TCONS_00041002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041002
Unique NameTCONS_00041002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041002 ID=TCONS_00041002|Name=TCONS_00041002|organism=Clytia hemisphaerica|type=transcript|length=770bp
ATCAATTATCATCCATGATGACCACATTGGCGGGAGATGCTTGATCAGTT
GGAATTCATCATTCACAATTTTCTCACAGACGGAAGTATGAAGATTTGAG
TGATGAAGAAACAGGAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAA
GACgtccaaagttttaaaattgatcGCAAGCAAAGAAAACAgcatgaaat
ttcaaaaaatggaagcATGGTCactaaagaaaaaCCTCCACAAACCAGTA
TTCACATCAATATCAACGTAACGAGAGGGAGCTTACTTTCCATCGGACCA
TTACAGCGTAGTCATATAGGATGCTTAATTATTGACTGGATGGCATAGCC
CTTGGTAatgaaaatcatcatcatcatcatcatccttcgatctAGGTCCG
ATGGAAAATACCCAGgaCAAATTATCTCATTGTCTTCGATGAGGTTTACT
GTATCAAAGCGATGATATCCCAATTAAAACAAACGTATGGTTTGACTGTA
AAAACCGTCAAAAACAGCTTGAAAGAATTATGatgaGAAAATTGTTGTTT
GTCCAGTTTCGCGCCCAAAAAATCCATGAAATGTTTGCTGCAGAATCAGA
AGAAGTTGAAGAAAGTGCTGTCTGAGGAGGTTCACCTTGCAGAAGATAAT
GTTCTCATTCATCCAATATTTCTTCAAACTGTCCAATCACGGAGCTCTGC
TCTTCCTATCATCCATCAGTCACGAAACGTCATCAGTCATCAAATGAGAA
AGTCCTCAGTAAGCTGGTAC
Run BLAST on NCBI

transcript from alignment at sc0002659:12031..15667+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041002 ID=TCONS_00041002|Name=TCONS_00041002|organism=Clytia hemisphaerica|type=transcript|length=3637bp|location=Sequence derived from alignment at sc0002659:12031..15667+ (Clytia hemisphaerica)
ATCAATTATCATCCATGATGACCACATTGGCGGTgatcctttttttattt
tgatcctTTACAGTTTGAACTCACTGCATACTTTGCAATCTTTCCAATTA
TGCAGGGAAATATTTGGATTGCATGCTGTCAAGAGCTTAAGTATTCTACC
TCTCTTTTACCACCGTCCACATGTTTTTACTTGACATGCAAAAAAGCTCT
CCTTAACTGAGACCTTAATCCTATAAAAGCAGCTGGTACAATCGAAAGAC
CATGATCTGAGCCTAGATTACTTAGTAAAAGACTGAATTTACTGTTTTAT
GCTCCAAAGCAACTCTTTGGGTTTTCAAAATGCCCCAAGACAGGGGGGGT
GCTATTTGTAGCTTTAATAAGTAAGTGCACTTTTCCTGCATGGCATAACT
TatattttttgcacttttttggacacaaataagtttctttttccAGGGAG
ATGCTTGATCAGTTGGAATTCATCATTCACAATTTTCTCACAGACGGAAG
TATGAAGATTTGAGTGATGAAGAAACAGGTACAGGTCTTTGTATAATGTG
TTTTGTTATAATATTGAGGTACCACTAAATTTTGACTCAGCCCAAGCTCT
TCTCTTAATAGATTTAAAATTTACTTACAGTACAATGATTTCTATTACAT
CTAGCCTCGATATCCAGACTTTTTTGGACAGTCTAGTTGAAGTATTTTTA
TCTATGGTTTACGGTCTGATTTACCTAGATCCTCTGCATTCAAATCTGTG
GATGTAAGTGATTGTTCGATGGCTGCAAGATATAACCTTAGGATGTTGAG
GTTCTTCGACAAACAGTTTTCAATAAGATGATAGATATTAATCACTCTAA
GACTGAAAATGGCTTTAGAGAATTAATTGAAACTAGCATCATCTTAAGTA
ATCATCCAAACCTGGTGGAACGACCGTAAAAGTGGAGGGGCTGAAGGCTA
ATATTAGTCAAATTTTGCTtggaaattgagaaaaaagtagaTTTCGATAT
TAAAGCATCCCCGCTTTCCCCCAAGCCTGTCCTCTGGAGCCAAATTTCAA
CCTATAATAGAGGTCACGTCCTGTTCAAGTTGCACATCTTATAACACAgc
attaaagggacataacagtacttgcgaaaattgtaaacaaactgtatgca
gcggatacaaaatcaaaacaaatgtcacatgtcagaatataaaaatcaaa
ccaaatatggctaattttgattgttcaattgtttatTACAAGTTtctttt
ggacacgtgattttaattgttctctttaatgacacgtggttcgcgcaatg
tttacatctTACTactttatgtccctttaaactaTAACCATTCAATGATA
TGATAAACAATAATGAGTAACATGTATctcgttttaaatttttcgtctTA
TAGGAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAAGACgtccaaag
ttttaaaattgatcGCAAGCAAAGAAAACAgcatgaaatttcaaaaaatg
gaagcATGGTCactaaagaaaaagtaaagccaGGACTTCACATCTCATCA
AGGTCTCAGATAGTTTCATATAAACTAAATGAAAATCATGATGTCCAAAA
TCTGATTGataaaatgattttattgaagTTTATCAGCTGTTTTGTTCTCT
ATTTTAATCAGTTTGAATAAATAAACAACATACCTCCCACCACACAATTT
TCATCTTCCCACCAAGTTTCCATTATTATTACTAAGcaaatttttaaatt
cattcAAGTGTTTCAAGGTATATAAGTATTCATTGATATTAACTTTAGAT
TCCAGCCTCCACAAACCAGTATTCACATCAATATCAACGTAACGAGAGGG
AGCTTACTTTCCATCGGACCATTACAGCGTAGTCATATAGGATGCTTAAT
TATTGACTGGATGGCATAGCCCTTGGTAatgaaaatcatcatcatcatca
tcatccttcgatctAGGTCCGATGGAAAATACCCAGGTACGACAATTGAA
ATCACGGGCAaatgtttttatctttgtgTATCCTTACTATGTTTCTTTTA
AAGgttaaaagcttttttctatttttcagaagaTTACTAAACAAAGGTTT
TCGTATCAGTGTACAGAATTATTGAACCATCAGTGGTAGTTTGTATTGAC
CCTAAAGAATATTTTGTTTCTGGTCCAGCTTGAAAATTGTCGTAACCTGG
Ccgaattttttctctttgaactttccaaatgttttcaaaatttcccattt
taacattttctacACACACACACAAGTGATCTAAAACAATCTTTCCACAT
TTTTCATTTCGTACTCCTTCAATCCCAATTTCATGggcttttcttttcaa
attttaattgaaatctcatttttttaattatcgatataaaaaatttgata
tatGATATCATGACAACACATGAAATTATGAGAATCTTTTTTGTGAGTAT
AAAAggttttccattgtattttccgATTAACTAAGGATAAGCTGATGTAG
GAGTATTTGATTTTGTTAAtacttttcatttcatttttaggaCAAATTAT
CTCATTGTCTTCGATGAGGTTTACTGTATCAAAGCGATGATATCCCAATT
AAAACAAACGTATGGTTTGACTGTAAAAACCGTCAAAAACAGCTTGAAAG
AATTATGGTACAAGTCTCCCTTATATTTCATAATAACAGAAACAATTTCT
AACTGTATGTTTGATCTCTAATAATTTCATCAATATCATCATATTCATCT
TTATTGAACTACATGGGGTCTCCCAAGTTTACACACAACGTCATTTTCTT
GGTTGTTAaactttttggaagaaaattCATATGCTGGGGAGTGACGTTTT
TCtagaagattttattttcacttattGAGAATTGTCCATGGGaatgaaat
taatttattttgattttatttttttagatgaGAAAATTGTTGTTTGTCCA
GTTTCGCGCCCAAAAAATCCATGAAATGTTTGCTGCAGAATCAGAAGAAG
TTGAAGAAAGTGCTGTCTGAGGGTAAGGAATTAATTTTACGAAATTGCTT
GCGCTGTAAGAAATTAAATTGATTACAATATTTTGGTCACACTTTTCTCA
TGAAATCGATCAGAATCAATCTGGATGAATTCTGCATAAAAGGGAACTAT
GTTAAGATTCATCGCATGTTTGAATGACCTTAAAGGTCTGAAACATTTAA
ATTGACTCGAAATCTTTTGTCTTTGGACTATTGGATGCAATCCTCTGTTA
AAGTTGATAGGTGTATGAGAAATTTCACGATCGCAATGAATCTCGCTCAA
AATTGATTTAAGGTTTGAAAGTCTTCTCAATGACAAAAGTGAATTTACTA
TTACAGAGCAACTAGTCTCGATTCCCCCTGATTTATTGATTcattcaatt
ctgttttgattattatttttgctTATTACCTATAGAGGTTCACCTTGCAG
AAGATAATNTTGTTTTGATTACTATTTTTGCTTATTACCTATAGAGGTTC
ACCTTGCAGAAGATAATGTTCTCATTCATCCAATATTTCTTCAAACTGTC
CAATCACGGAGCTCTGCTCTTCCTATCATCCATCAGTCACGAAACGTCAT
CAGTCATCAAATGAGAAAGTCCTCAGTAAGCTGGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025034XLOC_025034Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041002-exon-sc0002659-1491911889:12031..12062TCONS_00041002-exon-sc0002659-1491911889:12031..12062Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:12031..12062TCONS_00041002-exon-sc0002659-1510915933:12031..12062Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:12031..12062TCONS_00041002-exon-sc0002659-1575043694:12031..12062Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:12477..12558TCONS_00041002-exon-sc0002659-1491911889:12477..12558Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:12477..12558TCONS_00041002-exon-sc0002659-1510915933:12477..12558Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:12477..12558TCONS_00041002-exon-sc0002659-1575043694:12477..12558Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:13434..13553TCONS_00041002-exon-sc0002659-1491911889:13434..13553Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:13434..13553TCONS_00041002-exon-sc0002659-1510915933:13434..13553Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:13434..13553TCONS_00041002-exon-sc0002659-1575043694:13434..13553Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:13836..14016TCONS_00041002-exon-sc0002659-1491911889:13836..14016Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:13836..14016TCONS_00041002-exon-sc0002659-1510915933:13836..14016Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:13836..14016TCONS_00041002-exon-sc0002659-1575043694:13836..14016Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:14571..14687TCONS_00041002-exon-sc0002659-1491911889:14571..14687Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:14571..14687TCONS_00041002-exon-sc0002659-1510915933:14571..14687Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:14571..14687TCONS_00041002-exon-sc0002659-1575043694:14571..14687Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:14958..15052TCONS_00041002-exon-sc0002659-1491911889:14958..15052Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:14958..15052TCONS_00041002-exon-sc0002659-1510915933:14958..15052Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:14958..15052TCONS_00041002-exon-sc0002659-1575043694:14958..15052Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1491911889:15525..15667TCONS_00041002-exon-sc0002659-1491911889:15525..15667Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1510915933:15525..15667TCONS_00041002-exon-sc0002659-1510915933:15525..15667Clytia hemisphaericaexon
TCONS_00041002-exon-sc0002659-1575043694:15525..15667TCONS_00041002-exon-sc0002659-1575043694:15525..15667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002659supercontigsc0002659:12031..15667 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.00237412	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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