TCONS_00041586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041586
Unique NameTCONS_00041586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041586 ID=TCONS_00041586|Name=TCONS_00041586|organism=Clytia hemisphaerica|type=transcript|length=376bp
CCCGCAAAGTGCTATGTTTCGCTTGATATTCTgaagtaaaagttttctta
tcGAGACTGAAGATTTTGGCATTATAAAGTAGAAATTTAATGGTATTAGC
CCATCGTGACTGGAATCTACCACATTTTAGCGGAAATAGAGACCTCGTTT
TCTCCTTTAGTCACCAAAAAGATGATAATGTGTAGAGGAGGAATTTTATA
AACATAAAATTCGAGAGGCGGTTTGTTTTGTGTCCCTGGTTGTAACGGCG
GCCATGATGTAGGTATCATGTCAGCAATAATGGCAGAAACAGACATCATG
GGGGACACTGCAGGTCCCCCAGCCAAAAAAGCCAGATCTGGTGAGCTTGA
AACACCTACGGTTGATGCAGGTATAT
Run BLAST on NCBI

transcript from alignment at sc0002923:15324..15898+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041586 ID=TCONS_00041586|Name=TCONS_00041586|organism=Clytia hemisphaerica|type=transcript|length=575bp|location=Sequence derived from alignment at sc0002923:15324..15898+ (Clytia hemisphaerica)
CCCGCAAAGTGCTATGTTTCGCTTGATATTCTgaagtaaaagttttctta
tcGAGACTGAAGATTTTGGCATTATAAAGTAGAAATTTAATGGTATTAGC
CCATCGTGACTGGAATCTACCACATTTTAGCGGAAATAGAGACCTCGTTT
TCTCCTTTAGTCACCAAAAAGATGATAATGTGTAGAGGAGGAATTTTATA
AACATAAAATTCGAGAGGCGGTTTGTTTTGTGTCCCTGGTTGTAACGGCG
GCCATGATGGTATTTTACacattgtttatttttctttaatcgcatttttg
aagatttcgaccTGTGTTTTGCTCTTCTTTGAGAATATTCGCAATAATTT
GGTCTGAATAATTGTTCCATCGGCTTAAAATCCTTAAACGGGCTGTTAAT
TAGTTGATTTCACAAATTGTATACCCTTTCAAATTAATTACCCACTTTTC
TTTACCAGTAGGTATCATGTCAGCAATAATGGCAGAAACAGACATCATGG
GGGACACTGCAGGTCCCCCAGCCAAAAAAGCCAGATCTGGTGAGCTTGAA
ACACCTACGGTTGATGCAGGTATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025525XLOC_025525Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041586-exon-sc0002923-1491911889:15324..15582TCONS_00041586-exon-sc0002923-1491911889:15324..15582Clytia hemisphaericaexon
TCONS_00041586-exon-sc0002923-1510915933:15324..15582TCONS_00041586-exon-sc0002923-1510915933:15324..15582Clytia hemisphaericaexon
TCONS_00041586-exon-sc0002923-1575043694:15324..15582TCONS_00041586-exon-sc0002923-1575043694:15324..15582Clytia hemisphaericaexon
TCONS_00041586-exon-sc0002923-1491911889:15782..15898TCONS_00041586-exon-sc0002923-1491911889:15782..15898Clytia hemisphaericaexon
TCONS_00041586-exon-sc0002923-1510915933:15782..15898TCONS_00041586-exon-sc0002923-1510915933:15782..15898Clytia hemisphaericaexon
TCONS_00041586-exon-sc0002923-1575043694:15782..15898TCONS_00041586-exon-sc0002923-1575043694:15782..15898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002923supercontigsc0002923:15324..15898 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39907	2.34007	5.77289	9.70178	68.1381	55.7633	28.6167	41.574	14.9315	24.7436	22.0137	19.1713	20.5251	19.7716	15.2396	23.1255	21.5297	18.9978	16.2598	22.5475	25.0589	23.0318	8.03818	12.2237	23.5051	29.094	30.2171	21.0634	18.5226	16.3368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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