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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL78906_cuf0 >transcript:BL78906_cuf0-protein ID=transcript:BL78906_cuf0-protein|Name=transcript:BL78906_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=299bp
SPTAVHQSFCDGSPTGALWARDASNVEDQPTGTKTSLESQPETHIDEKPF
MCGECGYRTVSKSKLSIHMRIHTGEKPYMCGECGHRTTQKSALSKHMRTH
TGEKPYKCDQCDYSAAQKSTLDSHLAKHSGEKPFMCGECGYRTTRKSKLS
RHMRTHIGEKPYKCDQCDYPAGLKCNLDSHLAKHIGKEHYMCGECGYKTT
NNSDLSEHMRIHTGEKPFKCDQCDYAAAHKSTLDRHLVKHTGEKPYMCGE
CGYRTGHKSALSRHMRTHTGEKPFMCGECGYRTAHKCHLSSHMRTHIAE Run BLAST on NCBI mRNA from alignment at Sc0000114:321204..323949+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL78906_cuf0 ID=transcript:BL78906_cuf0|Name=transcript:BL78906_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2746bp|location=Sequence derived from alignment at Sc0000114:321204..323949+ (Branchiostoma lanceolatum)
GTCTCCTACTGCTGTTCACCAGAGCTTCTGTGATGGGTCTCCTACTGGAG
CTTTATGGGCCAGAGATGCGAGCAATGTTGAAGACCAGCCAACAGGAACC
AAAACCAGTTTGGAAAGTCAGCCAGAAACACATATTGATGAGAAACCCTT
CATGTGTGGAGAGTGTGGGTATAGAACTGTCAGCAAGTCCAAGTTGTCCA
TACATATGAGAATCCATACAGGTGAAAAACCCTACATGTGTGGCGAGTGC
GGACACAGGACAACTCAAAAGTCTGCCTTATCCAAACATATGAGAACCCA
TACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGATTATTCTGCAGCAC
AGAAATCCACCTTAGACAGTCATCTAGCAAAACACTCAGGTGAGAAACCC
TTCATGTGTGGGGAGTGCGGGTACAGGACTACCCGAAAGTCCAAATTGTC
CAGACATATGAGAACCCATATAGGTGAAAAACCCTACAAGTGTGACCAGT
GTGACTATCCTGCGGGACTGAAATGTAATTTGGACAGCCATTTAGCGAAA
CACATCGGCAAGGAACACTACATGTGTGGGGAGTGCGGGTACAAAACAAC
TAACAATTCTGACTTATCCGAACATATGAGAATCCACACAGGAGAAAAAC
CCTTCAAGTGTGACCAGTGTGATTATGCCGCTGCACATAAATCCACATTG
GACCGACATCTAGTCAAACACACTGGAGAAAAACCCTACATGTGTGGGGA
GTGCGGGTACAGAACAGGTCACAAATCTGCCTTATCCAGACATATGAGAA
CCCATACTGGTGAGAAACCCTTCATGTGTGGCGAGTGCGGATACAGAACA
GCTCACAAGTGTCACTTATCCAGCCATATGAGAACCCACATTGCTGAATA
ACGAACCTACAAGTGTAACCAGTGTGAGTATTCAGCAGCTCGAAAATCAG
ATTTTGTCGGGCATGTAGCTAAACACACTGATGAGAAATGTGTACGAATC
GCAGGTACAGGACAACAGAAGTTATTCAGCCATCGATACATCTGTATGGA
ACATAGGAAAATTGATATAAGAACACTACATGTGTTCTATCCCAATCTCT
GTGTGAGAATATGTCATTTCACAGTTCCGAATGCGCATGTGCTTTCGCGG
TGCATTGTCGTCCAAGGTCAATGTGTAAGATTCCTCATTTGTAAACAACG
TCGAGACGTGGTTGCATCATTCCCGATCCCGCTTGGAGTGGCTTTAACCT
ATGACATTACCGACAAGCCCATGCGGTGCTGGAACTATGAGAATACTTAT
TCATACAGAAGTGAATCTGTACAAATATGATAACACTGTGCAGTATCTGT
ACATCCACGGTACTTTAGTCTCTATCGTGTACTTTATGTCATGTTATTCG
TAAAGAAAACGTACAGCAGAGTGGAACATGCTTTGTTTGAATTGCTTTAC
ATGTAAGTATAAAGAATAAGGTTTTGACACTTGATTACAAACTTATTTCC
GTTAAATCTAATGTAGGCTATCCTGACAGCTGACTTTGTGCTGACATTTT
ACTAAACGTTGTGCTTTATTGTAAGAAGCGTGCATGAAGTTTAAGGCTAA
ATCACTAACATATACCTATATATTAGTACACGAATGGCTATGCTATAATG
GAGTGTTTAACATAATCCTCTGTAATATGAAGCGACTTTCATGTTTTATA
TGTAAGAATATTGATTGAGAATATTTTAAGAAGCATGATTACTGTGCATT
TTTCAAGGCTGTGATGTTTATTTTTCTTACTTACTTATTTACTAGCATAT
ACACTATATATTGGAATAATTATGACTGATATACCTGAAATGTATCATAG
TGAACTAAGGTTGTGTTTTGTGAAACGTCTATCATGGTCGATATGATATT
TACTAGCATATACACTATATATTGGAATAATTATGAATGATATATCTGGA
ATGTATTATAGTCAGCTAAGATTATGTTTTATGAAGCAGCTGTCATGGTC
GAAATGTAAGAAGACAGCTGATTCAAAATATGCTAATAAGTTTGATAGAA
TATACTAGTAAGTTTGATAAAAGAACAGGTTGCATTCCATTTGTATCTAG
TGTGCAAGTTAAAACGTTCCAACTCTCTCTAGAAGACCTGAAAGAAATGT
CACAGGGTTACCTGACTTACCAGAAGGGTTAAAGTTGAAATGCCAAGTCC
CTCAACGACGCTAAATGTTAGATTTTACTTCAATGTCCAATTACTGATAT
AATTTCAAAAAGCTGTGCATTAAGTTCAAGGCTGTGACATATTTTTTTCT
TAGTTACTTATTTACTAGTATATACACTATATATTAGAATAATTATGACT
GATATACCTGGAATGTATCATAGTGAACTAAGCTTGTGTTATATGAAGCG
TCTATCATGGTCGATATGTAAAAACACAGCTGATTCAACATATGCTAATA
AGTTTAATAAAATATGCTACTAATGTTAATGATAATATGCTAGTAAGTTT
AATAGAATATGCTACTAATGTTAATAAAAATATGCTAGTAAGTTTAATAA
AAGAACAGGTTTCATTTCATGTTGATTTAGTGTGGTAGGATCTTCGATCT
GCCATGGGCGACAGAAAGTTGTGGAAACATGTGTGTCACCTCTAACTCAA
GAGGATGAACTGAACTGAACTGAAACTGGTAGATGCTACCATGCTGGCCG
TACAAGTGAAAACGTTCCAACTCTCTCTAACAGACCTGAAAGAAAT Coding sequence (CDS) from alignment at Sc0000114:321204..323949+ >transcript:BL78906_cuf0 ID=transcript:BL78906_cuf0|Name=transcript:BL78906_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=900bp|location=Sequence derived from alignment at Sc0000114:321204..323949+ (Branchiostoma lanceolatum)
TCTCCTACTGCTGTTCACCAGAGCTTCTGTGATGGGTCTCCTACTGGAGC
TTTATGGGCCAGAGATGCGAGCAATGTTGAAGACCAGCCAACAGGAACCA
AAACCAGTTTGGAAAGTCAGCCAGAAACACATATTGATGAGAAACCCTTC
ATGTGTGGAGAGTGTGGGTATAGAACTGTCAGCAAGTCCAAGTTGTCCAT
ACATATGAGAATCCATACAGGTGAAAAACCCTACATGTGTGGCGAGTGCG
GACACAGGACAACTCAAAAGTCTGCCTTATCCAAACATATGAGAACCCAT
ACTGGTGAAAAACCCTACAAGTGTGACCAGTGTGATTATTCTGCAGCACA
GAAATCCACCTTAGACAGTCATCTAGCAAAACACTCAGGTGAGAAACCCT
TCATGTGTGGGGAGTGCGGGTACAGGACTACCCGAAAGTCCAAATTGTCC
AGACATATGAGAACCCATATAGGTGAAAAACCCTACAAGTGTGACCAGTG
TGACTATCCTGCGGGACTGAAATGTAATTTGGACAGCCATTTAGCGAAAC
ACATCGGCAAGGAACACTACATGTGTGGGGAGTGCGGGTACAAAACAACT
AACAATTCTGACTTATCCGAACATATGAGAATCCACACAGGAGAAAAACC
CTTCAAGTGTGACCAGTGTGATTATGCCGCTGCACATAAATCCACATTGG
ACCGACATCTAGTCAAACACACTGGAGAAAAACCCTACATGTGTGGGGAG
TGCGGGTACAGAACAGGTCACAAATCTGCCTTATCCAGACATATGAGAAC
CCATACTGGTGAGAAACCCTTCATGTGTGGCGAGTGCGGATACAGAACAG
CTCACAAGTGTCACTTATCCAGCCATATGAGAACCCACATTGCTGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000114 | genome | Sc0000114:321204..323949 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL78906_cuf0 |
| Biotype | protein_coding |
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