TCONS_00041568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041568
Unique NameTCONS_00041568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041568 ID=TCONS_00041568|Name=TCONS_00041568|organism=Clytia hemisphaerica|type=transcript|length=416bp
cttgagacaggggtattctaTGGACgctaaacgtcaaaacaacgttctTT
TATGATGTCCGTAAAACAACGGAATATGTACACTGGGTTTTTTGAGCGAA
TTTTCTATCAACCTAACCTAGCCTGTGAATATGAAACAGGGGTGTGGGTA
TGCTAGACTCTTCTGGGGTTAAAAGAAATACGCACCTGCTGGGTATGATA
TAATTCTGCTTTTAAATTCAATGCTATCTATCGTAACCGCGGAATATAAC
GACCATATAACTAACGACCATGTGTTTGTTGACTCTATCGATgcttcgat
gaaaatttgatattttcgtaaGTTGTCCAGTTTCTCTAATGCtcttcttt
tttattcatttatttacttctccctttttattttcctctggAACGAAACG
CAAgcgtcaaatttaa
Run BLAST on NCBI

transcript from alignment at sc0002914:4514..4929

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041568 ID=TCONS_00041568|Name=TCONS_00041568|organism=Clytia hemisphaerica|type=transcript|length=416bp|location=Sequence derived from alignment at sc0002914:4514..4929 (Clytia hemisphaerica)
ttaaatttgacgcTTGCGTTTCGTTccagaggaaaataaaaagggagaag
taaataaatgaataaaaaagaagaGCATTAGAGAAACTGGACAACttacg
aaaatatcaaattttcatcgaagcATCGATAGAGTCAACAAACACATGGT
CGTTAGTTATATGGTCGTTATATTCCGCGGTTACGATAGATAGCATTGAA
TTTAAAAGCAGAATTATATCATACCCAGCAGGTGCGTATTTCTTTTAACC
CCAGAAGAGTCTAGCATACCCACACCCCTGTTTCATATTCACAGGCTAGG
TTAGGTTGATAGAAAATTCGCTCAAAAAACCCAGTGTACATATTCCGTTG
TTTTACGGACATCATAAAagaacgttgttttgacgtttagcGTCCAtaga
atacccctgtctcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025510XLOC_025510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041568-exon-sc0002914-1491911889:4514..4929TCONS_00041568-exon-sc0002914-1491911889:4514..4929Clytia hemisphaericaexon
TCONS_00041568-exon-sc0002914-1510915933:4514..4929TCONS_00041568-exon-sc0002914-1510915933:4514..4929Clytia hemisphaericaexon
TCONS_00041568-exon-sc0002914-1575043694:4514..4929TCONS_00041568-exon-sc0002914-1575043694:4514..4929Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002914supercontigsc0002914:4514..4929 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.875079	0.690973	0.20324	1.72962	0.462258	0.569552	0.702977	0.714645	1.22094	0.214749	2.08369	0.526872	1.13706	0.937174	0.521169	0.65629	1.28662	1.04219	1.18408	0.417795	1.17769	0.281039	0.606524	0	0.736056	1.97074	1.935	2.58817	1.18295	1.6616
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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