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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL70699_cuf6 >transcript:BL70699_cuf6-protein ID=transcript:BL70699_cuf6-protein|Name=transcript:BL70699_cuf6|organism=Branchiostoma lanceolatum|type=polypeptide|length=126bp
MHQCIWKLIDSLFCEKTQNRTFPAWATPEVYDKLTELTSFNPRTHSSDNH
KARIRLRSGPLLGAMVXSLLYSTTRPWQVCCWRWAPLTTCILLTAHASWW
NCTRRILETFSWRCGTETTAPTTRTC Run BLAST on NCBI mRNA from alignment at Sc0000205:285718..291118+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL70699_cuf6 ID=transcript:BL70699_cuf6|Name=transcript:BL70699_cuf6|organism=Branchiostoma lanceolatum|type=mRNA|length=5401bp|location=Sequence derived from alignment at Sc0000205:285718..291118+ (Branchiostoma lanceolatum)
CGGCAGCAGTTTGAGCTCGGACAATTTCTCAGAAGTAGATACGTCGGATC
AAACTTCCTCAACTCATCATACAGCAGATATCAGGTAAAATTACCGAATT
TCAAGCTTACTAAGGTGTAAATCATGCACATTGATCGTACACACTTGTCA
ACTGTTGTAGATGAAAGTTTACTGTTGAGGCTGTAGGTCCAAGTAAACAG
TTCACATTCCTCAAACTCAGGTTTGGATACACACGGCACCCCGATGAGAT
TCCTGAAGGCTAATCCTTGCGTATGTACACTTGCAGATTCAGATTTACAC
TTGTATATTCACACTCACAGGTTCAGATTTACACTTGTGTATTCACGCTC
ACAGATTCAGATGTACACGTACAGGTTTTCACACTTACAGGTTCAGGTTT
GGAGCACGGATACGGACAGGACCCTGATGAGTGCCCAGGCTAATCTGGCA
GGTTTGTTCCCTCCCGCTGGAGATCAAGTCTGGAATTCAGACATCCCCTG
GCAGCCGATTCCTGTCCACACTAGACCTGCCAACGATGACGTGGTAAGTT
CTTGATTCTTATCCACACTATAACTGTACAAAATATGCCGTTAGAAGATT
CCTAATTCAAATTGGTGTTGATGTATCTGCACCCAGTTTGTTCCGTAAAC
TGATAGAGCTGTGACGAAGCTGCGCTCGGTGTAACATTTTGCATCAAAGA
ATCAAGAACTAGATACATTTATTTTAAATCTTCTACTCTCTGGAGAATTG
TTCGGATGTCAGAGTAGATCTTTCTGGGAGATTGGTGTCTTCTTGAAGTC
TGAGCAAGATAATGTTCATCGGTTTATCATGTAGCAAATAACATAATAAA
CAAATAACATATTTCAGTTGCTAGGAATGCCGCCATGTCCTAGACATGAC
TATTTAACCAGGGAGTTCCAGAGGACAGACCCGGAGTACCTGAAGATGGA
AAAAGACAACAAGGTAAGAGCGTCACTGTGAGTTCTTGTGCCATTTGCTT
GTGTAATTATGTACTATGGCATTCACGTTTTACCTGTACATGTACATGTA
CAACGTCTAGTGTAATATTCCATAGTAGCTATGATAGCTTACTTTGTCTT
GTGGTCGGGACATTATAGCCGACCGGGCTGGAAGAAAAATTGACCCGGAT
CAAAATGCTTAACGAATGTAACCCGATTCCTCGCCTGAACACGCCGGGAC
ACCTACAGGGCAGCGCGAAGGGAACTTTTGATTTGTGACCATGACAGCTG
ACTTCAGTTTTTGGCCGGAGCTACACCCCTACGGGCACCGGCGCAATTGT
GACCACAGTATTACCGTTTGCTCCTAATATGATGGACTGAGTGGAATTGT
CTTTTCCTACTTCACAGAGCTTTGTTTTCTTTATTTCCTGCAGGACTTCT
TCGAGTACTTAGCACTGTGGACAGGACTGCCAGAAGACAAAATGCACCAG
TGTATCTGGAAATTGATAGATTCTTTGTTTTGCGAGGTATGCTGTACATT
TGGTTTGCTAGGGCCGTCACAGCCTAGTTACCATGCTGGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATGAACCTTAGAAATTAGACC
CATACATTTTAATGTGTATTACATATCCATCACATGAATGCAATTTACAT
GTAATTCAAATTTACATTGTAACGTCAACGTTTAACCATCTAACATGGCT
TGCAGAGTTCACGTCATAGTCACGTGAATCTAGATGCTCTATATCAAGTT
CCGGGGTACCAGTGATTTCAATGGCGCGTGCTCGTGCACTAACAATAGTT
TAGTTATCTTCGCCGAGTACTTGTACTCGGAGAAGATTATGTTTTCGGTT
GAAAAATCTGTTGGGTGGGTCTGAATGTATGTCAGGAGCATAACTCAAGA
AAGCTTCNAAAAGCTTTTGATGGATCCGTATGATATTTAGTGGATGGGTA
GGGTTTACAGAAAGGAAGGTCAAGTTCGATAATGGGCCTTCTAGCGAGGA
CCTAAGGTACTGCAGCGGAGCTTCAAAATTTAGGGGCATATTTTCTGAAA
GTGCTATGGTCATGATTTTTGTGTGGTAGATAGTTCATGCCACAGAAAGT
AAGTTCTGTAAATTTTGGCCCCCTAGCGGCTTGTTAAGAACTGCAGTGGG
TGTTTTTGTTTTGACATTCGGACATGAATAACTTGAGAAGGGGTCGACAG
ATCGTCGTGATGTTCGGTATGTAGAGAGCTCAGATGGTGCTTTACATTAT
CAATGACTAGTTATGCAAACCAGGAACTAATTTGCATAATTAGTAAGGAA
AGTTTGTAACCCACTGCATTTCAATGGGACATGGGACAGTGTCAGGTCAT
GTAAACAAATGGCCTTGCATAAACGTACATGTAGGTCAAATAAATAAACT
ATTCTCCAAGCAGAGGTGTGGGTCCTGCTGGTTTTTTACGCGTTCAGTTT
AAGCATTTTTGTTCAACACGGTTGGCGACATAACGAAATAGGGACAAAAT
AGAAAGCCTGACTAAAAACACCTAAAACGCGCCAGATTTATTCTATTCAT
ATGTATTGACTGTACTATTTCATCATCACTTTTCAACTTTCAACACTGCC
ATATCGAACCTTTGTGGCCCATATAATATCAACATACTCATATTTTTCAT
GACCAGTTATAACATATATCAGCACACTCTACACATATACTAGTCCTGTA
CCACCAAATGATTTAAAACCCTATCTAGAGTGTTCTCATTCGCCCAATCA
TAACTTCCAAATGGTATGGTGCATGATCAAATTTGCAGGGGGTGATAAGC
ACGTAAATATTAATCACTCTCCATGATAAGCCTTGATTATTTGGCGAAGA
TGATGTATTCGTGGAACTCTAGTTTAGTTTAGTTTATTTATTCGCACATA
TATACACATAAAAACAATAATGAAATAATCGAAAATATTTAAAAGAAACG
TGCCAGAGGAGAAAAGAAGCCCACAGGGCTTATAAGAAATTCTCCTCCAT
TAACTTAACAAATATTAATTACTATACAATTGTGATATAATAAGTAACGA
ACAAAGGTATAACATTTTGGCTGGTAGGTCACATGAAGCGTTCAACGAAT
TTCACAGACTCTTTATTTGTATAATTCAGAAAACGCAGAACAGAACCTTC
CCAGCGTGGGCGACACCAGAGGTTTATGACAAGCTGACAGAGTTGACGTC
CTTCAACCCACGAACTCATTCTTCCGACAATCACAAGGCAAGAATCAGGC
TTCGCAGTGGTACGCACAATCAACACTAGTCTCACGAATTCCAGATAAGC
AATGCATGTTGAATCAACAATATATATTTGCTTTTTTGTTTTGTTGTTTG
TTTTTCATGTTTAATCAATTCATTACTTACGGACATACGAATATCAAGAG
ACTACTATAATCTCCATTAAAATGGAGATATAGCCTTGAGTGTGTCTGTC
CGTGTCTGTTTGTGTTTCAGGATTATTGTAGTCAACATAACTCAAGAACC
TCTGGATGGATTACGATGATATTTGATATGTGGGTAGGTGTTGGGAAGAC
AAAGGTCAAGGTCGATTTTGGACCCCTTGTATGTGACCTTGTTACAATTA
AAACTACTGACAATTGCCAGTAAACATTTTTAACTCCACAGTGTAACTTG
AATACATAATATATAAGATAACCGATTTTTACATGTATGAAAAACCGAAC
CCGTTTTGTACGCCAGGCCCTCTGCTTGGAGCCATGGTGANTAGCCTCCT
TTACAGCACGACTCGACCGTGGCAGGTCTGCTGCTGGCGCTGGGCGCCTT
TAACCACATGCATCCTCCTTACTGCGCATGCGTCATGGTGGAATTGTACC
AGGAGGATTCTGGGTAACTAATGTCTTCTCCATCAGTCCCTTGCAGTGGT
AAACATTTTTAACGAGCGAGTTCTGGGTATAGTCGCTTGTTATCGTGCTT
GGGGGTGGGGGGTGGTGTTTGTGTGTCTGGGGCTATTGTAGCAGTCATTT
TTTGTCAGGAGTATTAATCATAGTTTCACGCTGTTATCCAACTTGCCGAA
AGCAATTTTTCCCTTTATTTAAATGGTCTCGATGGCATGTAGAAAAAACT
GCCCAAAAAGGCAAATGATTTCTTCAAGGGTTATTATATAATTGTATGTA
TATATCATTTGCATCATGTAATCTACTCCAATTTTCAATGTACAAAAAAT
ACAGCTCAAGGTGGAGAAAGAATGATTTCACAAATAATGTCTTTTCCAGA
AACTTTTTCGTGGAGGTGTGGTACAGAAACGACAGCACCCACGACCCGTA
CCTGCTAACAGTCCCAGGCTGCCCGAATCCCTGCTCCTATCAACAGTTCC
TGAAGGCTACAAAAGACTCCATTGTCATGGACAGGGAAAAGGAATGTCAA
CTGAGCATCTTCAATAGGTTAAAGAGATGTAAGCTACGTACATTATTAAT
TCTTCAGGTCTGTAAAATGGTCCAGGTACTACTATTATAATTTCCAACGG
CGTTGTGCAACAATACCTTACACATCATGTATGAATGTTGATTCGCCAGT
TGCAAGTGAAGAGCAAGCTGTAATATTGTTGTTGCTGGGTTTTTATTGGT
TGATGATACTAGTCGGTAAGAATGGTATACTTGTGAGTCAACACAGCTAA
CCTACCATATTCCATCGGCTCCAATACTTGCACATCAGTTGCCATAATAC
GAGATACAATTGTGATAAAGCTATCTTGTTTATAGGGACATCACCCACGA
TAGGAGGAGTGGCACTGATGCTTCTATTGATCGCAATTGTTCTGATCTGG
ACCTACGTTCGGCGAACAAGGCGGAGACGTCAGCACAGCCAAAAACTGAT
CTCGGAAGAGAACATCTCACTGACGAACGACGATGAAGATGATGATGTCG
ATGATGAAACGTTATGAAATGTTAAATTATAGAATGTTCTACCCTCAATA
GATAAGGCTAGTTAGAAGAGTTGTGTTTGGATAGCAGGTCTATCGTGAGA
AGGGCATTGTCAGATGATCTAATTTGCTTTAGTTCTATTTTATGAGACAA
TATTTTAATGATGGAGATGTTTAAAATCTATTGATCGCCTGTTATTGATT
TCTTTGCTTCTACTAAGTTCTAGTCCATCTCTGGTACACTTCATTGGTAC
ACTCACTTTTCAACGTCAAATCTACCTGTGAATTCACTTTTAAATGGTCT
CATTTCATTGGTCTGCTTCAACGTGACGTAAAGAAGGCTGCGATCGTTAA
TATCCACCTCACATTCTCATCCATGACTGGTACATTCCAGCATTCTATGT
CAATTTGTAAATCTACCAATTTACCTTTAAGCAAACTGATTCCGGAGTGT
TATTCATGCTATCTGAGGAAGGCAAGACGGTTATGAATAAAGTGTTTGTC
A Coding sequence (CDS) from alignment at Sc0000205:285718..291118+ >transcript:BL70699_cuf6 ID=transcript:BL70699_cuf6|Name=transcript:BL70699_cuf6|organism=Branchiostoma lanceolatum|type=CDS|length=1524bp|location=Sequence derived from alignment at Sc0000205:285718..291118+ (Branchiostoma lanceolatum)
ATGCACCAGTGTATCTGGAAATTGATAGATTCTTTGTTTTGCGAGAAAAC
GCAGAACAGAACCTTCCCAGCGTGGGCGACACCAGAGGTTTATGACAAGC
TGACAGAGTTGACGTCCTTCAACCCACGAACTCATTCTTCCGACAATCAC
AAGGCAAGAATCAGGCTTCGCAGTGGCCCTCTGCTTGGAGCCATGGTGAN
TAGCCTCCTTTACAGCACGACTCGACCGTGGCAGGTCTGCTGCTGGCGCT
GGGCGCCTTTAACCACATGCATCCTCCTTACTGCGCATGCGTCATGGTGG
AATTGTACCAGGAGGATTCTGGAAACTTTTTCGTGGAGGTGTGGTACAGA
AACGACAGCACCCACGACCCGTACCTGCTAAATGCACCAGTGTATCTGGA
AATTGATAGATTCTTTGTTTTGCGAGAAAACGCAGAACAGAACCTTCCCA
GCGTGGGCGACACCAGAGGTTTATGACAAGCTGACAGAGTTGACGTCCTT
CAACCCACGAACTCATTCTTCCGACAATCACAAGGCAAGAATCAGGCTTC
GCAGTGGCCCTCTGCTTGGAGCCATGGTGANTAGCCTCCTTTACAGCACG
ACTCGACCGTGGCAGGTCTGCTGCTGGCGCTGGGCGCCTTTAACCACATG
CATCCTCCTTACTGCGCATGCGTCATGGTGGAATTGTACCAGGAGGATTC
TGGAAACTTTTTCGTGGAGGTGTGGTACAGAAACGACAGCACCCACGACC
CGTACCTGCTAAATGCACCAGTGTATCTGGAAATTGATAGATTCTTTGTT
TTGCGAGAAAACGCAGAACAGAACCTTCCCAGCGTGGGCGACACCAGAGG
TTTATGACAAGCTGACAGAGTTGACGTCCTTCAACCCACGAACTCATTCT
TCCGACAATCACAAGGCAAGAATCAGGCTTCGCAGTGGCCCTCTGCTTGG
AGCCATGGTGANTAGCCTCCTTTACAGCACGACTCGACCGTGGCAGGTCT
GCTGCTGGCGCTGGGCGCCTTTAACCACATGCATCCTCCTTACTGCGCAT
GCGTCATGGTGGAATTGTACCAGGAGGATTCTGGAAACTTTTTCGTGGAG
GTGTGGTACAGAAACGACAGCACCCACGACCCGTACCTGCTAAATGCACC
AGTGTATCTGGAAATTGATAGATTCTTTGTTTTGCGAGAAAACGCAGAAC
AGAACCTTCCCAGCGTGGGCGACACCAGAGGTTTATGACAAGCTGACAGA
GTTGACGTCCTTCAACCCACGAACTCATTCTTCCGACAATCACAAGGCAA
GAATCAGGCTTCGCAGTGGCCCTCTGCTTGGAGCCATGGTGANTAGCCTC
CTTTACAGCACGACTCGACCGTGGCAGGTCTGCTGCTGGCGCTGGGCGCC
TTTAACCACATGCATCCTCCTTACTGCGCATGCGTCATGGTGGAATTGTA
CCAGGAGGATTCTGGAAACTTTTTCGTGGAGGTGTGGTACAGAAACGACA
GCACCCACGACCCGTACCTGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000205 | genome | Sc0000205:285718..291118 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL70699_cuf6 |
| Biotype | protein_coding |
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