TCONS_00042031 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042031
Unique NameTCONS_00042031
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1011

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=transcript|length=1011bp
gtgtgattaacgattaattgctctctacaggatgcaattaacgattaatt
gctctctttgagggcgtgccaaataagaaaaaataacccatcgtgcgatt
atccCATTTATAGAATCTATTATCTGTCACAAGTGTGACAAAATCTGCCT
TGACAACTGTGTTTTTTGTGAGCTTTGTAATACCTGGGTCCAtgcaaaat
gtttcaaaattacCAAGCGACAACTAACCATTCTCTCTCACTCTGAACTA
CCTTATTTTTGTCCAATTTGCATCTCTAACTCTATTCCCTTTAGTCATGT
TACCAATGCTCACATCGATCAATTCAACTCATCCTATAATCACAACATTC
CAACCCATGACTGTTCATATTGCGATAAGACAATAAAACATAATGAGATA
ATTAAATGTAAACTTGGTAAACATTTCTTACATAAAAAATGTGCTAATAT
TTCATCTCCTAACGACATTAACCGTGCCATCTGGTCATGCAATGACTGTC
TGAGATTCCCATTTCACAATTTAAACGACAGCCATTTTCATATAGAAACA
TTAACCAATGAAATTGAACATAATCTTAATCGTATAGCTAAAAtaaaatt
acataaaaaaatttctgaattaaAAATGTCTCTACCTAAAATCACAGTTT
CTGATCCATCAAGCCAAGATAAAGAAATTGATATAAATTTTAACTATTAC
GAAATCAGCAAGTTTGTTCAAATGTCCTCCATGCTGAAACAGGATGGAAA
CATGTCTTTTCTCCACACCAATATTCGTTCATATAACAAAAACTTCGATG
AACTCAATACTATCTTGTCTAAAGTACCCTACAAGTTTGATTTTATAGGT
TTGACTGAAACTTGGGATTCACCCTCAAGCCCAATAGAACCACAACAACT
TCCTGGCTACCATCCAGTTGAAGCTATAGAAGGTACATCCCAAAATGGTG
GAGTAATTGCCTACATTAAAGATGACATCATTttccaaagaagaaaaaat
ttggaagAAGA
Run BLAST on NCBI

protein sequence of TCONS_00042031-protein

>TCONS_00042031-protein ID=TCONS_00042031-protein|Name=TCONS_00042031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MSLPKITVSDPSSQDKEIDINFNYYEISKFVQMSSMLKQDGNMSFLHTNI
RSYNKNFDELNTILSKVPYKFDFIGLTETWDSPSSPIEPQQLPGYHPVEA
IEGTSQNGGVIAYIKDDIIFQRRKNLEE
Run BLAST on NCBI

transcript from alignment at sc0003159:9567..10577

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at sc0003159:9567..10577 (Clytia hemisphaerica)
TCTTcttccaaattttttcttctttggaaAATGATGTCATCTTTAATGTA
GGCAATTACTCCACCATTTTGGGATGTACCTTCTATAGCTTCAACTGGAT
GGTAGCCAGGAAGTTGTTGTGGTTCTATTGGGCTTGAGGGTGAATCCCAA
GTTTCAGTCAAACCTATAAAATCAAACTTGTAGGGTACTTTAGACAAGAT
AGTATTGAGTTCATCGAAGTTTTTGTTATATGAACGAATATTGGTGTGGA
GAAAAGACATGTTTCCATCCTGTTTCAGCATGGAGGACATTTGAACAAAC
TTGCTGATTTCGTAATAGTTAAAATTTATATCAATTTCTTTATCTTGGCT
TGATGGATCAGAAACTGTGATTTTAGGTAGAGACATTTttaattcagaaa
tttttttatgtaattttaTTTTAGCTATACGATTAAGATTATGTTCAATT
TCATTGGTTAATGTTTCTATATGAAAATGGCTGTCGTTTAAATTGTGAAA
TGGGAATCTCAGACAGTCATTGCATGACCAGATGGCACGGTTAATGTCGT
TAGGAGATGAAATATTAGCACATTTTTTATGTAAGAAATGTTTACCAAGT
TTACATTTAATTATCTCATTATGTTTTATTGTCTTATCGCAATATGAACA
GTCATGGGTTGGAATGTTGTGATTATAGGATGAGTTGAATTGATCGATGT
GAGCATTGGTAACATGACTAAAGGGAATAGAGTTAGAGATGCAAATTGGA
CAAAAATAAGGTAGTTCAGAGTGAGAGAGAATGGTTAGTTGTCGCTTGgt
aattttgaaacattttgcaTGGACCCAGGTATTACAAAGCTCACAAAAAA
CACAGTTGTCAAGGCAGATTTTGTCACACTTGTGACAGATAATAGATTCT
ATAAATGggataatcgcacgatgggttattttttcttatttggcacgccc
tcaaagagagcaattaatcgttaattgcatcctgtagagagcaattaatc
gttaatcacac

Coding sequence (CDS) from alignment at sc0003159:9567..10577

>TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0003159:9567..10577 (Clytia hemisphaerica)
TTcttccaaattttttcttctttggaaAATGATGTCATCTTTAATGTAGG
CAATTACTCCACCATTTTGGGATGTACCTTCTATAGCTTCAACTGGATGG
TAGCCAGGAAGTTGTTGTGGTTCTATTGGGCTTGAGGGTGAATCCCAAGT
TTCAGTCAAACCTATAAAATCAAACTTGTAGGGTACTTTAGACAAGATAG
TATTGAGTTCATCGAAGTTTTTGTTATATGAACGAATATTGGTGTGGAGA
AAAGACATGTTTCCATCCTGTTTCAGCATGGAGGACATTTGAACAAACTT
GCTGATTTCGTAATAGTTAAAATTTATATCAATTTCTTTATCTTGGCTTG
ATGGATCAGAAACTGTGATTTTAGGTAGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025918XLOC_025918Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042031-proteinTCONS_00042031-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042031-exon-sc0003159-1491911889:9567..10577TCONS_00042031-exon-sc0003159-1491911889:9567..10577Clytia hemisphaericaexon
TCONS_00042031-exon-sc0003159-1510915933:9567..10577TCONS_00042031-exon-sc0003159-1510915933:9567..10577Clytia hemisphaericaexon
TCONS_00042031-exon-sc0003159-1575043694:9567..10577TCONS_00042031-exon-sc0003159-1575043694:9567..10577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003159supercontigsc0003159:9567..10577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0724223	0.0662885	0.0601246	0	0	0	0	0.0469095	0.045916	0.0611507	0.0303283	0.0632135	0.025936	0.0823584	0.0339998	0.0351473	0.0475617	0	0	0.0649661	0	0	0	0	0.0630078	0.0670793	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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