TCONS_00041600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041600
Unique NameTCONS_00041600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041600 ID=TCONS_00041600|Name=TCONS_00041600|organism=Clytia hemisphaerica|type=transcript|length=920bp
CGCGTCAGTTCAGAACTCGACGGGTCGTGTTGCTAGTCGCCGGTTTAAAG
AACCGGTTTTTCGGATTTATCGGATTATAATTTCGGTAAATCTGGTCTGC
AGATTTCACAAATTTCACTGGATTCGTAAAAGACGCGCTAAAAATGAATC
ACATGGTTCTTCAGTTCCAAGCAGTTAACAGTGTTAATATAAAGGTCTAA
AAATGGATGAAATTAATTCCAGGATGAAAGAATTGGAGTACAGATTGACT
CCAAATTCAAATAACTTTCGtACCAAGTTTCAACCAAACGAGGGGGGACC
ACCCAAGAAGAAGTTTTACAAGCCAAAGGATACATGGACTGCAAACTTTT
ATTGTTTAGCAGAAATGGGTGCTACCCACACTCCTTCCTCTGCCGAACAC
CAAACATTTACAGATGCTGGTCTTGGTAAAAAAAGGATACAGCTGAATAA
CAAGGCTAGCCATTTAGATTTGGTGCTAATGTTAGAGGAGGAATATCCAA
AACTTGCAACCACCAATGGGCGCTTTATGCTGCATAGAGCAGAAGGTGGG
GGCAGTGGTAAAAGGAGGCTAATCAGAATTGCAACTGGACCATGTGGATA
CTCTGTGCCTTATTTGAAAGATTCATGCAACATTGGGCATGCAACGATCT
ATGTAGTACCAATTCAAGAATCTCTAGATATGACAAAAATAGTCACACGT
TCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTTGTCGA
GCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGAACCCTGGAA
ATGAACAGAAGGAGAATGGGCAGAATGATAAAGAGTGAGAGTTATGagat
tttatttgatttagATAAAGTTAGATTCACTCTGTCTCTTGGATAAGCTT
CTTTTATTTCTACTCTGCTT
Run BLAST on NCBI

protein sequence of TCONS_00041600-protein

>TCONS_00041600-protein ID=TCONS_00041600-protein|Name=TCONS_00041600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MDEINSRMKELEYRLTPNSNNFRTKFQPNEGGPPKKKFYKPKDTWTANFY
CLAEMGATHTPSSAEHQTFTDAGLGKKRIQLNNKASHLDLVLMLEEEYPK
LATTNGRFMLHRAEGGGSGKRRLIRIATGPCGYSVPYLKDSCNIGHATIY
VVPIQESLDMTKIVTRSYCSPTVECIFCGDFVELLLLQEHTKICSKNPGN
EQKENGQNDKE
Run BLAST on NCBI

transcript from alignment at sc0002930:1310..4966+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041600 ID=TCONS_00041600|Name=TCONS_00041600|organism=Clytia hemisphaerica|type=transcript|length=3657bp|location=Sequence derived from alignment at sc0002930:1310..4966+ (Clytia hemisphaerica)
CGCGTCAGTTCAGAACTCGACGGGTCGTGTTGCTAGTCGCCGGTTTAAAG
AACCGGTTTTTCGGATTTATCGGATTATAATTTCGGTAAATCTGGTCTGC
AGATTTCACAAATTTCACTGGATTCGTAAAAGACGCGCTAAAAATGAATC
ACATGGTTCTTCAGTTCCAAGCAGTTAACAGTGTTAATATAAAGGTCTAA
AAATGGATGAAATTAATTCCAGGATGAAAGAATTGGAGTACAGATTGACT
CCAAATTCAAATAACTTTCGGTAAGGatgtttttatactttttattcATT
TACAGGGGTAATCCTACTGTCGCTAGTGTTGTGTGTTGACCAACCTTTTA
CAGACCTTGTGTTTTATGGaaggaaattttcattttatctcTTGCAAATA
TAAAGGGGTCACTACCCCTCCCTTACCCTAGTTTCTGAAGCACAGGAGTT
GCGGGAGAAAAATGGAATTGCAGGATTGGTGTATTAGGAAATTCGAACTT
GACTTGTCTGCGAGTCTGCGAGTGCGATTATTTACGTGGTGGACCCCGTA
TaaagttgaagttggtttgatattctacgtttgacgtttgatattCGCTT
GATATttgtttgatattctcaaatttgattttaagtgTGGCGCTTACAAA
GGGAGGCGCTTAATAGAGGGCAGcacttattttgaattttagaaattCGT
TTTCCTGAGtttattccaaaaatttgtATCACGCTTGGGTTCCGAAGAGG
ATTTTTCTGCGGTTTTAACTATGTTTTAAGGCTATAATTATAAGTAGTTA
GCGATTGCATTTCCAATTGATTCACTTGTTTGTAGAGCTCTCCATNggtc
gtggcttcttcacaaagacgaaagacagatccggacttatttcgtacttt
ccagtctcttatTCGTAGTTtctctgactttctggttctttctgagttat
tttctatgttttctaacttactgaatgacttaccgacagatcgccaccgg
tgggattcaaacccactaaatgcaaagttctgatgttttgaaacccattg
ccttatccactgcgccacggattcatgccaggataCCGCTTCTGATGGCT
ATTTAAATactgtacaaactgcagaccagactgtattaagagaaaatcac
aaaaaagtgcttgtttcgagctccaaccctaaccctaactgataataatc
caattcctagccaatctgatacgtaaccacacccaaaccacacccgtACC
CAagcctaccaggtcgcctgcaggtcctgacactattcccgcataccgga
tccgaaaaataaatacatgtctttcgtctttacgaagaagccttcaccgt
aGAGCTCTCCATTGCAGTTTATCctttaaatttctttatttttccttcat
tttctAATTGGAGGGCGACACTAATAACAAAAGGGTGGTGTTTATATTGA
AATCCATATTTTAGTTGAGGCACTTAGGAAGGCGTTTATAGAGTCTGGCA
CTAAATAGAGGAAAGACGGTATCTGTTTGGAAATAGTACAAAATTTTGCT
AAATCGTGAATTTTGATTTTACCACTTAAAATTTATAAAGTTgtgaaaat
cgcaaaaattaagTCCCGCGAACAcaactttaaaaaattatttttgcgac
tgacaaaattagttcctttaaggtatttacCTGTAAATTATTAGAGCATC
CCACAGTATAGTATTAaagtaaagaaaagaaaaaagaaacttttgtaaCA
AATGAGATGAATTTGacattaattttctttcttagtACCAAGTTTCAACC
AAACGAGGGGGGACCACCCAAGAAGAAGTTTTACAAGCCAAAGGATACAT
GGACTGCAAACTTTTATTGTTTAGCAGAAATGGGTGCTACCCACACTCCT
TCCTCTGCCGAACACCAAACATTTACAGATGCTGGTCTTGGTAAAAAAAG
GATACAGCTGAATAACAAGGCTAGCCATTTAGATTTGGTGCTAATGTTAG
AGGAGGAATATCCAAAACTTGCAACCACCAATGGGCGCTTTATGCTGCAT
AGAGCAGAAGGTGGGGGCAGTGGTAAAAGGAGGCTAATCAGAATTGCAAC
TGGACCATGTGGATACTCTGTGCCTTATTTGAAAGATTCATGCAACATTG
GGCATGCAACGATCTATGTAGTACCAATTCAAGAATCTCTAGATATGACA
AAAATAGTCACAGTAAGTTTTAAGTTCTTTAACCAATCATCATGTGATTG
TCTATTAGTTGTACTCAAAAAGTTTTAGTTTCAAATATTGAGTTTTAGGA
GCTTTTTCTGCTATTGAAAAGGTTTTTGTTTACAAGTTGGAATAAGCAAG
AAGAAATGTCACTTTTCTTCCTAAGAATTGGCAAATGCTCATCGCTAATT
AATCTCAAGtacagttgagctagaatctggaGTGCCTAGTCTGTGTGTCC
GCCAAAAATTTCAATCAGGAGTATGTGCTGCCCGACTTTTGGCAGTCAAA
CACTTAGAGGGACCAAAAGGGGTtgaattttcatgaattttatgACCCTT
ATCAggacttttttctaaaaatttagcCTGTTGAGGGTCatttaattttt
acaaattttgaacatccaAAAAGTCACCATCAAGGGCGACACACAATACC
CGTACCCTCcgtttgcctaagtgcccccccccctgctgaAGTTTACGTTG
CGcccttcaaattattttaaagttaCTAAAGTTTTGAGCCCAATATGGTA
TGCATGTTCTACACTACCTTAAGGGGATTATTATTCGTggagaaaatatt
ttgcagaTTACTTGTAAGTTTTGGCCTTTTTTGGCTTGGGAAAGCCAAAC
TCGTGTCAAATTTTctcatgaaaattgaaaaactcctagtaaattgaagg
aaaatagtaaaaaaaaatcaaggttATATTGCGCAAGCTGTCTTGCAAAA
ATTAATACAAAAGGaatcaaattgattttaaaaaatgttttatttcagCG
TTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTTGTCG
AGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGgtaactttt
ttaaacttttgaataaaGAGCTTTTTAATTTGATAATAAAAGTTACAGGG
GTTTCATTAAAACATGGTACCATAGGGTACCCTGATATGGTAGACCTTCT
GGTATACCCTGccctgaaaaaagtttggagtcaatgaaaaatatataaag
tcaCAATTAAATGGTGatggttttgtgcttgttgaaaaaataactttgac
tTGAGAAAtctcacttgaaaaaaggttaaaaatccCTTATTTAATTTCTC
AccaatagctcctgaaatatttcttttctcaaGTTATTCAACCTATGCCA
TTAAAACCTTTTCATCTTTGATCCACTGGGAGAGgataatttgacatttt
ttcccTTTAGGAAGTTTAATTTTCTTATGTCAAACTGTTTTCATTCATta
ttttatgttatttttcttattcgTTAGAACCCTGGAAATGAACAGAAGGA
GAATGGGCAGAATGATAAAGAGTGAGAGTTATGagattttatttgattta
gATAAAGTTAGATTCACTCTGTCTCTTGGATAAGCTTCTTTTATTTCTAC
TCTGCTT

Coding sequence (CDS) from alignment at sc0002930:1310..4966+

>TCONS_00041600 ID=TCONS_00041600|Name=TCONS_00041600|organism=Clytia hemisphaerica|type=CDS|length=2544bp|location=Sequence derived from alignment at sc0002930:1310..4966+ (Clytia hemisphaerica)
ATGGATGAAATTAATTCCAGGATGAAAGAATTGGAGTACAGATTGACTCC
AAATTCAAATAACTTTCGtACCAAGTTTCAACCAAACGAGGGGGGACCAC
CCAAGAAGAAGTTTTACAAGCCAAAGGATACATGGACTGCAAACTTTTAT
TGTTTAGCAGAAATGGGTGCTACCCACACTCCTTCCTCTGCCGAACACCA
AACATTTACAGATGCTGGTCTTGGTAAAAAAAGGATACAGCTGAATAACA
AGGCTAGCCATTTAGATTTGGTGCTAATGTTAGAGGAGGAATATCCAAAA
CTTGCAACCACCAATGGGCGCTTTATGCTGCATAGAGCAGAAGGTGGGGG
CAGTGGTAAAAGGAGGCTAATCAGAATTGCAACTGGACCATGTGGATACT
CTGTGCCTTATTTGAAAGATTCATGCAACATTGGGCATGCAACGATCTAT
GTAGTACCAATTCAAGAATCTCTAGATATGACAAAAATAGTCACACGTTC
TTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTTGTCGAGC
TTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGAACCCTGGAAAT
GAACAGAAGGAGAATGGGCAGAATGATAAAGAGTGAATGGATGAAATTAA
TTCCAGGATGAAAGAATTGGAGTACAGATTGACTCCAAATTCAAATAACT
TTCGtACCAAGTTTCAACCAAACGAGGGGGGACCACCCAAGAAGAAGTTT
TACAAGCCAAAGGATACATGGACTGCAAACTTTTATTGTTTAGCAGAAAT
GGGTGCTACCCACACTCCTTCCTCTGCCGAACACCAAACATTTACAGATG
CTGGTCTTGGTAAAAAAAGGATACAGCTGAATAACAAGGCTAGCCATTTA
GATTTGGTGCTAATGTTAGAGGAGGAATATCCAAAACTTGCAACCACCAA
TGGGCGCTTTATGCTGCATAGAGCAGAAGGTGGGGGCAGTGGTAAAAGGA
GGCTAATCAGAATTGCAACTGGACCATGTGGATACTCTGTGCCTTATTTG
AAAGATTCATGCAACATTGGGCATGCAACGATCTATGTAGTACCAATTCA
AGAATCTCTAGATATGACAAAAATAGTCACACGTTCTTACTGCTCTCCTA
CTGTGGAATGTATCTTCTGTGGGGACTTTGTCGAGCTTCTATTGTTACAG
GAACATACCAAAATCTGCTCTAAGAACCCTGGAAATGAACAGAAGGAGAA
TGGGCAGAATGATAAAGAGTGAATGGATGAAATTAATTCCAGGATGAAAG
AATTGGAGTACAGATTGACTCCAAATTCAAATAACTTTCGtACCAAGTTT
CAACCAAACGAGGGGGGACCACCCAAGAAGAAGTTTTACAAGCCAAAGGA
TACATGGACTGCAAACTTTTATTGTTTAGCAGAAATGGGTGCTACCCACA
CTCCTTCCTCTGCCGAACACCAAACATTTACAGATGCTGGTCTTGGTAAA
AAAAGGATACAGCTGAATAACAAGGCTAGCCATTTAGATTTGGTGCTAAT
GTTAGAGGAGGAATATCCAAAACTTGCAACCACCAATGGGCGCTTTATGC
TGCATAGAGCAGAAGGTGGGGGCAGTGGTAAAAGGAGGCTAATCAGAATT
GCAACTGGACCATGTGGATACTCTGTGCCTTATTTGAAAGATTCATGCAA
CATTGGGCATGCAACGATCTATGTAGTACCAATTCAAGAATCTCTAGATA
TGACAAAAATAGTCACACGTTCTTACTGCTCTCCTACTGTGGAATGTATC
TTCTGTGGGGACTTTGTCGAGCTTCTATTGTTACAGGAACATACCAAAAT
CTGCTCTAAGAACCCTGGAAATGAACAGAAGGAGAATGGGCAGAATGATA
AAGAGTGAATGGATGAAATTAATTCCAGGATGAAAGAATTGGAGTACAGA
TTGACTCCAAATTCAAATAACTTTCGtACCAAGTTTCAACCAAACGAGGG
GGGACCACCCAAGAAGAAGTTTTACAAGCCAAAGGATACATGGACTGCAA
ACTTTTATTGTTTAGCAGAAATGGGTGCTACCCACACTCCTTCCTCTGCC
GAACACCAAACATTTACAGATGCTGGTCTTGGTAAAAAAAGGATACAGCT
GAATAACAAGGCTAGCCATTTAGATTTGGTGCTAATGTTAGAGGAGGAAT
ATCCAAAACTTGCAACCACCAATGGGCGCTTTATGCTGCATAGAGCAGAA
GGTGGGGGCAGTGGTAAAAGGAGGCTAATCAGAATTGCAACTGGACCATG
TGGATACTCTGTGCCTTATTTGAAAGATTCATGCAACATTGGGCATGCAA
CGATCTATGTAGTACCAATTCAAGAATCTCTAGATATGACAAAAATAGTC
ACACGTTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTT
TGTCGAGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGAACC
CTGGAAATGAACAGAAGGAGAATGGGCAGAATGATAAAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025536XLOC_025536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041600-exon-sc0002930-1491911889:1310..1579TCONS_00041600-exon-sc0002930-1491911889:1310..1579Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1510915933:1310..1579TCONS_00041600-exon-sc0002930-1510915933:1310..1579Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1575043694:1310..1579TCONS_00041600-exon-sc0002930-1575043694:1310..1579Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1491911889:3095..3521TCONS_00041600-exon-sc0002930-1491911889:3095..3521Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1510915933:3095..3521TCONS_00041600-exon-sc0002930-1510915933:3095..3521Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1575043694:3095..3521TCONS_00041600-exon-sc0002930-1575043694:3095..3521Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1491911889:4308..4400TCONS_00041600-exon-sc0002930-1491911889:4308..4400Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1510915933:4308..4400TCONS_00041600-exon-sc0002930-1510915933:4308..4400Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1575043694:4308..4400TCONS_00041600-exon-sc0002930-1575043694:4308..4400Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1491911889:4837..4966TCONS_00041600-exon-sc0002930-1491911889:4837..4966Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1510915933:4837..4966TCONS_00041600-exon-sc0002930-1510915933:4837..4966Clytia hemisphaericaexon
TCONS_00041600-exon-sc0002930-1575043694:4837..4966TCONS_00041600-exon-sc0002930-1575043694:4837..4966Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041600-proteinTCONS_00041600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002930supercontigsc0002930:1310..4966 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.648679	0.810318	0.22599	0.165822	2.9854	2.72722	2.1687	1.53432	1.3701	1.64367	1.76892	1.19797	1.14473	1.45838	1.44215	1.52041	1.47626	0.729011	0.732135	0.648217	0.596272	0.447132	0.22885	0.725035	1.33547	1.80561	0.31131	0.438122	0.16615	0.451415
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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