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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL75856_cuf1 >transcript:BL75856_cuf1-protein ID=transcript:BL75856_cuf1-protein|Name=transcript:BL75856_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=223bp
PEAGDDAVPQNFCDGSPTGVSSGRDASNVEYKLKGTKTRLDNRPEAQTDE
RPFMCGECGYRTISKSKLSRHMRSHTVEKPYKCDLCDYSAARKSTLDSHL
ARHTGEETYMCGKCDYRATKISDLSKHMRSHTGEKPYKCDQCDYSAAQKS
ALNSHLARHTGEKPFMCGECDYRCLRKAQLSRHMRTHTGEKPYMCWECGN
RTTEQCHLSEHMRTHTGEKNLQV Run BLAST on NCBI mRNA from alignment at Sc0000114:16980..19590- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL75856_cuf1 ID=transcript:BL75856_cuf1|Name=transcript:BL75856_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2611bp|location=Sequence derived from alignment at Sc0000114:16980..19590- (Branchiostoma lanceolatum)
TGCCAGAGGCAGGTGATGATGCTGTTCCCCAGAACTTCTGTGATGGGTCT
CCTACTGGGGTTTCATCGGGCAGAGATGCAAGCAATGTTGAATACAAGCT
GAAAGGAACCAAAACCAGGTTGGACAATCGGCCAGAAGCACAGACTGATG
AGAGACCCTTCATGTGTGGCGAATGTGGGTACAGGACTATCAGCAAGTCC
AAGTTGTCCAGGCATATGAGATCTCACACAGTTGAAAAACCCTACAAGTG
TGACCTGTGCGACTATTCTGCTGCACGGAAATCTACCTTGGACAGCCACC
TAGCTAGACACACCGGTGAGGAAACCTACATGTGTGGAAAGTGTGACTAC
CGGGCAACTAAAATTTCTGACTTATCGAAACATATGAGAAGTCATACAGG
TGAAAAGCCCTACAAGTGTGACCAGTGTGATTATTCTGCTGCACAGAAAT
CGGCTTTGAACAGCCATCTAGCTAGACACACCGGTGAGAAACCCTTCATG
TGTGGAGAGTGTGACTACAGGTGCCTTCGCAAGGCTCAGTTGTCCAGACA
TATGAGAACCCATACAGGTGAAAAACCCTACATGTGTTGGGAGTGTGGGA
ACAGAACAACTGAACAGTGCCACTTGTCTGAACATATGAGAACTCACACA
GGTGAAAAAAACCTACAAGTGTGACCCGTGCGACTATTCTGCTGCACTAA
AATCCACCTTGGACCGACATCTGGCAAAACACACAGGGGAAAAACCCTAC
ATGTGTGGGGAATGCGAGTACAATACAGCTAATAAGTCTCACCTATCGAG
ACATATCAAAACCCATACAGGTGAAAAACCCTACAAGTGTGACCAGTGTG
ATTATTCTGCTGCAGAGAAGTCCAAATTGGACCGACATATAGCCAAACAC
ACCGGTGAGAAACCCTACATGTGTGGGGAATGTGGGTACAGAACAGCTCA
CAAGTTTCACTTATCCCGACATATGAGAACCCATACTGGTGAAAAACCCT
ACAAGTGTGACCAGTGTGACTTTTCTACTGCAGGGAAATCCAAATTGGAC
CATCATCTAGCCGTACATGCTGGTGAGAAACCCTACATGTGTGGCGAGTG
CGGGCACAGGGCAGCTCAAAAGTGTGACTTATCCAGACATATGAGAACCC
ATACCGGCGAAAGGCCGTACAAATGTGACCAGTGTGACTACTCTGCTGCA
CAGAAATACACATTGAAGAAACATCTTGCCCGACACACTGGAGAAAAACC
CTACATGTGTAGTGAGTGAGGGTACGGGACAACTCAGAAGTCTAACTTAT
CTAGGCACATGAAAACCCATAATGGTGAAAAGCCACTAGTGTGACAAGTG
TGATTATTCTGCTGCAGAAAAAGCCTATTTGGACCGACATCTAGCAAAAC
ACTCATGTGGGAAACCCTACATGTGTGACGAGTGCGGGTACAGTGTAACT
CAAAAGTCTCACTGATTCAGACATACAGAACCCATAGTGGAGAGAAAAGA
AATGAATTTGTGACAAGTTAGAGTATTCAGCAGCTCAGTATTAACCCTTA
AGCTGCCAGTCCCGACTTAACTAGGGATACAGAAATATGCCTTGTGTGTT
GGACCCGGTTATAACCGGGATAGGGTATTCCCCAGAACAAAACAGCTTTG
CGTGCGTGTAGGGCGGGAAGTTAGGGGAGTTAGCGCCGCCAGGCGTTTCG
CGGGTTTCGTGAGGGAGGTCAGGGGTCGAACATTTTTGATTTTTACTTGG
CTAAAAAACCTGGCAGCTTAAGGGTTAAACACTGGAACTCTATATTGTTT
ACGGAGTGCAGGTACAGAACAACAGAAGTTATCCAGCCGGTTGCGCATTC
GCAGTCGTGATGCATTGTGGTCTACCGTCAAAGTTTAAGGTTCATAATTT
GTAACAATTATTTTTTAAAAGCTGTTTGCAACACTCCTGATTGGAATGAC
CTTAACCAATGACATTACCCACAATCTCCTGCGCTGCTGGAACTGTGAGA
AGACGAGAATCCATGGAAATATGATAGCACTGTAAAATATCTAGTCTCTA
TCAAGAACTTTATGTCTGTGGTTACTGAAACTGTTTGTTGGAAGTACTCT
AACTAAAGAATATTTCCGTTAAACCTGATATGGGCTATCCTGACGGATGC
CTTTGTATTGACGTCCTACTGAATGTTGCGCTTGAGTGTAACAAGTGTGT
ATAAAGTTAAAGGCTGTGATGTTTATTATCTCACTTATTCACAAGCCTAT
ACACTATATATTGGAACATTAATGATGACGCTGTACCAAGAGTGTTTATC
GTTATGAAGAATTGCGAAGTAAGCTTGTGTTATATGAAGCTACCGTCATG
GCTGATATGTACAGTTCATTCAAAATATGCTCATTTCTGACAAGAATTAA
CGTTTGATACAAGAACAGGTTCCGTTACATTTTTTTTCTTGTGACGTAGA
TGTGATTTATTGTGTTACTATCCGGTTGTTCTGTCCCGTACACGTCAGGC
GAAAGTCGTGTTGACATTCCTTGTACGGACTTCAACCCCGTTTGTCCGAT
AAACCCCCTTCTATGGCCAACCTGTCCTAAATATAGTGGTGAACATACAT
CAGTCATTTTT Coding sequence (CDS) from alignment at Sc0000114:16980..19590- >transcript:BL75856_cuf1 ID=transcript:BL75856_cuf1|Name=transcript:BL75856_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=672bp|location=Sequence derived from alignment at Sc0000114:16980..19590- (Branchiostoma lanceolatum)
CCAGAGGCAGGTGATGATGCTGTTCCCCAGAACTTCTGTGATGGGTCTCC
TACTGGGGTTTCATCGGGCAGAGATGCAAGCAATGTTGAATACAAGCTGA
AAGGAACCAAAACCAGGTTGGACAATCGGCCAGAAGCACAGACTGATGAG
AGACCCTTCATGTGTGGCGAATGTGGGTACAGGACTATCAGCAAGTCCAA
GTTGTCCAGGCATATGAGATCTCACACAGTTGAAAAACCCTACAAGTGTG
ACCTGTGCGACTATTCTGCTGCACGGAAATCTACCTTGGACAGCCACCTA
GCTAGACACACCGGTGAGGAAACCTACATGTGTGGAAAGTGTGACTACCG
GGCAACTAAAATTTCTGACTTATCGAAACATATGAGAAGTCATACAGGTG
AAAAGCCCTACAAGTGTGACCAGTGTGATTATTCTGCTGCACAGAAATCG
GCTTTGAACAGCCATCTAGCTAGACACACCGGTGAGAAACCCTTCATGTG
TGGAGAGTGTGACTACAGGTGCCTTCGCAAGGCTCAGTTGTCCAGACATA
TGAGAACCCATACAGGTGAAAAACCCTACATGTGTTGGGAGTGTGGGAAC
AGAACAACTGAACAGTGCCACTTGTCTGAACATATGAGAACTCACACAGG
TGAAAAAAACCTACAAGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000114 | genome | Sc0000114:16980..19590 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL75856_cuf1 |
| Biotype | protein_coding |
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