
ACGTCGAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCA
GAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACCGCCCGC
ATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATCCCACCA
ATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAGTGTTTG
GACAATTTCCCAGAACTGCGCCATCCGCTaggtaaagtaaagaaattcgA
AGATATGTGCAAAATATCGGATACGATCAAAGAAAAAGCCAAGGCGATCG
CGGACAAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0003234:235..6731-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042149 ID=TCONS_00042149|Name=TCONS_00042149|organism=Clytia hemisphaerica|type=transcript|length=6497bp|location=Sequence derived from alignment at sc0003234:235..6731- (Clytia hemisphaerica)
GTACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGGTAAGAAGATTGGAGAGTCTGTTATAAATGTTGACA
TTTGGTGCTCAGAGTCATTCACAATAGTACAAGAAAAACACATGACCATT
GATATCCTGCTGTATANGAGTCATTCACAATAGTACAAGAAAAAAGCATG
ACTATTGATATCCCGCTGCATGCTTTACTTCCTAACTAGTTGAGAGAAAA
TAAATACAAACTCTCGATGACGGAATTAATTTGTGGAGCTTTGGAGATTT
TGCTCGCCAGCTGGAAAGTACTACTATAGTTTTCTACTGAACCAACTATA
GACATACAAACAGAATAGATATTTTTTGTGTAGTCTAGGATTTTTTAGAC
AGTCTTGCGATTACTTTCATGGGATCCAGGCTATTTAAGAACTGAACGGA
ACATTTGAAGGAGCGGGGATTCGAACAGGGGACCCCTTATGGATGGACCT
AAAGAGAAAGGGAACAGGTTTTGGCCGGAGATAAATAGTCCTACAGCTAC
GATCACTGTGTACATAAAATAAACACGGTACACAGACCAGACCACATCAT
ACATACACACCCCTGTCTCAGTGCCCCGGTGGAACCTTTTCCCTCAGTGG
GGATGAAAATTTCTATTGAAATCCCAATAGGGATAGAAAATCTATTGCTT
CCAGCTCAAAAATTCCAGTGGGGATGGTTTTGGAGTCCAAATTTTTCCAT
TCAATTGTCAATGGGGATAGAATCATAGGCCAATTTCCCAGTGGGGTTGA
AAATGTAGGGTATTTTTTTCACCGGGGACGATTTTTTGGCCTATTTTTCC
ACCGGGGCGGGGGTCCACTGGGTTTTGTGACACAGGGGTGTATATACCTA
CATTATGAGAGCTAAAGAAGTACAGAATGCGCTATTACCTAAACTTTCCT
TTTTCTCAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGAGGCCC
GCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGAGGCTG
TTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGGACGTC
GAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCAGGTCG
GTCTCCTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATTTTTATCAATTTTACAGTCGGACCTGCAAGATACTGAAG
TTGAGCCAGTGCGGTTAGCACGTTCGACAGTATTCACGTAGGTGTTAGAA
GTAATTCCATCAGTTATATGAGGTTATTCAGACAATGTTTTTTTTCACAC
TTTTTAGAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACC
GCCCGCATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATC
CCACCAATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAG
TGGTATGTTCAAAACTCTTTTTCTCTCGTTTGAAAAATTATTTCAGGGAG
TAATTTTCGTAGATTTTGCAGTTTTCTGTTTAGCTCAACGCAGATAAAAT
AGTTTACCCCTCCCCCTGATTACCTTACCCAAATATATAGAAGTCGACAA
CTGAAAAAATATTCTTTTTTAATCGATTAAAAGTTCGTTCAACGAATCGA
GAGTTTGTGAAATCCAAAAATAATACTGACCACATTCCTATCTGACTTTC
TCCAAACCTAGTTACCCCCTCTCGATTTTCCTAATAAATGTTGAATTATT
GATATTCTCTTTACGATATATTGGCAACAAAATGCAGCCCAATTGAGCGG
TGTTTCTAAATTTCTTGGGTAGTGACTCAAAATTCGAAACCACATGAAAC
ACGAGCCAAACAAAATTTGAAATTGTTCCTTTTATTGAAAAGAAACTATT
TCAAATTTGACTTCAAATTCATTAATAAATCACATAGCTTGTTTGTTTTC
ATTACCATTTCTGTTACCATAGAAACATTTCAATGACGTATTCAGTATTA
AATTCTTATTGCGGCAAGTCTCTCTATCGATAATCAAAAATTTAAAATTT
AAAATTTAAAATCTTAAAAATAATTTTGGATACTGAGGAGTTGATTCACG
AAAAAATGAAGAAATGTTATCTTCTTTCTTTGTTTATCATTTTGCTGTTG
ATTACAAATACTTCACCTAACCAATATCACCTCATTACATCTAATGGTCA
TCCTTCTAAAGACCCTTACTTCACATTTTCATCCAAGTTCAAAGAACAAT
GTATAAGTGTCTGTGGTACCACTTGTAAATGCCATTCCTACTCCATCAAA
CAAACATCCAGTAATCATTATGAATGTCAATTTTTCGATAGTGCTACCAT
GCGTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCATCAATG
CCAGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGGGTGTT
TACAAGGTGAACTGGATGGGGCGTTTTTTGAAAAATATCAGATGCAACAT
GGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCAGCCTC
GCCACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCTTTGGT
GACCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAAATGAG
TGTCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACACAGGCG
ACACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGAGTCAA
GATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAATCTTT
GACGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGATCGAG
ATTACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGTTTAAT
AGATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGGAGAAC
GTATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAAAGCTA
CAGGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATTGTTCT
TCAGTCTCGGATGGATTTCATTACAAAAGTTATAAAAAGAGGCTTTTCCG
TCGTGAAGCAAAATTTGACGAAGCTAGGTGAATTTTTTTTTTTTTTTGCT
AGCGTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAACTAAGC
AAATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAACAAATT
GACAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGATCTGAA
CAGTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGT
ATGCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAATATGTG
AAACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTTGGTAA
AAGCGGTCCCACACTAGGATTGTTACATGCAGTTTTTTGAAAGAAAACAT
ACCTATTGTGTAATTAGGTAATGCGTTGTTTCATTTTCCTAAAATTATAA
ATTGAATTTATTTATTTTTCATTTCAATAAAATATCGCACACAATGTCGA
CTTTTATATACAGATATAGACAAAAATACAGGCTGTTTGTAGGAAAAAAA
TAAGATCTAGCTGTTTAAAAGTCTTCTATATAGTTTTTTGAGAGCTTTCG
AATGGTATACTTGATAATGTCTGAAAATTAGTTTGAAATTTTCAAAAAAT
TTCGCCCTTAGGGTTTTGCCTGGGGAAAAAAGAAATATCCCAAAAAAGGG
ATGTTCCACCAGTGGGATTTTAGGGGATTTTTTTCTGAGGCATAACTATC
CTATAGAGAAGGTCTGGAGAAAGTTTCAGCTATATCTTATTTTTTCCCGT
AAATTATGCTAAACAACCCCACTAATATGATAAAATTGTTTTTAAAAGAT
AACCTCGCACATATCACCACATTTTTTTTGGGTGAATTCACGCTGAAAGG
CTGCATGCAATCTATTGAAAAATTTTCACCTTGCACATGAATAAAATAAA
AGTAAATTTATGTATTTTTTCATTAAACCTTCGTTTAATTGAAGGTCATT
TAGAATAAAATCTACCGAAGATAAAGACCATTTAAGAATAGGTAGCTTGA
TCCTCAAAGAACTAAGATTTTTCTTCAAATTAGATAAAGGTTCGAATTAC
CGAGTGTATTTTGAATAACTTTCCAGCTGAGGGGATTAATGTTCGATTTA
CAGAAAAATTAATATAAGATTAATAGAGATTGGAATTGGAGAGATTTGAC
TGATTTGTAATCATGTCCCACATCGATTAAGTTCTTCTTCTAAAGCAATG
TTTAAGATATTTATGTATGATATTGCAATATATTGCGAACAAGAACTGCA
CGAATCTCGTCTGCACTTGCCCATCGATACTTAACCTCGGGTGAGAACCT
CTGTACCATGAAATCACGACAGATCATTATAAATTTGTTCCAAACGTTTC
GGCCTTATCTGAGGGGGCTAGACTATATGCAAGTGCCTTCGTCGTTTTTT
AAAAAGACCAATAAATCTTTGTTGATGCTCAGTTGTTCTAATTTTTTTTA
CATTTCAAATATTTTAGGGCAATATTGAAACGTTGTAGCATTGTAGCCGG
TGTTCACTTCTTTGAACCTCAATTCCGTGATTCCAGGCTTATGAATCTGC
TGAAAATGTTAATATTTTCATTGTTCTCTACCATGAGTGCATCAACTCTC
TTGTCAATTTTTGAGGGCTATAAAATAAAGCATCTTGCAACTTTTCACGC
TCTGGAATCTTAAATACACCCTTGTATGTCTCACAGCTCCGGCGGAACCG
TTTCCTCAGAGGGGATAAAAATTCCTTTTGAAATCTCAAAGGGGATAGCA
ATTTTAATATTCTATGGTTAAAAATCCAGTGGGGATGGTTTTGGAGTGCA
ATTTTTAAACATTGGATCTCGAATGGGGATAAAATCAAAGTAAAATTCCC
AATGGGGCTGAAATTCCAGGGTATTTTCCCATCGGGGACGAAACTTTTAC
GAAATTTTCCAGTGGGGCTTGGGTCCCAGCGGGTCTGTGACACAGGGGTG
TTTAAATTAAAAGGGAACTTTTGACGTTTTCTAATACTTTGCTTTACTCT
GCTTTCAGTTTGGACAATTTCCCAGAACTGCGCCATCCGCTAGGTAAAGT
AAAGAAATTCGAAGATATGTGCAAAATATCGGATACGATCAAAGAAAAAG
CCAAGGTGAGAGAGACAGATTATATTTTTGATCGTAAAACTTCTTCTTCT
AACTGTGACTGATTCAAATTTACCTTCACGCTTATATTTGGTCTGGGAGA
TTCGACGAAGTGGATCCATCCTGTTTATAGATGTTTAATTGCCCTATAAA
TTAAGAGCGACCCTTACAGGGCGACCCGATGGCTCCCTCTTTAGCTGCTG
AGCATGCGAGAGAAAGGCGGCATTTTAAGTACCATTTTGTAAATCTTTGC
TTTGACCTGGCTGGGGATCAAGTCCACAAGATTGCCCATAGTAGCTGGAT
GCTATACTTTCATGCTACAGCTTCTTATTTCAAAAATACTATTTCAGTAC
AGTTTCCAAACCAGTTTTTAGATAATTTACCATCTCCCGTCTATTAAGTA
CCTAACCATAATCTATTCCATTTGTAGGCGATCGCGGACAAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026021XLOC_026021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042149-exon-sc0003234-1575043694:6618..6731TCONS_00042149-exon-sc0003234-1575043694:6618..6731Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1575043694:5536..5722TCONS_00042149-exon-sc0003234-1575043694:5536..5722Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1575043694:4480..4624TCONS_00042149-exon-sc0003234-1575043694:4480..4624Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1575043694:677..773TCONS_00042149-exon-sc0003234-1575043694:677..773Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1575043694:235..254TCONS_00042149-exon-sc0003234-1575043694:235..254Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1510915933:6618..6731TCONS_00042149-exon-sc0003234-1510915933:6618..6731Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1510915933:5536..5722TCONS_00042149-exon-sc0003234-1510915933:5536..5722Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1510915933:4480..4624TCONS_00042149-exon-sc0003234-1510915933:4480..4624Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1510915933:677..773TCONS_00042149-exon-sc0003234-1510915933:677..773Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1510915933:235..254TCONS_00042149-exon-sc0003234-1510915933:235..254Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1491911889:6618..6731TCONS_00042149-exon-sc0003234-1491911889:6618..6731Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1491911889:5536..5722TCONS_00042149-exon-sc0003234-1491911889:5536..5722Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1491911889:4480..4624TCONS_00042149-exon-sc0003234-1491911889:4480..4624Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1491911889:677..773TCONS_00042149-exon-sc0003234-1491911889:677..773Clytia hemisphaericaexon
TCONS_00042149-exon-sc0003234-1491911889:235..254TCONS_00042149-exon-sc0003234-1491911889:235..254Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003234supercontigsc0003234:235..6731 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65262	3.31147	3.48461	0.0473871	5.1296	0.000122847	1.68269	3.42763	9.85637	4.68938	4.50023	3.9361	3.62513	5.62249	5.07216	4.93939	2.07955	2.99268	3.74045	0	0.933065	0	3.97765	2.20178	1.36824	1.35283	3.7177	3.86567	8.41709	2.00547
Blast
[Close]
BLAST of TCONS_00042149 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 4.948e-62
Identity = 91/167 (54.49%), Postives = 123/167 (73.65%), Query Frame = 1 
Query:   19 RIKKPITCKIRVYESIEKTVEYAKRLVRAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMWQKCLDNFPELRHPLGKVKKFEDMCKIS 519
            ++  P+TCKIRV+  I+KTV YA+ L +AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+  T V  VMSAEG L+NPA+F GR P  WE+ ++YL    ++P  LSYVR HLF++W   L    ELR  L KVK  E +  +S
Sbjct:  139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGIAAVS 305
The following BLAST results are available for this feature:
BLAST of TCONS_00042149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS1L4.948e-6254.49tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-li... [more]
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