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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82336_cuf0 >transcript:BL82336_cuf0-protein ID=transcript:BL82336_cuf0-protein|Name=transcript:BL82336_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
MIISTLIQCFIVSFQRQTMTSLPVWILKPLITRFVIQSWRIVFTVYGVNV
LRRAVSDKKYIKCIPCGLPVTFIATLVLEFVLYISGVYFGTDMWFLKATV
SKVVEVLLSLTSLTVSQMMIDKVHAKISVGESLFVHLVVQNCLSFTVSWV
AMETMVQLAVTLEKLWVVHSDGLWTMMLFGTISQTLIWTYIENIRFRESF
RVVVTTHAPVVMFIAWTLPSIPEGFFLHMARVILFLTSVLLVLRLAKAIT
QIKDLTKVTLPHPKGSVKSQKELAHLAMNNKST Run BLAST on NCBI mRNA from alignment at Sc0000180:49161..50635- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82336_cuf0 ID=transcript:BL82336_cuf0|Name=transcript:BL82336_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=1475bp|location=Sequence derived from alignment at Sc0000180:49161..50635- (Branchiostoma lanceolatum)
GAGCAATCCATTATACTGACACTGAATACCCCATACAGTATACACAAACC
TGGGTTTACAAACCTCCGGTTGTATGATCATCTCAACGTTAATTCAATGT
TTCATTGTTTCATTTCAAAGACAGACCATGACGTCACTTCCTGTCTGGAT
ACTGAAACCGCTGATCACCCGTTTCGTCATCCAAAGCTGGAGAATCGTTT
TCACGGTGTACGGAGTTAATGTCCTCAGACGTGCTGTTTCAGACAAAAAA
TACATTAAGTGCATACCGTGTGGCCTTCCCGTTACCTTCATAGCGACGCT
GGTCCTAGAGTTTGTGCTGTATATCAGCGGGGTGTACTTCGGAACGGACA
TGTGGTTTCTCAAAGCCACCGTGTCAAAAGTTGTTGAAGTATTATTATCG
TTGACAAGTTTGACTGTTTCTCAAATGATGATTGACAAGGTCCACGCCAA
GATATCGGTTGGGGAGAGTTTGTTTGTACACCTTGTTGTTCAAAACTGTC
TGTCGTTCACTGTCAGCTGGGTTGCCATGGAAACGATGGTACAACTCGCT
GTGACGCTGGAGAAACTTTGGGTTGTACATTCTGATGGACTTTGGACCAT
GATGCTTTTTGGCACCATCAGTCAAACATTAATATGGACTTACATCGAAA
ACATAAGGTAAGGAGTCACTTTTGTTCTGGTAAAGACAATATTGATATCG
TGTTTTTGACAAACGTGGGGACAAGGAAAATCGTTAAAGAATCGATGATT
GCTTAACAACAATTTGAGTTCTGCTGTTCCTAATGCATATTTATTTATTT
ATTTATCAATGATAACCACAGAATCCTAAAACACATAGCTAAATGTTTTG
ACATTGACGACAATAAAAAGTCAAATATTTGTTCGCTTGTGTCTGGTGAT
AATTTCTTGTCTTAAAAAGCCTATAAACTTCACTTTTTTGTTAGGTTTCG
AGAGTCGTTTCGAGTCGTCGTCACAACACACGCCCCTGTCGTCATGTTCA
TCGCCTGGACATTGCCGAGTATTCCTGAAGGCTTTTTTCTGCACATGGCA
CGCGTTATACTCTTTCTGACGAGTGTTCTCTTGGTCCTGCGTCTCGCCAA
GGCCATCACACAAATCAAGGACCTCACAAAAGTGACCCTCCCACACCCGA
AAGGATCGGTGAAGTCTCAGAAAGAGTTGGCACACCTAGCGATGAACAAC
AAAAGTACATGACTCATTTTTGCACGTCAACTTCGTTCATTCCCAGTATA
TAGTATAGTACCTGTTCCTTATAGCCGTTTGTACAGTGGTTTCATCGATA
TAACATCTAAAAACATCATGGAAACAAATCGAGCTGTTAAAAGAGTGATA
TACCATATATGCAGAACAAAATAGTCAATCAATGATACTAATTCATGACG
TATGACGAGTCATTTGAAGTATAATGGGACTGAGATAATCTTAATTCATA
CAGCCGTAAGTAGTTGACTGTAGTG Coding sequence (CDS) from alignment at Sc0000180:49161..50635- >transcript:BL82336_cuf0 ID=transcript:BL82336_cuf0|Name=transcript:BL82336_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1704bp|location=Sequence derived from alignment at Sc0000180:49161..50635- (Branchiostoma lanceolatum)
ATGATCATCTCAACGTTAATTCAATGTTTCATTGTTTCATTTCAAAGACA
GACCATGACGTCACTTCCTGTCTGGATACTGAAACCGCTGATCACCCGTT
TCGTCATCCAAAGCTGGAGAATCGTTTTCACGGTGTACGGAGTTAATGTC
CTCAGACGTGCTGTTTCAGACAAAAAATACATTAAGTGCATACCGTGTGG
CCTTCCCGTTACCTTCATAGCGACGCTGGTCCTAGAGTTTGTGCTGTATA
TCAGCGGGGTGTACTTCGGAACGGACATGTGGTTTCTCAAAGCCACCGTG
TCAAAAGTTGTTGAAGTATTATTATCGTTGACAAGTTTGACTGTTTCTCA
AATGATGATTGACAAGGTCCACGCCAAGATATCGGTTGGGGAGAGTTTGT
TTGTACACCTTGTTGTTCAAAACTGTCTGTCGTTCACTGTCAGCTGGGTT
GCCATGGAAACGATGGTACAACTCGCTGTGACGCTGGAGAAACTTTGGGT
TGTACATTCTGATGGACTTTGGACCATGATGCTTTTTGGCACCATCAGTC
AAACATTAATATGGACTTACATCGAAAACATAAGGTTTCGAGAGTCGTTT
CGAGTCGTCGTCACAACACACGCCCCTGTCGTCATGTTCATCGCCTGGAC
ATTGCCGAGTATTCCTGAAGGCTTTTTTCTGCACATGGCACGCGTTATAC
TCTTTCTGACGAGTGTTCTCTTGGTCCTGCGTCTCGCCAAGGCCATCACA
CAAATCAAGGACCTCACAAAAGTGACCCTCCCACACCCGAAAGGATCGGT
GAAGTCTCAGAAAGAGTTGGCACACCTAGCGATGAACAACAAAAGTACAT
GAATGATCATCTCAACGTTAATTCAATGTTTCATTGTTTCATTTCAAAGA
CAGACCATGACGTCACTTCCTGTCTGGATACTGAAACCGCTGATCACCCG
TTTCGTCATCCAAAGCTGGAGAATCGTTTTCACGGTGTACGGAGTTAATG
TCCTCAGACGTGCTGTTTCAGACAAAAAATACATTAAGTGCATACCGTGT
GGCCTTCCCGTTACCTTCATAGCGACGCTGGTCCTAGAGTTTGTGCTGTA
TATCAGCGGGGTGTACTTCGGAACGGACATGTGGTTTCTCAAAGCCACCG
TGTCAAAAGTTGTTGAAGTATTATTATCGTTGACAAGTTTGACTGTTTCT
CAAATGATGATTGACAAGGTCCACGCCAAGATATCGGTTGGGGAGAGTTT
GTTTGTACACCTTGTTGTTCAAAACTGTCTGTCGTTCACTGTCAGCTGGG
TTGCCATGGAAACGATGGTACAACTCGCTGTGACGCTGGAGAAACTTTGG
GTTGTACATTCTGATGGACTTTGGACCATGATGCTTTTTGGCACCATCAG
TCAAACATTAATATGGACTTACATCGAAAACATAAGGTTTCGAGAGTCGT
TTCGAGTCGTCGTCACAACACACGCCCCTGTCGTCATGTTCATCGCCTGG
ACATTGCCGAGTATTCCTGAAGGCTTTTTTCTGCACATGGCACGCGTTAT
ACTCTTTCTGACGAGTGTTCTCTTGGTCCTGCGTCTCGCCAAGGCCATCA
CACAAATCAAGGACCTCACAAAAGTGACCCTCCCACACCCGAAAGGATCG
GTGAAGTCTCAGAAAGAGTTGGCACACCTAGCGATGAACAACAAAAGTAC
ATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000180 | genome | Sc0000180:49161..50635 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82336_cuf0 |
| Biotype | protein_coding |
|
