TCONS_00041669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041669
Unique NameTCONS_00041669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041669 ID=TCONS_00041669|Name=TCONS_00041669|organism=Clytia hemisphaerica|type=transcript|length=306bp
NNCTGTTCCACATGAAGATTTTGTGTTTGCTAGGTTTGGATCGAATAGGA
TGACATACCATGTCAAGAAGAACAGCTGTTTCGTGGTCACTGAAACCTGG
GTGAGAGGCTATTCTGCTGACAAAAGTTGGTCGATTTGTTGCGATGATGT
CAAGAGTGTTTTCCTGACGTGTAGGGAACTTGACTTGCTGCTCTAAGCCA
ATATCGTCAAAAGTCTCGAGGAAGCCTTCGCTGATGttctttttgtaatt
attgCTAACAATAGTGTTATTGTTCCAGTCTATATCTGGAAGATTTGTAT
CACCAN
Run BLAST on NCBI

protein sequence of TCONS_00041669-protein

>TCONS_00041669-protein ID=TCONS_00041669-protein|Name=TCONS_00041669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
GDTNLPDIDWNNNTIVSNNYKKNISEGFLETFDDIGLEQQVKFPTRQENT
LDIIATNRPTFVSRIASHPGFSDHETAVLLDMVCHPIRSKPSKHKIFMWN
X
Run BLAST on NCBI

transcript from alignment at sc0002964:6141..6446

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041669 ID=TCONS_00041669|Name=TCONS_00041669|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at sc0002964:6141..6446 (Clytia hemisphaerica)
NTGGTGATACAAATCTTCCAGATATAGACTGGAACAATAACACTATTGTT
AGcaataattacaaaaagaaCATCAGCGAAGGCTTCCTCGAGACTTTTGA
CGATATTGGCTTAGAGCAGCAAGTCAAGTTCCCTACACGTCAGGAAAACA
CTCTTGACATCATCGCAACAAATCGACCAACTTTTGTCAGCAGAATAGCC
TCTCACCCAGGTTTCAGTGACCACGAAACAGCTGTTCTTCTTGACATGGT
ATGTCATCCTATTCGATCCAAACCTAGCAAACACAAAATCTTCATGTGGA
ACAGNN

Coding sequence (CDS) from alignment at sc0002964:6141..6446

>TCONS_00041669 ID=TCONS_00041669|Name=TCONS_00041669|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0002964:6141..6446 (Clytia hemisphaerica)
GGTGATACAAATCTTCCAGATATAGACTGGAACAATAACACTATTGTTAG
caataattacaaaaagaaCATCAGCGAAGGCTTCCTCGAGACTTTTGACG
ATATTGGCTTAGAGCAGCAAGTCAAGTTCCCTACACGTCAGGAAAACACT
CTTGACATCATCGCAACAAATCGACCAACTTTTGTCAGCAGAATAGCCTC
TCACCCAGGTTTCAGTGACCACGAAACAGCTGTTCTTCTTGACATGGTAT
GTCATCCTATTCGATCCAAACCTAGCAAACACAAAATCTTCATGTGGAAC
AGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025602XLOC_025602Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041669-proteinTCONS_00041669-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041669-exon-sc0002964-1491911889:6141..6446TCONS_00041669-exon-sc0002964-1491911889:6141..6446Clytia hemisphaericaexon
TCONS_00041669-exon-sc0002964-1510915933:6141..6446TCONS_00041669-exon-sc0002964-1510915933:6141..6446Clytia hemisphaericaexon
TCONS_00041669-exon-sc0002964-1575043694:6141..6446TCONS_00041669-exon-sc0002964-1575043694:6141..6446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002964supercontigsc0002964:6141..6446 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.12126	2.71322	4.41671	7.51377	7.36812	5.46508	4.69901	3.61868	1.3554	2.58108	4.24608	3.09856	1.66152	1.76708	1.09118	2.62081	0.646283	2.41413	1.55411	2.03284	0.967201	2.09223	0.838137	0	1.17725	2.80177	2.50583	0	0.40567	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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