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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=transcript|length=1011bp
gtgtgattaacgattaattgctctctacaggatgcaattaacgattaatt
gctctctttgagggcgtgccaaataagaaaaaataacccatcgtgcgatt
atccCATTTATAGAATCTATTATCTGTCACAAGTGTGACAAAATCTGCCT
TGACAACTGTGTTTTTTGTGAGCTTTGTAATACCTGGGTCCAtgcaaaat
gtttcaaaattacCAAGCGACAACTAACCATTCTCTCTCACTCTGAACTA
CCTTATTTTTGTCCAATTTGCATCTCTAACTCTATTCCCTTTAGTCATGT
TACCAATGCTCACATCGATCAATTCAACTCATCCTATAATCACAACATTC
CAACCCATGACTGTTCATATTGCGATAAGACAATAAAACATAATGAGATA
ATTAAATGTAAACTTGGTAAACATTTCTTACATAAAAAATGTGCTAATAT
TTCATCTCCTAACGACATTAACCGTGCCATCTGGTCATGCAATGACTGTC
TGAGATTCCCATTTCACAATTTAAACGACAGCCATTTTCATATAGAAACA
TTAACCAATGAAATTGAACATAATCTTAATCGTATAGCTAAAAtaaaatt
acataaaaaaatttctgaattaaAAATGTCTCTACCTAAAATCACAGTTT
CTGATCCATCAAGCCAAGATAAAGAAATTGATATAAATTTTAACTATTAC
GAAATCAGCAAGTTTGTTCAAATGTCCTCCATGCTGAAACAGGATGGAAA
CATGTCTTTTCTCCACACCAATATTCGTTCATATAACAAAAACTTCGATG
AACTCAATACTATCTTGTCTAAAGTACCCTACAAGTTTGATTTTATAGGT
TTGACTGAAACTTGGGATTCACCCTCAAGCCCAATAGAACCACAACAACT
TCCTGGCTACCATCCAGTTGAAGCTATAGAAGGTACATCCCAAAATGGTG
GAGTAATTGCCTACATTAAAGATGACATCATTttccaaagaagaaaaaat
ttggaagAAGA Run BLAST on NCBI protein sequence of TCONS_00042031-protein >TCONS_00042031-protein ID=TCONS_00042031-protein|Name=TCONS_00042031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MSLPKITVSDPSSQDKEIDINFNYYEISKFVQMSSMLKQDGNMSFLHTNI
RSYNKNFDELNTILSKVPYKFDFIGLTETWDSPSSPIEPQQLPGYHPVEA
IEGTSQNGGVIAYIKDDIIFQRRKNLEE Run BLAST on NCBI transcript from alignment at sc0003159:9567..10577 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at sc0003159:9567..10577 (Clytia hemisphaerica)
TCTTcttccaaattttttcttctttggaaAATGATGTCATCTTTAATGTA
GGCAATTACTCCACCATTTTGGGATGTACCTTCTATAGCTTCAACTGGAT
GGTAGCCAGGAAGTTGTTGTGGTTCTATTGGGCTTGAGGGTGAATCCCAA
GTTTCAGTCAAACCTATAAAATCAAACTTGTAGGGTACTTTAGACAAGAT
AGTATTGAGTTCATCGAAGTTTTTGTTATATGAACGAATATTGGTGTGGA
GAAAAGACATGTTTCCATCCTGTTTCAGCATGGAGGACATTTGAACAAAC
TTGCTGATTTCGTAATAGTTAAAATTTATATCAATTTCTTTATCTTGGCT
TGATGGATCAGAAACTGTGATTTTAGGTAGAGACATTTttaattcagaaa
tttttttatgtaattttaTTTTAGCTATACGATTAAGATTATGTTCAATT
TCATTGGTTAATGTTTCTATATGAAAATGGCTGTCGTTTAAATTGTGAAA
TGGGAATCTCAGACAGTCATTGCATGACCAGATGGCACGGTTAATGTCGT
TAGGAGATGAAATATTAGCACATTTTTTATGTAAGAAATGTTTACCAAGT
TTACATTTAATTATCTCATTATGTTTTATTGTCTTATCGCAATATGAACA
GTCATGGGTTGGAATGTTGTGATTATAGGATGAGTTGAATTGATCGATGT
GAGCATTGGTAACATGACTAAAGGGAATAGAGTTAGAGATGCAAATTGGA
CAAAAATAAGGTAGTTCAGAGTGAGAGAGAATGGTTAGTTGTCGCTTGgt
aattttgaaacattttgcaTGGACCCAGGTATTACAAAGCTCACAAAAAA
CACAGTTGTCAAGGCAGATTTTGTCACACTTGTGACAGATAATAGATTCT
ATAAATGggataatcgcacgatgggttattttttcttatttggcacgccc
tcaaagagagcaattaatcgttaattgcatcctgtagagagcaattaatc
gttaatcacac Coding sequence (CDS) from alignment at sc0003159:9567..10577 >TCONS_00042031 ID=TCONS_00042031|Name=TCONS_00042031|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0003159:9567..10577 (Clytia hemisphaerica)
TTcttccaaattttttcttctttggaaAATGATGTCATCTTTAATGTAGG
CAATTACTCCACCATTTTGGGATGTACCTTCTATAGCTTCAACTGGATGG
TAGCCAGGAAGTTGTTGTGGTTCTATTGGGCTTGAGGGTGAATCCCAAGT
TTCAGTCAAACCTATAAAATCAAACTTGTAGGGTACTTTAGACAAGATAG
TATTGAGTTCATCGAAGTTTTTGTTATATGAACGAATATTGGTGTGGAGA
AAAGACATGTTTCCATCCTGTTTCAGCATGGAGGACATTTGAACAAACTT
GCTGATTTCGTAATAGTTAAAATTTATATCAATTTCTTTATCTTGGCTTG
ATGGATCAGAAACTGTGATTTTAGGTAGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042031-exon-sc0003159-1491911889:9567..10577 | TCONS_00042031-exon-sc0003159-1491911889:9567..10577 | Clytia hemisphaerica | exon |
| TCONS_00042031-exon-sc0003159-1510915933:9567..10577 | TCONS_00042031-exon-sc0003159-1510915933:9567..10577 | Clytia hemisphaerica | exon |
| TCONS_00042031-exon-sc0003159-1575043694:9567..10577 | TCONS_00042031-exon-sc0003159-1575043694:9567..10577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003159 | supercontig | sc0003159:9567..10577 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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